RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 TREX1Q9NSU2 369 aa11.67□□□□□ -0.54
LDLR-212ENST00000560467 CATSPERZQ9NTU4 200 aa11.67□□□□□ -0.54
LDLR-212ENST00000560467 ZNF446Q9NWS9 450 aa11.67□□□□□ -0.54
LDLR-212ENST00000560467 KLF15Q9UIH9 416 aa11.67□□□□□ -0.54
LDLR-212ENST00000560467 SPO11Q9Y5K1 396 aa11.67□□□□□ -0.54
LDLR-212ENST00000560467 PIEZO2Q9H5I5 2752 aa11.67□□□□□ -0.54
LDLR-212ENST00000560467 ZCWPW2A0A1B0GU75 182 aa11.66□□□□□ -0.54
LDLR-212ENST00000560467 NEMP2A6NFY4 417 aa11.66□□□□□ -0.54
LDLR-212ENST00000560467 FAM159BA6NKW6 160 aa11.66□□□□□ -0.54
LDLR-212ENST00000560467 A8MX80 341 aa11.66□□□□□ -0.54
LDLR-212ENST00000560467 PSMD11O00231 422 aa11.66□□□□□ -0.54
LDLR-212ENST00000560467 CD3EAPO15446 510 aaKnown RBP11.66□□□□□ -0.54
LDLR-212ENST00000560467 SPINT1O43278 529 aa11.66□□□□□ -0.54
LDLR-212ENST00000560467 NDUFS3O75489 264 aa11.66□□□□□ -0.54
LDLR-212ENST00000560467 CLDN7O95471 211 aa11.66□□□□□ -0.54
LDLR-212ENST00000560467 SHBGP04278 402 aa11.66□□□□□ -0.54
LDLR-212ENST00000560467 SNRPAP09012 282 aaKnown RBP11.66□□□□□ -0.54
LDLR-212ENST00000560467 ADRB3P13945 408 aa11.66□□□□□ -0.54
LDLR-212ENST00000560467 NME1P15531 152 aaKnown RBP11.66□□□□□ -0.54
LDLR-212ENST00000560467 SPAM1P38567 509 aa11.66□□□□□ -0.54
LDLR-212ENST00000560467 GP5P40197 560 aa11.66□□□□□ -0.54
LDLR-212ENST00000560467 SLCO1A2P46721 670 aa11.66□□□□□ -0.54
LDLR-212ENST00000560467 TTPAP49638 278 aa11.66□□□□□ -0.54
LDLR-212ENST00000560467 SLC12A2P55011 1212 aa11.66□□□□□ -0.54
LDLR-212ENST00000560467 HNRNPKP61978 463 aaKnown RBP eCLIP11.66□□□□□ -0.544e-6■■■■□ 21.9
LDLR-212ENST00000560467 CACNG1Q06432 222 aa11.66□□□□□ -0.54
LDLR-212ENST00000560467 ZNF844Q08AG5 666 aa11.66□□□□□ -0.54
LDLR-212ENST00000560467 VAC14Q08AM6 782 aa11.66□□□□□ -0.54
LDLR-212ENST00000560467 ACOX1Q15067 660 aa11.66□□□□□ -0.54
LDLR-212ENST00000560467 RASA2Q15283 850 aa11.66□□□□□ -0.54
LDLR-212ENST00000560467 DEFB133Q30KQ1 61 aa11.66□□□□□ -0.54
LDLR-212ENST00000560467 GPR33Q49SQ1 333 aa11.66□□□□□ -0.54
LDLR-212ENST00000560467 ZRANB3Q5FWF4 1079 aa11.66□□□□□ -0.54
LDLR-212ENST00000560467 KIAA1614Q5VZ46 1190 aa11.66□□□□□ -0.54
LDLR-212ENST00000560467 LRRC66Q68CR7 880 aa11.66□□□□□ -0.54
LDLR-212ENST00000560467 ZNF470Q6ECI4 717 aa11.66□□□□□ -0.54
LDLR-212ENST00000560467 DPPA4Q7L190 304 aa11.66□□□□□ -0.54
LDLR-212ENST00000560467 STRA8Q7Z7C7 330 aa11.66□□□□□ -0.54
LDLR-212ENST00000560467 PARGQ86W56 976 aa11.66□□□□□ -0.54
LDLR-212ENST00000560467 TDRPQ86YL5 185 aa11.66□□□□□ -0.54
LDLR-212ENST00000560467 NRSN1Q8IZ57 195 aa11.66□□□□□ -0.54
LDLR-212ENST00000560467 OR2W6PQ8NHA6 318 aa11.66□□□□□ -0.54
LDLR-212ENST00000560467 PGM2Q96G03 612 aa11.66□□□□□ -0.54
LDLR-212ENST00000560467 CDKN2AIPNLQ96HQ2 116 aa11.66□□□□□ -0.54
LDLR-212ENST00000560467 DNAJC1Q96KC8 554 aaKnown RBP11.66□□□□□ -0.54
LDLR-212ENST00000560467 PAFAH2Q99487 392 aa11.66□□□□□ -0.54
LDLR-212ENST00000560467 DUSP23Q9BVJ7 150 aa11.66□□□□□ -0.54
LDLR-212ENST00000560467 C1QTNF7Q9BXJ2 289 aa11.66□□□□□ -0.54
LDLR-212ENST00000560467 SLC17A9Q9BYT1 436 aa11.66□□□□□ -0.54
LDLR-212ENST00000560467 FAM83DQ9H4H8 585 aa11.66□□□□□ -0.54
LDLR-212ENST00000560467 EVA1BQ9NVM1 165 aa11.66□□□□□ -0.54
LDLR-212ENST00000560467 IL17CQ9P0M4 197 aa11.66□□□□□ -0.54
LDLR-212ENST00000560467 B4GALT6Q9UBX8 382 aa11.66□□□□□ -0.54
LDLR-212ENST00000560467 ZNF180Q9UJW8 692 aa11.66□□□□□ -0.54
LDLR-212ENST00000560467 GLYATL1P3A0A0U1RQE8 302 aa11.65□□□□□ -0.54
LDLR-212ENST00000560467 SPTY2D1-AS1A0A0U1RR47 76 aa11.65□□□□□ -0.54
LDLR-212ENST00000560467 NPIPB15A6NHN6 443 aaPredicted RBP11.65□□□□□ -0.54
LDLR-212ENST00000560467 HMGB1P1B2RPK0 211 aaPredicted RBP11.65□□□□□ -0.54
LDLR-212ENST00000560467 H3BM21 787 aa11.65□□□□□ -0.54
LDLR-212ENST00000560467 BUD23O43709 281 aaKnown RBP11.65□□□□□ -0.54
LDLR-212ENST00000560467 PAK4O96013 591 aaPredicted RBP11.65□□□□□ -0.54
LDLR-212ENST00000560467 MT-ND3P03897 115 aa11.65□□□□□ -0.54
LDLR-212ENST00000560467 CSF2P04141 144 aa11.65□□□□□ -0.54
LDLR-212ENST00000560467 PYGLP06737 847 aa11.65□□□□□ -0.54
LDLR-212ENST00000560467 RALBP11234 206 aa11.65□□□□□ -0.54
LDLR-212ENST00000560467 C6P13671 934 aa11.65□□□□□ -0.54
LDLR-212ENST00000560467 RBMS1P29558 406 aaKnown RBP11.65□□□□□ -0.54
LDLR-212ENST00000560467 MC4RP32245 332 aa11.65□□□□□ -0.54
LDLR-212ENST00000560467 POLD2P49005 469 aa11.65□□□□□ -0.54
LDLR-212ENST00000560467 LIG3P49916 1009 aa11.65□□□□□ -0.54
LDLR-212ENST00000560467 ZNF140P52738 457 aaPredicted RBP11.65□□□□□ -0.54
LDLR-212ENST00000560467 CSE1LP55060 971 aaKnown RBP11.65□□□□□ -0.54
LDLR-212ENST00000560467 RPS21P63220 83 aaKnown RBP11.65□□□□□ -0.54
LDLR-212ENST00000560467 ACVR1Q04771 509 aa11.65□□□□□ -0.54
LDLR-212ENST00000560467 EIF2B5Q13144 721 aaKnown RBP11.65□□□□□ -0.54
LDLR-212ENST00000560467 SGCGQ13326 291 aa11.65□□□□□ -0.54
LDLR-212ENST00000560467 MSLNQ13421 630 aaPredicted RBP11.65□□□□□ -0.54
LDLR-212ENST00000560467 ITGA9Q13797 1035 aa11.65□□□□□ -0.54
LDLR-212ENST00000560467 PDE1CQ14123 709 aaPredicted RBP11.65□□□□□ -0.54
LDLR-212ENST00000560467 SEPT7Q16181 437 aaKnown RBP11.65□□□□□ -0.54
LDLR-212ENST00000560467 PERM1Q5SV97 790 aa11.65□□□□□ -0.54
LDLR-212ENST00000560467 KIAA1161Q6NSJ0 714 aa11.65□□□□□ -0.54
LDLR-212ENST00000560467 ZCCHC8Q6NZY4 707 aaKnown RBP11.65□□□□□ -0.54
LDLR-212ENST00000560467 FOXR1Q6PIV2 292 aa11.65□□□□□ -0.54
LDLR-212ENST00000560467 MARK2Q7KZI7 788 aaKnown RBP11.65□□□□□ -0.54
LDLR-212ENST00000560467 PARS2Q7L3T8 475 aaKnown RBP11.65□□□□□ -0.54
LDLR-212ENST00000560467 RBFAQ8N0V3 343 aa11.65□□□□□ -0.54
LDLR-212ENST00000560467 AGGF1Q8N302 714 aaeCLIP11.65□□□□□ -0.54
LDLR-212ENST00000560467 LMX1AQ8TE12 382 aa11.65□□□□□ -0.54
LDLR-212ENST00000560467 SNRNP27Q8WVK2 155 aaKnown RBP11.65□□□□□ -0.54
LDLR-212ENST00000560467 SLC44A1Q8WWI5 657 aa11.65□□□□□ -0.54
LDLR-212ENST00000560467 ULK4Q96C45 1275 aa11.65□□□□□ -0.54
LDLR-212ENST00000560467 PRR11Q96HE9 360 aaPredicted RBP11.65□□□□□ -0.54
LDLR-212ENST00000560467 SGSM3Q96HU1 749 aa11.65□□□□□ -0.54
LDLR-212ENST00000560467 TBATAQ96M53 351 aa11.65□□□□□ -0.54
LDLR-212ENST00000560467 NSMCE3Q96MG7 304 aa11.65□□□□□ -0.54
LDLR-212ENST00000560467 SLC46A1Q96NT5 459 aa11.65□□□□□ -0.54
LDLR-212ENST00000560467 PLEKHG4BQ96PX9 1271 aa11.65□□□□□ -0.54
LDLR-212ENST00000560467 DPH1Q9BZG8 443 aa11.65□□□□□ -0.54
LDLR-212ENST00000560467 EPB41L4BQ9H329 900 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms