RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 FDFT1P37268 417 aa15.75■□□□□ 0.11
CCDC88C-209ENST00000554872 HALP42357 657 aa15.75■□□□□ 0.11
CCDC88C-209ENST00000554872 PTPRCAPQ14761 206 aa15.75■□□□□ 0.11
CCDC88C-209ENST00000554872 PLA2G4EQ3MJ16 856 aa15.75■□□□□ 0.11
CCDC88C-209ENST00000554872 METRNLQ641Q3 311 aa15.75■□□□□ 0.11
CCDC88C-209ENST00000554872 ZNF761Q86XN6 746 aaPredicted RBP15.75■□□□□ 0.11
CCDC88C-209ENST00000554872 PLXDC1Q8IUK5 500 aa15.75■□□□□ 0.11
CCDC88C-209ENST00000554872 NXPE1Q8N323 547 aa15.75■□□□□ 0.11
CCDC88C-209ENST00000554872 BMPERQ8N8U9 685 aa15.75■□□□□ 0.11
CCDC88C-209ENST00000554872 OR13C4Q8NGS5 318 aa15.75■□□□□ 0.11
CCDC88C-209ENST00000554872 OR2L2Q8NH16 312 aa15.75■□□□□ 0.11
CCDC88C-209ENST00000554872 STYXQ8WUJ0 223 aa15.75■□□□□ 0.11
CCDC88C-209ENST00000554872 ZFPM2Q8WW38 1151 aa15.75■□□□□ 0.11
CCDC88C-209ENST00000554872 ATG4AQ8WYN0 398 aa15.75■□□□□ 0.11
CCDC88C-209ENST00000554872 NAF1Q96HR8 494 aaKnown RBP15.75■□□□□ 0.11
CCDC88C-209ENST00000554872 TMEM9Q9P0T7 183 aa15.75■□□□□ 0.11
CCDC88C-209ENST00000554872 EPHA6Q9UF33 1036 aa15.75■□□□□ 0.11
CCDC88C-209ENST00000554872 RIMKLBQ9ULI2 386 aa15.75■□□□□ 0.11
CCDC88C-209ENST00000554872 DNAJC16Q9Y2G8 782 aa15.75■□□□□ 0.11
CCDC88C-209ENST00000554872 KCTD3Q9Y597 815 aa15.75■□□□□ 0.11
CCDC88C-209ENST00000554872 ATMQ13315 3056 aa15.74■□□□□ 0.11
CCDC88C-209ENST00000554872 MGAT4DA6NG13 374 aa15.74■□□□□ 0.11
CCDC88C-209ENST00000554872 K7ENP7 123 aa15.74■□□□□ 0.11
CCDC88C-209ENST00000554872 SGTAO43765 313 aa15.74■□□□□ 0.11
CCDC88C-209ENST00000554872 UBXN7O94888 489 aa15.74■□□□□ 0.11
CCDC88C-209ENST00000554872 GSTM1P09488 218 aa15.74■□□□□ 0.11
CCDC88C-209ENST00000554872 RALBP11234 206 aa15.74■□□□□ 0.11
CCDC88C-209ENST00000554872 CCL4P13236 92 aa15.74■□□□□ 0.11
CCDC88C-209ENST00000554872 AKT1P31749 480 aa15.74■□□□□ 0.11
CCDC88C-209ENST00000554872 PRLHRP49683 370 aa15.74■□□□□ 0.11
CCDC88C-209ENST00000554872 GSTM4Q03013 218 aa15.74■□□□□ 0.11
CCDC88C-209ENST00000554872 VAC14Q08AM6 782 aa15.74■□□□□ 0.11
CCDC88C-209ENST00000554872 SEMA5AQ13591 1074 aa15.74■□□□□ 0.11
CCDC88C-209ENST00000554872 SPARCL1Q14515 664 aa15.74■□□□□ 0.11
CCDC88C-209ENST00000554872 SIX1Q15475 284 aaPredicted RBP15.74■□□□□ 0.11
CCDC88C-209ENST00000554872 CCNG2Q16589 344 aa15.74■□□□□ 0.11
CCDC88C-209ENST00000554872 SOWAHCQ53LP3 525 aaPredicted RBP15.74■□□□□ 0.11
CCDC88C-209ENST00000554872 INO80CQ6PI98 192 aaPredicted RBP15.74■□□□□ 0.11
CCDC88C-209ENST00000554872 TMEM220Q6QAJ8 160 aa15.74■□□□□ 0.11
CCDC88C-209ENST00000554872 JAMLQ86YT9 394 aa15.74■□□□□ 0.11
CCDC88C-209ENST00000554872 TRIM48Q8IWZ4 208 aa15.74■□□□□ 0.11
CCDC88C-209ENST00000554872 BEND7Q8N7W2 519 aaPredicted RBP15.74■□□□□ 0.11
CCDC88C-209ENST00000554872 RCBTB1Q8NDN9 531 aa15.74■□□□□ 0.11
CCDC88C-209ENST00000554872 MAIP1Q8WWC4 291 aa15.74■□□□□ 0.11
CCDC88C-209ENST00000554872 PEX13Q92968 403 aa15.74■□□□□ 0.11
CCDC88C-209ENST00000554872 USP7Q93009 1102 aa15.74■□□□□ 0.11
CCDC88C-209ENST00000554872 WBP1Q96G27 269 aa15.74■□□□□ 0.11
CCDC88C-209ENST00000554872 TEFMQ96QE5 360 aaKnown RBP15.74■□□□□ 0.11
CCDC88C-209ENST00000554872 CCNL2Q96S94 520 aaPredicted RBP15.74■□□□□ 0.11
CCDC88C-209ENST00000554872 TBC1D10AQ9BXI6 508 aa15.74■□□□□ 0.11
CCDC88C-209ENST00000554872 ASPSCR1Q9BZE9 553 aa15.74■□□□□ 0.11
CCDC88C-209ENST00000554872 OGFRQ9NZT2 677 aa15.74■□□□□ 0.11
CCDC88C-209ENST00000554872 FOXJ2Q9P0K8 574 aa15.74■□□□□ 0.11
CCDC88C-209ENST00000554872 ACSL5Q9ULC5 683 aa15.74■□□□□ 0.11
CCDC88C-209ENST00000554872 WDR37Q9Y2I8 494 aa15.74■□□□□ 0.11
CCDC88C-209ENST00000554872 KALRNO60229 2985 aa15.74■□□□□ 0.11
CCDC88C-209ENST00000554872 C17orf113A0A1B0GUU1 675 aa15.73■□□□□ 0.11
CCDC88C-209ENST00000554872 CFAP99D6REC4 459 aa15.73■□□□□ 0.11
CCDC88C-209ENST00000554872 RPL10P27635 214 aaKnown RBP15.73■□□□□ 0.11
CCDC88C-209ENST00000554872 CAPZBP47756 277 aa15.73■□□□□ 0.11
CCDC88C-209ENST00000554872 CXADRP78310 365 aa15.73■□□□□ 0.11
CCDC88C-209ENST00000554872 RHDQ02161 417 aa15.73■□□□□ 0.11
CCDC88C-209ENST00000554872 LAMB3Q13751 1172 aa15.73■□□□□ 0.11
CCDC88C-209ENST00000554872 CLCA4Q14CN2 919 aa15.73■□□□□ 0.11
CCDC88C-209ENST00000554872 XKR5Q6UX68 686 aa15.73■□□□□ 0.11
CCDC88C-209ENST00000554872 C4orf22Q6V702 233 aa15.73■□□□□ 0.11
CCDC88C-209ENST00000554872 NCSTNQ92542 709 aa15.73■□□□□ 0.11
CCDC88C-209ENST00000554872 CXorf40BQ96DE9 158 aa15.73■□□□□ 0.11
CCDC88C-209ENST00000554872 DNAJC1Q96KC8 554 aaKnown RBP15.73■□□□□ 0.11
CCDC88C-209ENST00000554872 RANBP9Q96S59 729 aa15.73■□□□□ 0.11
CCDC88C-209ENST00000554872 COPS8Q99627 209 aa15.73■□□□□ 0.11
CCDC88C-209ENST00000554872 ZPBPQ9BS86 351 aa15.73■□□□□ 0.11
CCDC88C-209ENST00000554872 TLR10Q9BXR5 811 aa15.73■□□□□ 0.11
CCDC88C-209ENST00000554872 LZTFL1Q9NQ48 299 aa15.73■□□□□ 0.11
CCDC88C-209ENST00000554872 FBXO8Q9NRD0 319 aa15.73■□□□□ 0.11
CCDC88C-209ENST00000554872 ZDHHC3Q9NYG2 299 aa15.73■□□□□ 0.11
CCDC88C-209ENST00000554872 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.73■□□□□ 0.11
CCDC88C-209ENST00000554872 SEMA5BQ9P283 1151 aa15.73■□□□□ 0.11
CCDC88C-209ENST00000554872 CRLS1Q9UJA2 301 aa15.73■□□□□ 0.11
CCDC88C-209ENST00000554872 SLC30A1Q9Y6M5 507 aa15.73■□□□□ 0.11
CCDC88C-209ENST00000554872 OR2AG2A6NM03 316 aa15.72■□□□□ 0.11
CCDC88C-209ENST00000554872 OR52A4PA6NMU1 304 aa15.72■□□□□ 0.11
CCDC88C-209ENST00000554872 STMND1H3BQB6 276 aa15.72■□□□□ 0.11
CCDC88C-209ENST00000554872 ERVH48-1M5A8F1 160 aa15.72■□□□□ 0.11
CCDC88C-209ENST00000554872 ATXN7O15265 892 aaPredicted RBP15.72■□□□□ 0.11
CCDC88C-209ENST00000554872 ACRV1P26436 265 aa15.72■□□□□ 0.11
CCDC88C-209ENST00000554872 MC4RP32245 332 aa15.72■□□□□ 0.11
CCDC88C-209ENST00000554872 ARSDP51689 593 aa15.72■□□□□ 0.11
CCDC88C-209ENST00000554872 MAPK10P53779 464 aa15.72■□□□□ 0.11
CCDC88C-209ENST00000554872 DRG2P55039 364 aaKnown RBP15.72■□□□□ 0.11
CCDC88C-209ENST00000554872 MC2RQ01718 297 aa15.72■□□□□ 0.11
CCDC88C-209ENST00000554872 CDH17Q12864 832 aa15.72■□□□□ 0.11
CCDC88C-209ENST00000554872 GPR18Q14330 331 aa15.72■□□□□ 0.11
CCDC88C-209ENST00000554872 NFE2L1Q14494 772 aa15.72■□□□□ 0.11
CCDC88C-209ENST00000554872 SEPT7Q16181 437 aaKnown RBP15.72■□□□□ 0.11
CCDC88C-209ENST00000554872 RPE65Q16518 533 aa15.72■□□□□ 0.11
CCDC88C-209ENST00000554872 ZNF658BQ4V348 819 aaPredicted RBP15.72■□□□□ 0.11
CCDC88C-209ENST00000554872 FNBP1LQ5T0N5 605 aa15.72■□□□□ 0.11
CCDC88C-209ENST00000554872 FAM83HQ6ZRV2 1179 aaPredicted RBP15.72■□□□□ 0.11
CCDC88C-209ENST00000554872 PRSS42Q7Z5A4 293 aa15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms