RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 METRNLQ641Q3 311 aa14.59□□□□□ -0.07
CLN3-213ENST00000565047 ANKS6Q68DC2 871 aa14.59□□□□□ -0.07
CLN3-213ENST00000565047 TMEM220Q6QAJ8 160 aa14.59□□□□□ -0.07
CLN3-213ENST00000565047 VASH2Q86V25 355 aa14.59□□□□□ -0.07
CLN3-213ENST00000565047 AMZ2Q86W34 360 aa14.59□□□□□ -0.07
CLN3-213ENST00000565047 TRAPPC5Q8IUR0 188 aa14.59□□□□□ -0.07
CLN3-213ENST00000565047 SYCE1Q8N0S2 351 aa14.59□□□□□ -0.07
CLN3-213ENST00000565047 FAM71DQ8N9W8 422 aa14.59□□□□□ -0.07
CLN3-213ENST00000565047 TTC13Q8NBP0 860 aa14.59□□□□□ -0.07
CLN3-213ENST00000565047 SPC24Q8NBT2 197 aa14.59□□□□□ -0.07
CLN3-213ENST00000565047 NAT14Q8WUY8 206 aa14.59□□□□□ -0.07
CLN3-213ENST00000565047 RTP4Q96DX8 246 aa14.59□□□□□ -0.07
CLN3-213ENST00000565047 LINC00615Q96LM1 132 aaPredicted RBP14.59□□□□□ -0.07
CLN3-213ENST00000565047 C9orf72Q96LT7 481 aa14.59□□□□□ -0.07
CLN3-213ENST00000565047 TBL1YQ9BQ87 522 aa14.59□□□□□ -0.07
CLN3-213ENST00000565047 RAB33BQ9H082 229 aa14.59□□□□□ -0.07
CLN3-213ENST00000565047 APMAPQ9HDC9 416 aa14.59□□□□□ -0.07
CLN3-213ENST00000565047 SEMA5BQ9P283 1151 aa14.59□□□□□ -0.07
CLN3-213ENST00000565047 FKBPLQ9UIM3 349 aa14.59□□□□□ -0.07
CLN3-213ENST00000565047 OR2AG2A6NM03 316 aa14.58□□□□□ -0.08
CLN3-213ENST00000565047 PDZK1P1A8MUH7 402 aa14.58□□□□□ -0.08
CLN3-213ENST00000565047 UBXN7O94888 489 aa14.58□□□□□ -0.08
CLN3-213ENST00000565047 VIPP01282 170 aa14.58□□□□□ -0.08
CLN3-213ENST00000565047 TYRP1P17643 537 aa14.58□□□□□ -0.08
CLN3-213ENST00000565047 CETN2P41208 172 aa14.58□□□□□ -0.08
CLN3-213ENST00000565047 TNNT3P45378 269 aaPredicted RBP14.58□□□□□ -0.08
CLN3-213ENST00000565047 LEPRP48357 1165 aaKnown RBP14.58□□□□□ -0.08
CLN3-213ENST00000565047 RAB15P59190 212 aa14.58□□□□□ -0.08
CLN3-213ENST00000565047 GTF2H3Q13889 308 aa14.58□□□□□ -0.08
CLN3-213ENST00000565047 NFE2L1Q14494 772 aa14.58□□□□□ -0.08
CLN3-213ENST00000565047 PRPSAP1Q14558 356 aa14.58□□□□□ -0.08
CLN3-213ENST00000565047 RPE65Q16518 533 aa14.58□□□□□ -0.08
CLN3-213ENST00000565047 BCL7AQ4VC05 210 aa14.58□□□□□ -0.08
CLN3-213ENST00000565047 SNAP47Q5SQN1 464 aa14.58□□□□□ -0.08
CLN3-213ENST00000565047 DCAF12Q5T6F0 453 aa14.58□□□□□ -0.08
CLN3-213ENST00000565047 TIPARPQ7Z3E1 657 aaKnown RBP14.58□□□□□ -0.08
CLN3-213ENST00000565047 PLXDC1Q8IUK5 500 aa14.58□□□□□ -0.08
CLN3-213ENST00000565047 RBM12BQ8IXT5 1001 aaKnown RBP14.58□□□□□ -0.08
CLN3-213ENST00000565047 UBL4BQ8N7F7 174 aa14.58□□□□□ -0.08
CLN3-213ENST00000565047 BEND7Q8N7W2 519 aaPredicted RBP14.58□□□□□ -0.08
CLN3-213ENST00000565047 EXD3Q8N9H8 876 aa14.58□□□□□ -0.08
CLN3-213ENST00000565047 GPR150Q8NGU9 434 aa14.58□□□□□ -0.08
CLN3-213ENST00000565047 GDAP1Q8TB36 358 aa14.58□□□□□ -0.08
CLN3-213ENST00000565047 RSC1A1Q92681 617 aa14.58□□□□□ -0.08
CLN3-213ENST00000565047 SGF29Q96ES7 293 aa14.58□□□□□ -0.08
CLN3-213ENST00000565047 TTC25Q96NG3 672 aa14.58□□□□□ -0.08
CLN3-213ENST00000565047 PPP1R2P1Q96PQ5 205 aa14.58□□□□□ -0.08
CLN3-213ENST00000565047 TMEM121Q9BTD3 319 aa14.58□□□□□ -0.08
CLN3-213ENST00000565047 ASPSCR1Q9BZE9 553 aa14.58□□□□□ -0.08
CLN3-213ENST00000565047 EPHA6Q9UF33 1036 aa14.58□□□□□ -0.08
CLN3-213ENST00000565047 FEZ2Q9UHY8 353 aaPredicted RBP14.58□□□□□ -0.08
CLN3-213ENST00000565047 PCDHGA4Q9Y5G9 962 aa14.58□□□□□ -0.08
CLN3-213ENST00000565047 IGLV3-16A0A075B6K0 115 aa14.57□□□□□ -0.08
CLN3-213ENST00000565047 TRBV5-4A0A0C4DH59 114 aa14.57□□□□□ -0.08
CLN3-213ENST00000565047 MGAT4DA6NG13 374 aa14.57□□□□□ -0.08
CLN3-213ENST00000565047 H7C0S8 307 aa14.57□□□□□ -0.08
CLN3-213ENST00000565047 TOX3O15405 576 aaPredicted RBP14.57□□□□□ -0.08
CLN3-213ENST00000565047 CAPN5O15484 640 aaPredicted RBP14.57□□□□□ -0.08
CLN3-213ENST00000565047 ZNF189O75820 626 aaPredicted RBP14.57□□□□□ -0.08
CLN3-213ENST00000565047 STK10O94804 968 aaKnown RBP14.57□□□□□ -0.08
CLN3-213ENST00000565047 MAPK9P45984 424 aa14.57□□□□□ -0.08
CLN3-213ENST00000565047 OASLQ15646 514 aaKnown RBP14.57□□□□□ -0.08
CLN3-213ENST00000565047 MANEAQ5SRI9 462 aa14.57□□□□□ -0.08
CLN3-213ENST00000565047 FAM129CQ86XR2 697 aa14.57□□□□□ -0.08
CLN3-213ENST00000565047 OR2L2Q8NH16 312 aa14.57□□□□□ -0.08
CLN3-213ENST00000565047 KLHL6Q8WZ60 621 aa14.57□□□□□ -0.08
CLN3-213ENST00000565047 ZNF514Q96K75 400 aaPredicted RBP14.57□□□□□ -0.08
CLN3-213ENST00000565047 TEFMQ96QE5 360 aaKnown RBP14.57□□□□□ -0.08
CLN3-213ENST00000565047 FERMT1Q9BQL6 677 aa14.57□□□□□ -0.08
CLN3-213ENST00000565047 SLC12A9Q9BXP2 914 aa14.57□□□□□ -0.08
CLN3-213ENST00000565047 ZCCHC2Q9C0B9 1178 aaKnown RBP14.57□□□□□ -0.08
CLN3-213ENST00000565047 ZNF768Q9H5H4 540 aaKnown RBP14.57□□□□□ -0.08
CLN3-213ENST00000565047 ASB8Q9H765 288 aa14.57□□□□□ -0.08
CLN3-213ENST00000565047 TMEM184BQ9Y519 407 aaPredicted RBP14.57□□□□□ -0.08
CLN3-213ENST00000565047 PCDHB11Q9Y5F2 797 aa14.57□□□□□ -0.08
CLN3-213ENST00000565047 CCL22O00626 93 aa14.56□□□□□ -0.08
CLN3-213ENST00000565047 KIF1CO43896 1103 aaKnown RBP14.56□□□□□ -0.08
CLN3-213ENST00000565047 CRTAMO95727 393 aa14.56□□□□□ -0.08
CLN3-213ENST00000565047 DLGAP3O95886 979 aa14.56□□□□□ -0.08
CLN3-213ENST00000565047 VCLP18206 1134 aa14.56□□□□□ -0.08
CLN3-213ENST00000565047 CAPZBP47756 277 aa14.56□□□□□ -0.08
CLN3-213ENST00000565047 CDKN1CP49918 316 aaPredicted RBP14.56□□□□□ -0.08
CLN3-213ENST00000565047 PDE1BQ01064 536 aa14.56□□□□□ -0.08
CLN3-213ENST00000565047 C19orf57Q0VDD7 668 aa14.56□□□□□ -0.08
CLN3-213ENST00000565047 LY6DQ14210 128 aa14.56□□□□□ -0.08
CLN3-213ENST00000565047 LONRF2Q1L5Z9 754 aa14.56□□□□□ -0.08
CLN3-213ENST00000565047 FNBP1LQ5T0N5 605 aa14.56□□□□□ -0.08
CLN3-213ENST00000565047 NXPE1Q8N323 547 aa14.56□□□□□ -0.08
CLN3-213ENST00000565047 TXLNBQ8N3L3 684 aa14.56□□□□□ -0.08
CLN3-213ENST00000565047 CCDC112Q8NEF3 446 aa14.56□□□□□ -0.08
CLN3-213ENST00000565047 JPH3Q8WXH2 748 aaPredicted RBP14.56□□□□□ -0.08
CLN3-213ENST00000565047 INSM2Q96T92 566 aaPredicted RBP14.56□□□□□ -0.08
CLN3-213ENST00000565047 CTRCQ99895 268 aa14.56□□□□□ -0.08
CLN3-213ENST00000565047 KLHL3Q9UH77 587 aa14.56□□□□□ -0.08
CLN3-213ENST00000565047 GOLGA6L9A6NEM1 432 aa14.55□□□□□ -0.08
CLN3-213ENST00000565047 MROH6A6NGR9 719 aa14.55□□□□□ -0.08
CLN3-213ENST00000565047 EIF4E1BA6NMX2 242 aaKnown RBP14.55□□□□□ -0.08
CLN3-213ENST00000565047 LIASO43766 372 aa14.55□□□□□ -0.08
CLN3-213ENST00000565047 AP2A1O95782 977 aa14.55□□□□□ -0.08
CLN3-213ENST00000565047 ITGB2P05107 769 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 82.6 ms