RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 AP2A2O94973 939 aa21.42■■□□□ 1.02
SNX1-210ENST00000560260 FAM153BP0C7A2 387 aa21.42■■□□□ 1.02
SNX1-210ENST00000560260 MYF5P13349 255 aa21.42■■□□□ 1.02
SNX1-210ENST00000560260 PMLP29590 882 aa21.42■■□□□ 1.02
SNX1-210ENST00000560260 GRK6P43250 576 aa21.42■■□□□ 1.02
SNX1-210ENST00000560260 SUZ12Q15022 739 aaKnown RBP21.42■■□□□ 1.02
SNX1-210ENST00000560260 FAM153CQ494X1 144 aa21.42■■□□□ 1.02
SNX1-210ENST00000560260 CTSL3PQ5NE16 218 aa21.42■■□□□ 1.02
SNX1-210ENST00000560260 TEDDM1Q5T9Z0 273 aa21.42■■□□□ 1.02
SNX1-210ENST00000560260 RELL1Q8IUW5 271 aa21.42■■□□□ 1.02
SNX1-210ENST00000560260 LILRA3Q8N6C8 439 aaPredicted RBP21.42■■□□□ 1.02
SNX1-210ENST00000560260 C2CD4AQ8NCU7 369 aaPredicted RBP21.42■■□□□ 1.02
SNX1-210ENST00000560260 ZNF514Q96K75 400 aaPredicted RBP21.42■■□□□ 1.02
SNX1-210ENST00000560260 LINC00615Q96LM1 132 aaPredicted RBP21.42■■□□□ 1.02
SNX1-210ENST00000560260 TCF12Q99081 682 aa21.42■■□□□ 1.02
SNX1-210ENST00000560260 TBC1D29Q9UFV1 150 aa21.42■■□□□ 1.02
SNX1-210ENST00000560260 U3KQA8 63 aa21.42■■□□□ 1.02
SNX1-210ENST00000560260 UBA6A0AVT1 1052 aaPredicted RBP21.41■■□□□ 1.02
SNX1-210ENST00000560260 A6NCN8 305 aa21.41■■□□□ 1.02
SNX1-210ENST00000560260 IQCF5A8MTL0 148 aa21.41■■□□□ 1.02
SNX1-210ENST00000560260 PRMT5O14744 637 aaPredicted RBP21.41■■□□□ 1.02
SNX1-210ENST00000560260 TPP1O14773 563 aa21.41■■□□□ 1.02
SNX1-210ENST00000560260 PIAS1O75925 651 aa21.41■■□□□ 1.02
SNX1-210ENST00000560260 RPS3P23396 243 aaKnown RBP eCLIP21.41■■□□□ 1.02
SNX1-210ENST00000560260 GABRB3P28472 473 aa21.41■■□□□ 1.02
SNX1-210ENST00000560260 HOXD11P31277 338 aaPredicted RBP21.41■■□□□ 1.02
SNX1-210ENST00000560260 CLCNKAP51800 687 aa21.41■■□□□ 1.02
SNX1-210ENST00000560260 EIF3BP55884 814 aaKnown RBP21.41■■□□□ 1.02
SNX1-210ENST00000560260 DMPKQ09013 629 aa21.41■■□□□ 1.02
SNX1-210ENST00000560260 RSPO4Q2I0M5 234 aaPredicted RBP21.41■■□□□ 1.02
SNX1-210ENST00000560260 C6orf132Q5T0Z8 1188 aa21.41■■□□□ 1.02
SNX1-210ENST00000560260 SDCCAG8Q86SQ7 713 aaPredicted RBP21.41■■□□□ 1.02
SNX1-210ENST00000560260 PALM2Q8IXS6 379 aa21.41■■□□□ 1.02
SNX1-210ENST00000560260 LMNTD2Q8IXW0 634 aa21.41■■□□□ 1.02
SNX1-210ENST00000560260 CALML6Q8TD86 181 aa21.41■■□□□ 1.02
SNX1-210ENST00000560260 SETD7Q8WTS6 366 aaKnown RBP21.41■■□□□ 1.02
SNX1-210ENST00000560260 PATE1Q8WXA2 126 aa21.41■■□□□ 1.02
SNX1-210ENST00000560260 BIRC8Q96P09 236 aa21.41■■□□□ 1.02
SNX1-210ENST00000560260 TTC1Q99614 292 aa21.41■■□□□ 1.02
SNX1-210ENST00000560260 CDC42EP4Q9H3Q1 356 aaKnown RBP21.41■■□□□ 1.02
SNX1-210ENST00000560260 INTS10Q9NVR2 710 aaKnown RBP21.41■■□□□ 1.02
SNX1-210ENST00000560260 FAM8A1Q9UBU6 413 aa21.41■■□□□ 1.02
SNX1-210ENST00000560260 ARHGEF17Q96PE2 2063 aaPredicted RBP21.4■■□□□ 1.02
SNX1-210ENST00000560260 TCRBV9S1A1TA0A576 114 aa21.4■■□□□ 1.02
SNX1-210ENST00000560260 NEMP2A6NFY4 417 aa21.4■■□□□ 1.02
SNX1-210ENST00000560260 NOBOXO60393 691 aa21.4■■□□□ 1.02
SNX1-210ENST00000560260 ITGB6P18564 788 aa21.4■■□□□ 1.02
SNX1-210ENST00000560260 TNFRSF8P28908 595 aa21.4■■□□□ 1.02
SNX1-210ENST00000560260 PPARGP37231 505 aaPredicted RBP21.4■■□□□ 1.02
SNX1-210ENST00000560260 ABCG1P45844 678 aa21.4■■□□□ 1.02
SNX1-210ENST00000560260 MGAT5Q09328 741 aa21.4■■□□□ 1.02
SNX1-210ENST00000560260 NFE2L1Q14494 772 aa21.4■■□□□ 1.02
SNX1-210ENST00000560260 PROX2Q3B8N5 592 aa21.4■■□□□ 1.02
SNX1-210ENST00000560260 RNF187Q5TA31 235 aaPredicted RBP21.4■■□□□ 1.02
SNX1-210ENST00000560260 AMZ2Q86W34 360 aa21.4■■□□□ 1.02
SNX1-210ENST00000560260 SPNS2Q8IVW8 549 aa21.4■■□□□ 1.02
SNX1-210ENST00000560260 SLC35F3Q8IY50 421 aa21.4■■□□□ 1.02
SNX1-210ENST00000560260 SDR16C5Q8N3Y7 309 aa21.4■■□□□ 1.02
SNX1-210ENST00000560260 KYQ8NBH2 561 aa21.4■■□□□ 1.02
SNX1-210ENST00000560260 FAM46DQ8NEK8 389 aa21.4■■□□□ 1.02
SNX1-210ENST00000560260 RHBDD1Q8TEB9 315 aa21.4■■□□□ 1.02
SNX1-210ENST00000560260 OSGEPL1Q9H4B0 414 aa21.4■■□□□ 1.02
SNX1-210ENST00000560260 PPANQ9NQ55 473 aaKnown RBP21.4■■□□□ 1.02
SNX1-210ENST00000560260 SIRPGQ9P1W8 387 aa21.4■■□□□ 1.02
SNX1-210ENST00000560260 CDV3Q9UKY7 258 aaKnown RBP21.4■■□□□ 1.02
SNX1-210ENST00000560260 DOLKQ9UPQ8 538 aa21.4■■□□□ 1.02
SNX1-210ENST00000560260 CRYL1Q9Y2S2 319 aa21.4■■□□□ 1.02
SNX1-210ENST00000560260 PSAT1Q9Y617 370 aa21.4■■□□□ 1.02
SNX1-210ENST00000560260 DNMT3AQ9Y6K1 912 aaPredicted RBP21.4■■□□□ 1.02
SNX1-210ENST00000560260 MGAT4DA6NG13 374 aa21.39■■□□□ 1.01
SNX1-210ENST00000560260 CXorf49A8MYA2 514 aaPredicted RBP21.39■■□□□ 1.01
SNX1-210ENST00000560260 B4DGG1 531 aa21.39■■□□□ 1.01
SNX1-210ENST00000560260 HAUS5O94927 633 aa21.39■■□□□ 1.01
SNX1-210ENST00000560260 FMO4P31512 558 aa21.39■■□□□ 1.01
SNX1-210ENST00000560260 VSNL1P62760 191 aa21.39■■□□□ 1.01
SNX1-210ENST00000560260 KYNUQ16719 465 aa21.39■■□□□ 1.01
SNX1-210ENST00000560260 ERCC6LQ2NKX8 1250 aa21.39■■□□□ 1.01
SNX1-210ENST00000560260 INAVAQ3KP66 663 aa21.39■■□□□ 1.01
SNX1-210ENST00000560260 ZNF549Q6P9A3 640 aa21.39■■□□□ 1.01
SNX1-210ENST00000560260 CNSTQ6PJW8 725 aa21.39■■□□□ 1.01
SNX1-210ENST00000560260 LVRNQ6Q4G3 990 aa21.39■■□□□ 1.01
SNX1-210ENST00000560260 KRT222Q8N1A0 295 aa21.39■■□□□ 1.01
SNX1-210ENST00000560260 DEFB124Q8NES8 71 aa21.39■■□□□ 1.01
SNX1-210ENST00000560260 OR2L2Q8NH16 312 aa21.39■■□□□ 1.01
SNX1-210ENST00000560260 SCG3Q8WXD2 468 aaKnown RBP21.39■■□□□ 1.01
SNX1-210ENST00000560260 PRDM8Q9NQV8 689 aa21.39■■□□□ 1.01
SNX1-210ENST00000560260 SNX2O60749 519 aa21.38■■□□□ 1.01
SNX1-210ENST00000560260 NIPSNAP2O75323 286 aa21.38■■□□□ 1.01
SNX1-210ENST00000560260 GSTA2P09210 222 aa21.38■■□□□ 1.01
SNX1-210ENST00000560260 OR56A5P0C7T3 313 aa21.38■■□□□ 1.01
SNX1-210ENST00000560260 ALPPL2P10696 532 aa21.38■■□□□ 1.01
SNX1-210ENST00000560260 BRAFP15056 766 aa21.38■■□□□ 1.01
SNX1-210ENST00000560260 LEPRP48357 1165 aaKnown RBP21.38■■□□□ 1.01
SNX1-210ENST00000560260 NAA30Q147X3 362 aaPredicted RBP21.38■■□□□ 1.01
SNX1-210ENST00000560260 ZCCHC8Q6NZY4 707 aaKnown RBP21.38■■□□□ 1.01
SNX1-210ENST00000560260 OGFOD3Q6PK18 319 aa21.38■■□□□ 1.01
SNX1-210ENST00000560260 NAPRTQ6XQN6 538 aa21.38■■□□□ 1.01
SNX1-210ENST00000560260 C3orf62Q6ZUJ4 267 aa21.38■■□□□ 1.01
SNX1-210ENST00000560260 NAGSQ8N159 534 aa21.38■■□□□ 1.01
SNX1-210ENST00000560260 FAM181AQ8N9Y4 354 aa21.38■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms