RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 COX4I1P13073 169 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 MTHFD2P13995 350 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 EPB42P16452 691 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 CTPS1P17812 591 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 MPSTP25325 297 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 GGT5P36269 586 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 ABCG1P45844 678 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 KRT6CP48668 564 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 STK19P49842 368 aaPredicted RBP7.41□□□□□ -1.22
VPS39-204ENST00000561818 ARHGAP8P85298 464 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 PTSQ03393 145 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 KDSRQ06136 332 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 LRRC74AQ0VAA2 488 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 KLF10Q13118 480 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 RUNX3Q13761 415 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 STARD3Q14849 445 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 AGERQ15109 404 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 TSNQ15631 228 aaKnown RBP7.41□□□□□ -1.22
VPS39-204ENST00000561818 CHRNA6Q15825 494 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 LSM12Q3MHD2 195 aaKnown RBP7.41□□□□□ -1.22
VPS39-204ENST00000561818 MMEL1Q495T6 779 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 BCL7AQ4VC05 210 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 ATP6AP1LQ52LC2 224 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 ZNF789Q5FWF6 425 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 FAM78AQ5JUQ0 283 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 GPRC6AQ5T6X5 926 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 GET4Q7L5D6 327 aaPredicted RBP7.41□□□□□ -1.22
VPS39-204ENST00000561818 PIM3Q86V86 326 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 LONP2Q86WA8 852 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 CPNE9Q8IYJ1 553 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 PELI3Q8N2H9 469 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 MIER2Q8N344 545 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 RAB42Q8N4Z0 105 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 ENDOVQ8N8Q3 282 aaKnown RBP7.41□□□□□ -1.22
VPS39-204ENST00000561818 GLB1L3Q8NCI6 653 aaPredicted RBP7.41□□□□□ -1.22
VPS39-204ENST00000561818 ACVR1CQ8NER5 493 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 CXorf40AQ8TE69 158 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 AGAP11Q8TF27 550 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 TWIST2Q8WVJ9 160 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 BTN2A2Q8WVV5 523 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 GLYATL1Q969I3 302 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 ATP6V1E2Q96A05 226 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 TMEM159Q96B96 161 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 PTERQ96BW5 349 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 REPS1Q96D71 796 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 THOC1Q96FV9 657 aaKnown RBP7.41□□□□□ -1.22
VPS39-204ENST00000561818 MRGPRX3Q96LB0 322 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 EGFL8Q99944 293 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 HOPXQ9BPY8 73 aaPredicted RBP7.41□□□□□ -1.22
VPS39-204ENST00000561818 HGH1Q9BTY7 390 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 NTMT1Q9BV86 223 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 SLC12A9Q9BXP2 914 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 NUF2Q9BZD4 464 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 C20orf27Q9GZN8 174 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 DPEP2Q9H4A9 486 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 PCDH12Q9NPG4 1184 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 ITM2CQ9NQX7 267 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 ARL8BQ9NVJ2 186 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 NMRK1Q9NWW6 199 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 TAS2R1Q9NYW7 299 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 WWOXQ9NZC7 414 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 ZIM2Q9NZV7 527 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 BAIAP2L1Q9UHR4 511 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 ZDHHC2Q9UIJ5 367 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 PCTPQ9UKL6 214 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 SNX6Q9UNH7 406 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 GPR34Q9UPC5 381 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 WASF2Q9Y6W5 498 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 MYLKQ15746 1914 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 A0A1W2PPC1 479 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 KANSL1LA0AUZ9 987 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 SERTM1A2A2V5 107 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 TBC1D3BA6NDS4 549 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 NPEPPSL1A6NEC2 478 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 C16orf96A6NNT2 1141 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 E9PBE3 544 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 UBXN8O00124 270 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 PSMD12O00232 456 aaPredicted RBP7.4□□□□□ -1.22
VPS39-204ENST00000561818 KPNA3O00505 521 aaPredicted RBP7.4□□□□□ -1.22
VPS39-204ENST00000561818 SDHDO14521 159 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 NEMP1O14524 444 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 GAPDHSO14556 408 aaPredicted RBP7.4□□□□□ -1.22
VPS39-204ENST00000561818 TOR1BO14657 336 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 GRID2O43424 1007 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 BUD23O43709 281 aaKnown RBP7.4□□□□□ -1.22
VPS39-204ENST00000561818 SYNCRIPO60506 623 aaKnown RBP7.4□□□□□ -1.22
VPS39-204ENST00000561818 KLHL41O60662 606 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 NIPSNAP2O75323 286 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 GJB3O75712 270 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 STK16O75716 305 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 TRIM16O95361 564 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 SNRPB2P08579 225 aaKnown RBP7.4□□□□□ -1.22
VPS39-204ENST00000561818 HSD3B1P14060 373 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 C5AR1P21730 350 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 HSD3B2P26439 372 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 PIK3R1P27986 724 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 AOAHP28039 575 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 HMOX2P30519 316 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 HNRNPH1P31943 449 aaKnown RBP7.4□□□□□ -1.22
VPS39-204ENST00000561818 PSMD8P48556 350 aa7.4□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms