RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 ADAMTSL2Q86TH1 951 aa13.16□□□□□ -0.3
CLK3-206ENST00000562078 GALNT6Q8NCL4 622 aa13.16□□□□□ -0.3
CLK3-206ENST00000562078 ZMIZ2Q8NF64 920 aa13.16□□□□□ -0.3
CLK3-206ENST00000562078 GRPEL2Q8TAA5 225 aa13.16□□□□□ -0.3
CLK3-206ENST00000562078 SLC7A14Q8TBB6 771 aa13.16□□□□□ -0.3
CLK3-206ENST00000562078 RNF139Q8WU17 664 aa13.16□□□□□ -0.3
CLK3-206ENST00000562078 NT5C3BQ969T7 300 aa13.16□□□□□ -0.3
CLK3-206ENST00000562078 MFSD3Q96ES6 412 aa13.16□□□□□ -0.3
CLK3-206ENST00000562078 C8orf48Q96LL4 319 aa13.16□□□□□ -0.3
CLK3-206ENST00000562078 SLC2A13Q96QE2 648 aa13.16□□□□□ -0.3
CLK3-206ENST00000562078 ADAM2Q99965 735 aa13.16□□□□□ -0.3
CLK3-206ENST00000562078 TRIM8Q9BZR9 551 aa13.16□□□□□ -0.3
CLK3-206ENST00000562078 SLA2Q9H6Q3 261 aa13.16□□□□□ -0.3
CLK3-206ENST00000562078 SYTL2Q9HCH5 934 aa13.16□□□□□ -0.3
CLK3-206ENST00000562078 MAT2BQ9NZL9 334 aa13.16□□□□□ -0.3
CLK3-206ENST00000562078 RWDD3Q9Y3V2 267 aa13.16□□□□□ -0.3
CLK3-206ENST00000562078 MTHFD1P11586 935 aaKnown RBP13.16□□□□□ -0.3
CLK3-206ENST00000562078 AGXTP21549 392 aa13.16□□□□□ -0.3
CLK3-206ENST00000562078 OR2B6P58173 313 aa13.16□□□□□ -0.3
CLK3-206ENST00000562078 DAOAP59103 153 aa13.16□□□□□ -0.3
CLK3-206ENST00000562078 EIF2B5Q13144 721 aaKnown RBP13.16□□□□□ -0.3
CLK3-206ENST00000562078 CYP51A1Q16850 503 aa13.16□□□□□ -0.3
CLK3-206ENST00000562078 ZNF181Q2M3W8 571 aa13.16□□□□□ -0.3
CLK3-206ENST00000562078 STEAP4Q687X5 459 aa13.16□□□□□ -0.3
CLK3-206ENST00000562078 PELI3Q8N2H9 469 aa13.16□□□□□ -0.3
CLK3-206ENST00000562078 PROX1Q92786 737 aa13.16□□□□□ -0.3
CLK3-206ENST00000562078 ST6GAL2Q96JF0 529 aa13.16□□□□□ -0.3
CLK3-206ENST00000562078 LGMNQ99538 433 aa13.16□□□□□ -0.3
CLK3-206ENST00000562078 ZMAT5Q9UDW3 170 aaKnown RBP13.16□□□□□ -0.3
CLK3-206ENST00000562078 VTI1BQ9UEU0 232 aa13.16□□□□□ -0.3
CLK3-206ENST00000562078 PCDHB3Q9Y5E6 796 aa13.16□□□□□ -0.3
CLK3-206ENST00000562078 V9GYQ6 96 aa13.16□□□□□ -0.3
CLK3-206ENST00000562078 H0YAE9 185 aa13.15□□□□□ -0.3
CLK3-206ENST00000562078 SNX2O60749 519 aa13.15□□□□□ -0.3
CLK3-206ENST00000562078 ARHGEF15O94989 841 aa13.15□□□□□ -0.3
CLK3-206ENST00000562078 SNRPB2P08579 225 aaKnown RBP13.15□□□□□ -0.3
CLK3-206ENST00000562078 USP17L7P0C7H9 530 aa13.15□□□□□ -0.3
CLK3-206ENST00000562078 PCMT1P22061 227 aa13.15□□□□□ -0.3
CLK3-206ENST00000562078 RFC2P35250 354 aa13.15□□□□□ -0.3
CLK3-206ENST00000562078 PYCR3Q53H96 274 aa13.15□□□□□ -0.3
CLK3-206ENST00000562078 C8orf82Q6P1X6 216 aaPredicted RBP13.15□□□□□ -0.3
CLK3-206ENST00000562078 LRRC8DQ7L1W4 858 aa13.15□□□□□ -0.3
CLK3-206ENST00000562078 BNIPLQ7Z465 357 aa13.15□□□□□ -0.3
CLK3-206ENST00000562078 THAP5Q7Z6K1 395 aa13.15□□□□□ -0.3
CLK3-206ENST00000562078 MRPL10Q7Z7H8 261 aaKnown RBP13.15□□□□□ -0.3
CLK3-206ENST00000562078 FAM126BQ8IXS8 530 aa13.15□□□□□ -0.3
CLK3-206ENST00000562078 FBXL6Q8N531 539 aa13.15□□□□□ -0.3
CLK3-206ENST00000562078 TRPV3Q8NET8 790 aa13.15□□□□□ -0.3
CLK3-206ENST00000562078 NXNL1Q96CM4 212 aa13.15□□□□□ -0.3
CLK3-206ENST00000562078 CCDC120Q96HB5 630 aa13.15□□□□□ -0.3
CLK3-206ENST00000562078 FTHL17Q9BXU8 183 aa13.15□□□□□ -0.3
CLK3-206ENST00000562078 ACE2Q9BYF1 805 aaPredicted RBP13.15□□□□□ -0.3
CLK3-206ENST00000562078 PDE10AQ9Y233 779 aa13.15□□□□□ -0.3
CLK3-206ENST00000562078 MAGED1Q9Y5V3 778 aaPredicted RBP13.15□□□□□ -0.3
CLK3-206ENST00000562078 AQP12BA6NM10 295 aa13.15□□□□□ -0.3
CLK3-206ENST00000562078 TRIM77I1YAP6 450 aa13.15□□□□□ -0.3
CLK3-206ENST00000562078 INPP4BO15327 924 aa13.15□□□□□ -0.3
CLK3-206ENST00000562078 NRP2O60462 931 aa13.15□□□□□ -0.3
CLK3-206ENST00000562078 B3GAT3O94766 335 aa13.15□□□□□ -0.3
CLK3-206ENST00000562078 DBTP11182 482 aaKnown RBP13.15□□□□□ -0.3
CLK3-206ENST00000562078 ODC1P11926 461 aa13.15□□□□□ -0.3
CLK3-206ENST00000562078 BDNFP23560 247 aa13.15□□□□□ -0.3
CLK3-206ENST00000562078 IL12AP29459 219 aa13.15□□□□□ -0.3
CLK3-206ENST00000562078 WEE1P30291 646 aa13.15□□□□□ -0.3
CLK3-206ENST00000562078 BRCC3P46736 316 aa13.15□□□□□ -0.3
CLK3-206ENST00000562078 GLRBP48167 497 aa13.15□□□□□ -0.3
CLK3-206ENST00000562078 MBTPS1Q14703 1052 aa13.15□□□□□ -0.3
CLK3-206ENST00000562078 YIF1BQ5BJH7 314 aa13.15□□□□□ -0.3
CLK3-206ENST00000562078 RBM48Q5RL73 367 aaKnown RBP13.15□□□□□ -0.3
CLK3-206ENST00000562078 LIPMQ5VYY2 423 aa13.15□□□□□ -0.3
CLK3-206ENST00000562078 ZNF544Q6NX49 715 aa13.15□□□□□ -0.3
CLK3-206ENST00000562078 AQP12AQ8IXF9 295 aa13.15□□□□□ -0.3
CLK3-206ENST00000562078 SVOPQ8N4V2 548 aa13.15□□□□□ -0.3
CLK3-206ENST00000562078 ACVR1CQ8NER5 493 aa13.15□□□□□ -0.3
CLK3-206ENST00000562078 MYLPFQ96A32 169 aa13.15□□□□□ -0.3
CLK3-206ENST00000562078 RTP3Q9BQQ7 232 aa13.15□□□□□ -0.3
CLK3-206ENST00000562078 PAK1IP1Q9NWT1 392 aaPredicted RBP13.15□□□□□ -0.3
CLK3-206ENST00000562078 RCOR3Q9P2K3 495 aaPredicted RBP13.15□□□□□ -0.3
CLK3-206ENST00000562078 CDH9Q9ULB4 789 aa13.15□□□□□ -0.3
CLK3-206ENST00000562078 ZNF99A8MXY4 864 aaPredicted RBP13.14□□□□□ -0.31
CLK3-206ENST00000562078 H2AFYO75367 372 aaKnown RBP13.14□□□□□ -0.31
CLK3-206ENST00000562078 IFI30P13284 250 aa13.14□□□□□ -0.31
CLK3-206ENST00000562078 SELPP16109 830 aa13.14□□□□□ -0.31
CLK3-206ENST00000562078 CBLP22681 906 aa13.14□□□□□ -0.31
CLK3-206ENST00000562078 MGAT1P26572 445 aa13.14□□□□□ -0.31
CLK3-206ENST00000562078 RPL9P32969 192 aaKnown RBP13.14□□□□□ -0.31
CLK3-206ENST00000562078 GP5P40197 560 aa13.14□□□□□ -0.31
CLK3-206ENST00000562078 TAGLNQ01995 201 aaKnown RBP13.14□□□□□ -0.31
CLK3-206ENST00000562078 CTU2Q2VPK5 515 aaKnown RBP13.14□□□□□ -0.31
CLK3-206ENST00000562078 FSTL4Q6MZW2 842 aa13.14□□□□□ -0.31
CLK3-206ENST00000562078 FAM45BPQ6NSW5 357 aa13.14□□□□□ -0.31
CLK3-206ENST00000562078 MAMSTRQ6ZN01 415 aa13.14□□□□□ -0.31
CLK3-206ENST00000562078 CYS1Q717R9 158 aa13.14□□□□□ -0.31
CLK3-206ENST00000562078 GALNT7Q86SF2 657 aa13.14□□□□□ -0.31
CLK3-206ENST00000562078 PSTKQ8IV42 348 aaKnown RBP13.14□□□□□ -0.31
CLK3-206ENST00000562078 SYTL1Q8IYJ3 562 aa13.14□□□□□ -0.31
CLK3-206ENST00000562078 DNAJC5GQ8N7S2 189 aa13.14□□□□□ -0.31
CLK3-206ENST00000562078 KDM1BQ8NB78 822 aa13.14□□□□□ -0.31
CLK3-206ENST00000562078 FAM45AQ8TCE6 357 aa13.14□□□□□ -0.31
CLK3-206ENST00000562078 ELMO1Q92556 727 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms