RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 RPL38P63173 70 aaKnown RBP9.13□□□□□ -0.95
VPS39-205ENST00000562258 PEX6Q13608 980 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 MLF2Q15773 248 aaPredicted RBP9.13□□□□□ -0.95
VPS39-205ENST00000562258 TJAP1Q5JTD0 557 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 SUSD1Q6UWL2 747 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 KIRREL3Q8IZU9 778 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 PGAP3Q96FM1 320 aaPredicted RBP9.13□□□□□ -0.95
VPS39-205ENST00000562258 SLC39A13Q96H72 371 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 TUBB6Q9BUF5 446 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 VN1R3Q9BXE9 311 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 VCX3BQ9H321 246 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 IPPKQ9H8X2 491 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 MTMR10Q9NXD2 777 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 APOBEC3BQ9UH17 382 aaKnown RBP9.13□□□□□ -0.95
VPS39-205ENST00000562258 ANKRD6Q9Y2G4 727 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 DOCK5Q9H7D0 1870 aa9.12□□□□□ -0.95
VPS39-205ENST00000562258 RP1P56715 2156 aa9.12□□□□□ -0.95
VPS39-205ENST00000562258 NDUFB5O43674 189 aa9.12□□□□□ -0.95
VPS39-205ENST00000562258 ATP1B2P14415 290 aaPredicted RBP9.12□□□□□ -0.95
VPS39-205ENST00000562258 ZNF30P17039 623 aa9.12□□□□□ -0.95
VPS39-205ENST00000562258 PGM1P36871 562 aa9.12□□□□□ -0.95
VPS39-205ENST00000562258 ARSDP51689 593 aa9.12□□□□□ -0.95
VPS39-205ENST00000562258 LIMK2P53671 638 aa9.12□□□□□ -0.95
VPS39-205ENST00000562258 CHIT1Q13231 466 aa9.12□□□□□ -0.95
VPS39-205ENST00000562258 NAB1Q13506 487 aa9.12□□□□□ -0.95
VPS39-205ENST00000562258 CYP1B1Q16678 543 aa9.12□□□□□ -0.95
VPS39-205ENST00000562258 ATP13A5Q4VNC0 1218 aa9.12□□□□□ -0.95
VPS39-205ENST00000562258 KYAT3Q6YP21 454 aaKnown RBP9.12□□□□□ -0.95
VPS39-205ENST00000562258 GPRIN3Q6ZVF9 776 aa9.12□□□□□ -0.95
VPS39-205ENST00000562258 MTDHQ86UE4 582 aaKnown RBP9.12□□□□□ -0.95
VPS39-205ENST00000562258 GIMAP7Q8NHV1 300 aa9.12□□□□□ -0.95
VPS39-205ENST00000562258 ZNF689Q96CS4 500 aaPredicted RBP9.12□□□□□ -0.95
VPS39-205ENST00000562258 ZNF514Q96K75 400 aaPredicted RBP9.12□□□□□ -0.95
VPS39-205ENST00000562258 RBBP8Q99708 897 aa9.12□□□□□ -0.95
VPS39-205ENST00000562258 TMEM216Q9P0N5 145 aa9.12□□□□□ -0.95
VPS39-205ENST00000562258 SORCS3Q9UPU3 1222 aa9.12□□□□□ -0.95
VPS39-205ENST00000562258 ATXN2Q99700 1313 aaKnown RBP9.12□□□□□ -0.95
VPS39-205ENST00000562258 OR10H2O60403 315 aa9.12□□□□□ -0.95
VPS39-205ENST00000562258 SOCS5O75159 536 aa9.12□□□□□ -0.95
VPS39-205ENST00000562258 SIX3O95343 332 aaPredicted RBP9.12□□□□□ -0.95
VPS39-205ENST00000562258 LATS1O95835 1130 aa9.12□□□□□ -0.95
VPS39-205ENST00000562258 IL4RP24394 825 aa9.12□□□□□ -0.95
VPS39-205ENST00000562258 EPHA3P29320 983 aa9.12□□□□□ -0.95
VPS39-205ENST00000562258 CSNK1EP49674 416 aaKnown RBP9.12□□□□□ -0.95
VPS39-205ENST00000562258 SKP1P63208 163 aa9.12□□□□□ -0.95
VPS39-205ENST00000562258 CYP4F3Q08477 520 aa9.12□□□□□ -0.95
VPS39-205ENST00000562258 NAA25Q14CX7 972 aa9.12□□□□□ -0.95
VPS39-205ENST00000562258 MUM1Q2TAK8 710 aa9.12□□□□□ -0.95
VPS39-205ENST00000562258 KIAA0408Q6ZU52 694 aa9.12□□□□□ -0.95
VPS39-205ENST00000562258 BEND5Q7L4P6 421 aa9.12□□□□□ -0.95
VPS39-205ENST00000562258 FAM160A2Q8N612 972 aaPredicted RBP9.12□□□□□ -0.95
VPS39-205ENST00000562258 ZNF655Q8N720 491 aaPredicted RBP9.12□□□□□ -0.95
VPS39-205ENST00000562258 GBP7Q8N8V2 638 aaPredicted RBP9.12□□□□□ -0.95
VPS39-205ENST00000562258 SEC16BQ96JE7 1060 aa9.12□□□□□ -0.95
VPS39-205ENST00000562258 APOLD1Q96LR9 279 aa9.12□□□□□ -0.95
VPS39-205ENST00000562258 MTERF1Q99551 399 aaKnown RBP9.12□□□□□ -0.95
VPS39-205ENST00000562258 CCDC177Q9NQR7 707 aaPredicted RBP9.12□□□□□ -0.95
VPS39-205ENST00000562258 THAP1Q9NVV9 213 aa9.12□□□□□ -0.95
VPS39-205ENST00000562258 PSAT1Q9Y617 370 aa9.12□□□□□ -0.95
VPS39-205ENST00000562258 TSPAN6O43657 245 aa9.12□□□□□ -0.95
VPS39-205ENST00000562258 NUDT14O95848 222 aa9.12□□□□□ -0.95
VPS39-205ENST00000562258 EGFP01133 1207 aa9.12□□□□□ -0.95
VPS39-205ENST00000562258 SRPRAP08240 638 aaKnown RBP9.12□□□□□ -0.95
VPS39-205ENST00000562258 HOXA9P31269 272 aa9.12□□□□□ -0.95
VPS39-205ENST00000562258 POLD2P49005 469 aa9.12□□□□□ -0.95
VPS39-205ENST00000562258 EIF2B5Q13144 721 aaKnown RBP9.12□□□□□ -0.95
VPS39-205ENST00000562258 ZNF783Q6ZMS7 281 aa9.12□□□□□ -0.95
VPS39-205ENST00000562258 IGDCC3Q8IVU1 814 aa9.12□□□□□ -0.95
VPS39-205ENST00000562258 SLC44A3Q8N4M1 653 aa9.12□□□□□ -0.95
VPS39-205ENST00000562258 GLYATL1Q969I3 302 aa9.12□□□□□ -0.95
VPS39-205ENST00000562258 PGM2Q96G03 612 aa9.12□□□□□ -0.95
VPS39-205ENST00000562258 GSDMCQ9BYG8 508 aa9.12□□□□□ -0.95
VPS39-205ENST00000562258 RASSF4Q9H2L5 321 aa9.12□□□□□ -0.95
VPS39-205ENST00000562258 NOL11Q9H8H0 719 aaKnown RBP9.12□□□□□ -0.95
VPS39-205ENST00000562258 TRIM45Q9H8W5 580 aaPredicted RBP9.12□□□□□ -0.95
VPS39-205ENST00000562258 SGK2Q9HBY8 427 aa9.12□□□□□ -0.95
VPS39-205ENST00000562258 HSFX1Q9UBD0 423 aa9.12□□□□□ -0.95
VPS39-205ENST00000562258 MUTYHQ9UIF7 546 aa9.12□□□□□ -0.95
VPS39-205ENST00000562258 FAM32AQ9Y421 112 aaKnown RBP9.12□□□□□ -0.95
VPS39-205ENST00000562258 NPIPB15A6NHN6 443 aaPredicted RBP9.11□□□□□ -0.95
VPS39-205ENST00000562258 AURKAO14965 403 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 GABBR2O75899 941 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 CCR4P51679 360 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 ARF5P84085 180 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 KLF1Q13351 362 aaPredicted RBP9.11□□□□□ -0.95
VPS39-205ENST00000562258 SMAD4Q13485 552 aaKnown RBP9.11□□□□□ -0.95
VPS39-205ENST00000562258 NFYCQ13952 458 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 GPNMBQ14956 572 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 PRKD1Q15139 912 aaPredicted RBP9.11□□□□□ -0.95
VPS39-205ENST00000562258 CYP51A1Q16850 503 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 MLIPQ5VWP3 458 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 TRAF7Q6Q0C0 670 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 ZDHHC24Q6UX98 284 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 CNPY4Q8N129 248 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 FSTL5Q8N475 847 aaPredicted RBP9.11□□□□□ -0.95
VPS39-205ENST00000562258 PRICKLE1Q96MT3 831 aaPredicted RBP9.11□□□□□ -0.95
VPS39-205ENST00000562258 SYT11Q9BT88 431 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 TMEM120AQ9BXJ8 343 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 IL21Q9HBE4 155 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 IL21RQ9HBE5 538 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms