RNA–Protein interactions for RNA: ENST00000565023.1

VPS9D1-204, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 5

Gene VPS9D1, Length 775 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-204ENST00000565023 TMEM71Q6P5X7 295 aa13.4□□□□□ -0.26
VPS9D1-204ENST00000565023 DRICH1Q6PGQ1 229 aaPredicted RBP13.4□□□□□ -0.26
VPS9D1-204ENST00000565023 KLHDC8BQ8IXV7 354 aa13.4□□□□□ -0.26
VPS9D1-204ENST00000565023 BRSK1Q8TDC3 778 aa13.4□□□□□ -0.26
VPS9D1-204ENST00000565023 ART4Q93070 314 aa13.4□□□□□ -0.26
VPS9D1-204ENST00000565023 TMEM159Q96B96 161 aa13.4□□□□□ -0.26
VPS9D1-204ENST00000565023 LRRC45Q96CN5 670 aa13.4□□□□□ -0.26
VPS9D1-204ENST00000565023 CXorf40BQ96DE9 158 aa13.4□□□□□ -0.26
VPS9D1-204ENST00000565023 OSBPL9Q96SU4 736 aa13.4□□□□□ -0.26
VPS9D1-204ENST00000565023 LDHAL6BQ9BYZ2 381 aaPredicted RBP13.4□□□□□ -0.26
VPS9D1-204ENST00000565023 ZCCHC2Q9C0B9 1178 aaKnown RBP13.4□□□□□ -0.26
VPS9D1-204ENST00000565023 OCIAD1Q9NX40 245 aa13.4□□□□□ -0.26
VPS9D1-204ENST00000565023 ZNF624Q9P2J8 865 aaPredicted RBP13.4□□□□□ -0.26
VPS9D1-204ENST00000565023 CRLS1Q9UJA2 301 aa13.4□□□□□ -0.26
VPS9D1-204ENST00000565023 SNX12Q9UMY4 172 aa13.4□□□□□ -0.26
VPS9D1-204ENST00000565023 PCDHGA7Q9Y5G6 932 aa13.4□□□□□ -0.26
VPS9D1-204ENST00000565023 SDK2Q58EX2 2172 aa13.39□□□□□ -0.27
VPS9D1-204ENST00000565023 C9orf172C9J069 976 aa13.39□□□□□ -0.27
VPS9D1-204ENST00000565023 CES2O00748 559 aa13.39□□□□□ -0.27
VPS9D1-204ENST00000565023 SRP72O76094 671 aaKnown RBP13.39□□□□□ -0.27
VPS9D1-204ENST00000565023 FGF3P11487 239 aaPredicted RBP13.39□□□□□ -0.27
VPS9D1-204ENST00000565023 AMD1P17707 334 aa13.39□□□□□ -0.27
VPS9D1-204ENST00000565023 CLCNKAP51800 687 aa13.39□□□□□ -0.27
VPS9D1-204ENST00000565023 GFERP55789 205 aa13.39□□□□□ -0.27
VPS9D1-204ENST00000565023 GNG11P61952 73 aa13.39□□□□□ -0.27
VPS9D1-204ENST00000565023 UBE2IP63279 158 aaKnown RBP13.39□□□□□ -0.27
VPS9D1-204ENST00000565023 NFE2L1Q14494 772 aa13.39□□□□□ -0.27
VPS9D1-204ENST00000565023 POU6F1Q14863 301 aa13.39□□□□□ -0.27
VPS9D1-204ENST00000565023 CLPPQ16740 277 aaPredicted RBP13.39□□□□□ -0.27
VPS9D1-204ENST00000565023 PARP6Q2NL67 630 aa13.39□□□□□ -0.27
VPS9D1-204ENST00000565023 TMEM164Q5U3C3 297 aa13.39□□□□□ -0.27
VPS9D1-204ENST00000565023 CCDC81Q6ZN84 652 aa13.39□□□□□ -0.27
VPS9D1-204ENST00000565023 C11orf96Q7Z7L8 435 aa13.39□□□□□ -0.27
VPS9D1-204ENST00000565023 PRUNE1Q86TP1 453 aa13.39□□□□□ -0.27
VPS9D1-204ENST00000565023 VASH2Q86V25 355 aa13.39□□□□□ -0.27
VPS9D1-204ENST00000565023 AMZ2Q86W34 360 aa13.39□□□□□ -0.27
VPS9D1-204ENST00000565023 AGBL5Q8NDL9 886 aa13.39□□□□□ -0.27
VPS9D1-204ENST00000565023 DDHD1Q8NEL9 900 aa13.39□□□□□ -0.27
VPS9D1-204ENST00000565023 COG1Q8WTW3 980 aa13.39□□□□□ -0.27
VPS9D1-204ENST00000565023 SGF29Q96ES7 293 aa13.39□□□□□ -0.27
VPS9D1-204ENST00000565023 DNAJC1Q96KC8 554 aaKnown RBP13.39□□□□□ -0.27
VPS9D1-204ENST00000565023 PPP1R2P1Q96PQ5 205 aa13.39□□□□□ -0.27
VPS9D1-204ENST00000565023 CTRCQ99895 268 aa13.39□□□□□ -0.27
VPS9D1-204ENST00000565023 ZNF148Q9UQR1 794 aa13.39□□□□□ -0.27
VPS9D1-204ENST00000565023 DRG1Q9Y295 367 aaKnown RBP13.39□□□□□ -0.27
VPS9D1-204ENST00000565023 WDR37Q9Y2I8 494 aa13.39□□□□□ -0.27
VPS9D1-204ENST00000565023 TENM4Q6N022 2769 aa13.39□□□□□ -0.27
VPS9D1-204ENST00000565023 HGSO14964 777 aaPredicted RBP13.38□□□□□ -0.27
VPS9D1-204ENST00000565023 NVLO15381 856 aaKnown RBP13.38□□□□□ -0.27
VPS9D1-204ENST00000565023 PPFIA2O75334 1257 aa13.38□□□□□ -0.27
VPS9D1-204ENST00000565023 PRB1P04280 392 aa13.38□□□□□ -0.27
VPS9D1-204ENST00000565023 PRSS56P0CW18 603 aa13.38□□□□□ -0.27
VPS9D1-204ENST00000565023 BRAFP15056 766 aa13.38□□□□□ -0.27
VPS9D1-204ENST00000565023 MC4RP32245 332 aa13.38□□□□□ -0.27
VPS9D1-204ENST00000565023 HALP42357 657 aa13.38□□□□□ -0.27
VPS9D1-204ENST00000565023 LMAN1P49257 510 aa13.38□□□□□ -0.27
VPS9D1-204ENST00000565023 UCNP55089 124 aa13.38□□□□□ -0.27
VPS9D1-204ENST00000565023 VAC14Q08AM6 782 aa13.38□□□□□ -0.27
VPS9D1-204ENST00000565023 TRA2AQ13595 282 aaKnown RBP eCLIP13.38□□□□□ -0.27
VPS9D1-204ENST00000565023 CLCA4Q14CN2 919 aa13.38□□□□□ -0.27
VPS9D1-204ENST00000565023 P3H1Q32P28 736 aa13.38□□□□□ -0.27
VPS9D1-204ENST00000565023 ZRANB3Q5FWF4 1079 aa13.38□□□□□ -0.27
VPS9D1-204ENST00000565023 KIAA1614Q5VZ46 1190 aa13.38□□□□□ -0.27
VPS9D1-204ENST00000565023 DENND5AQ6IQ26 1287 aa13.38□□□□□ -0.27
VPS9D1-204ENST00000565023 FAM83HQ6ZRV2 1179 aaPredicted RBP13.38□□□□□ -0.27
VPS9D1-204ENST00000565023 TMEM26Q6ZUK4 368 aa13.38□□□□□ -0.27
VPS9D1-204ENST00000565023 PRELID2Q8N945 189 aa13.38□□□□□ -0.27
VPS9D1-204ENST00000565023 DCUN1D1Q96GG9 259 aa13.38□□□□□ -0.27
VPS9D1-204ENST00000565023 MS4A14Q96JA4 679 aa13.38□□□□□ -0.27
VPS9D1-204ENST00000565023 UBL7Q96S82 380 aaPredicted RBP13.38□□□□□ -0.27
VPS9D1-204ENST00000565023 DPYSL5Q9BPU6 564 aa13.38□□□□□ -0.27
VPS9D1-204ENST00000565023 LRRC40Q9H9A6 602 aa13.38□□□□□ -0.27
VPS9D1-204ENST00000565023 HOMER3Q9NSC5 361 aa13.38□□□□□ -0.27
VPS9D1-204ENST00000565023 SLC39A1Q9NY26 324 aa13.38□□□□□ -0.27
VPS9D1-204ENST00000565023 CFAP20Q9Y6A4 193 aaKnown RBP13.38□□□□□ -0.27
VPS9D1-204ENST00000565023 SLC30A1Q9Y6M5 507 aa13.38□□□□□ -0.27
VPS9D1-204ENST00000565023 AHCTF1Q8WYP5 2266 aa13.38□□□□□ -0.27
VPS9D1-204ENST00000565023 PIKFYVEQ9Y2I7 2098 aa13.37□□□□□ -0.27
VPS9D1-204ENST00000565023 LILRA5A6NI73 299 aa13.37□□□□□ -0.27
VPS9D1-204ENST00000565023 UBXN7O94888 489 aa13.37□□□□□ -0.27
VPS9D1-204ENST00000565023 POLBP06746 335 aa13.37□□□□□ -0.27
VPS9D1-204ENST00000565023 LIPCP11150 499 aa13.37□□□□□ -0.27
VPS9D1-204ENST00000565023 ETS1P14921 441 aa13.37□□□□□ -0.27
VPS9D1-204ENST00000565023 XRCC1P18887 633 aaPredicted RBP13.37□□□□□ -0.27
VPS9D1-204ENST00000565023 ITGALP20701 1170 aa13.37□□□□□ -0.27
VPS9D1-204ENST00000565023 SEPHS1P49903 392 aa13.37□□□□□ -0.27
VPS9D1-204ENST00000565023 CDKN1CP49918 316 aaPredicted RBP13.37□□□□□ -0.27
VPS9D1-204ENST00000565023 ZNF140P52738 457 aaPredicted RBP13.37□□□□□ -0.27
VPS9D1-204ENST00000565023 EPHA4P54764 986 aa13.37□□□□□ -0.27
VPS9D1-204ENST00000565023 XIAPP98170 497 aa13.37□□□□□ -0.27
VPS9D1-204ENST00000565023 SQSTM1Q13501 440 aa13.37□□□□□ -0.27
VPS9D1-204ENST00000565023 GPR18Q14330 331 aa13.37□□□□□ -0.27
VPS9D1-204ENST00000565023 KCTD19Q17RG1 926 aaPredicted RBP13.37□□□□□ -0.27
VPS9D1-204ENST00000565023 TAF1BQ53T94 588 aaPredicted RBP13.37□□□□□ -0.27
VPS9D1-204ENST00000565023 MANEAQ5SRI9 462 aa13.37□□□□□ -0.27
VPS9D1-204ENST00000565023 PAPD7Q5XG87 772 aaKnown RBP13.37□□□□□ -0.27
VPS9D1-204ENST00000565023 ANKS6Q68DC2 871 aa13.37□□□□□ -0.27
VPS9D1-204ENST00000565023 DUS1LQ6P1R4 473 aaKnown RBP13.37□□□□□ -0.27
VPS9D1-204ENST00000565023 ABRAXAS1Q6UWZ7 409 aa13.37□□□□□ -0.27
VPS9D1-204ENST00000565023 TAS2R42Q7RTR8 314 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms