RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 COL28A1Q2UY09 1125 aa12.3□□□□□ -0.44
SHMT2-214ENST00000554604 C14orf28Q4W4Y0 310 aa12.3□□□□□ -0.44
SHMT2-214ENST00000554604 TEX44Q53QW1 395 aa12.3□□□□□ -0.44
SHMT2-214ENST00000554604 C3orf38Q5JPI3 329 aa12.3□□□□□ -0.44
SHMT2-214ENST00000554604 OGFOD3Q6PK18 319 aa12.3□□□□□ -0.44
SHMT2-214ENST00000554604 SLC30A9Q6PML9 568 aa12.3□□□□□ -0.44
SHMT2-214ENST00000554604 CAPN12Q6ZSI9 719 aa12.3□□□□□ -0.44
SHMT2-214ENST00000554604 MARK2Q7KZI7 788 aaKnown RBP12.3□□□□□ -0.44
SHMT2-214ENST00000554604 TRIM74Q86UV6 250 aa12.3□□□□□ -0.44
SHMT2-214ENST00000554604 NLRP8Q86W28 1048 aa12.3□□□□□ -0.44
SHMT2-214ENST00000554604 IGDCC3Q8IVU1 814 aa12.3□□□□□ -0.44
SHMT2-214ENST00000554604 RAVER1Q8IY67 606 aaKnown RBP12.3□□□□□ -0.44
SHMT2-214ENST00000554604 SRRM1Q8IYB3 904 aaKnown RBP12.3□□□□□ -0.44
SHMT2-214ENST00000554604 LSMEM2Q8N112 164 aa12.3□□□□□ -0.44
SHMT2-214ENST00000554604 Q8N9G6 341 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-214ENST00000554604 GPR156Q8NFN8 814 aa12.3□□□□□ -0.44
SHMT2-214ENST00000554604 GPBAR1Q8TDU6 330 aa12.3□□□□□ -0.44
SHMT2-214ENST00000554604 ATXN7L3BQ96GX2 97 aa12.3□□□□□ -0.44
SHMT2-214ENST00000554604 SGSM3Q96HU1 749 aa12.3□□□□□ -0.44
SHMT2-214ENST00000554604 ZNF317Q96PQ6 595 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-214ENST00000554604 LYSMD1Q96S90 227 aa12.3□□□□□ -0.44
SHMT2-214ENST00000554604 PAFAH2Q99487 392 aa12.3□□□□□ -0.44
SHMT2-214ENST00000554604 FAM83DQ9H4H8 585 aa12.3□□□□□ -0.44
SHMT2-214ENST00000554604 TRABDQ9H4I3 376 aa12.3□□□□□ -0.44
SHMT2-214ENST00000554604 GLOD4Q9HC38 313 aa12.3□□□□□ -0.44
SHMT2-214ENST00000554604 RSPH14Q9UHP6 348 aa12.3□□□□□ -0.44
SHMT2-214ENST00000554604 RALYQ9UKM9 306 aaKnown RBP12.3□□□□□ -0.44
SHMT2-214ENST00000554604 SLC17A4Q9Y2C5 497 aa12.3□□□□□ -0.44
SHMT2-214ENST00000554604 TMEM98Q9Y2Y6 226 aa12.3□□□□□ -0.44
SHMT2-214ENST00000554604 AHCTF1Q8WYP5 2266 aa12.3□□□□□ -0.44
SHMT2-214ENST00000554604 IGSF10Q6WRI0 2623 aa12.29□□□□□ -0.44
SHMT2-214ENST00000554604 A0A087WV48 116 aa12.29□□□□□ -0.44
SHMT2-214ENST00000554604 TCRBV9S1A1TA0A576 114 aa12.29□□□□□ -0.44
SHMT2-214ENST00000554604 TLX3O43711 291 aaPredicted RBP12.29□□□□□ -0.44
SHMT2-214ENST00000554604 NOBOXO60393 691 aa12.29□□□□□ -0.44
SHMT2-214ENST00000554604 PMPCBO75439 489 aa12.29□□□□□ -0.44
SHMT2-214ENST00000554604 SOD1P00441 154 aa12.29□□□□□ -0.44
SHMT2-214ENST00000554604 SLC4A1P02730 911 aa12.29□□□□□ -0.44
SHMT2-214ENST00000554604 FUCA1P04066 466 aa12.29□□□□□ -0.44
SHMT2-214ENST00000554604 RPLP0P05388 317 aaKnown RBP12.29□□□□□ -0.44
SHMT2-214ENST00000554604 PIRTP0C851 137 aa12.29□□□□□ -0.44
SHMT2-214ENST00000554604 CREB1P16220 341 aa12.29□□□□□ -0.44
SHMT2-214ENST00000554604 DRD4P21917 467 aa12.29□□□□□ -0.44
SHMT2-214ENST00000554604 PTPN3P26045 913 aa12.29□□□□□ -0.44
SHMT2-214ENST00000554604 MSH2P43246 934 aa12.29□□□□□ -0.44
SHMT2-214ENST00000554604 SPINT3P49223 89 aa12.29□□□□□ -0.44
SHMT2-214ENST00000554604 CCL7P80098 99 aa12.29□□□□□ -0.44
SHMT2-214ENST00000554604 CTBSQ01459 385 aa12.29□□□□□ -0.44
SHMT2-214ENST00000554604 CDK18Q07002 472 aa12.29□□□□□ -0.44
SHMT2-214ENST00000554604 TBC1D25Q3MII6 688 aa12.29□□□□□ -0.44
SHMT2-214ENST00000554604 CERCAMQ5T4B2 595 aa12.29□□□□□ -0.44
SHMT2-214ENST00000554604 MICALCLQ6ZW33 695 aa12.29□□□□□ -0.44
SHMT2-214ENST00000554604 CYS1Q717R9 158 aa12.29□□□□□ -0.44
SHMT2-214ENST00000554604 LYSMD3Q7Z3D4 306 aa12.29□□□□□ -0.44
SHMT2-214ENST00000554604 GALNT13Q8IUC8 556 aa12.29□□□□□ -0.44
SHMT2-214ENST00000554604 CCNJLQ8IV13 435 aa12.29□□□□□ -0.44
SHMT2-214ENST00000554604 AGGF1Q8N302 714 aaeCLIP12.29□□□□□ -0.44
SHMT2-214ENST00000554604 SPATA22Q8NHS9 363 aa12.29□□□□□ -0.44
SHMT2-214ENST00000554604 SNIP1Q8TAD8 396 aaKnown RBP12.29□□□□□ -0.44
SHMT2-214ENST00000554604 ZDHHC1Q8WTX9 485 aa12.29□□□□□ -0.44
SHMT2-214ENST00000554604 DCAKDQ8WVC6 231 aa12.29□□□□□ -0.44
SHMT2-214ENST00000554604 SIGLEC10Q96LC7 697 aa12.29□□□□□ -0.44
SHMT2-214ENST00000554604 TEKT5Q96M29 485 aa12.29□□□□□ -0.44
SHMT2-214ENST00000554604 OR2M4Q96R27 311 aa12.29□□□□□ -0.44
SHMT2-214ENST00000554604 AGAP2Q99490 1192 aa12.29□□□□□ -0.44
SHMT2-214ENST00000554604 VAT1Q99536 393 aa12.29□□□□□ -0.44
SHMT2-214ENST00000554604 GPR63Q9BZJ6 419 aa12.29□□□□□ -0.44
SHMT2-214ENST00000554604 ZFYVE1Q9HBF4 777 aa12.29□□□□□ -0.44
SHMT2-214ENST00000554604 KCNK9Q9NPC2 374 aa12.29□□□□□ -0.44
SHMT2-214ENST00000554604 SPATS2LQ9NUQ6 558 aaKnown RBP12.29□□□□□ -0.44
SHMT2-214ENST00000554604 NKIRAS1Q9NYS0 192 aa12.29□□□□□ -0.44
SHMT2-214ENST00000554604 UBP1Q9NZI7 540 aa12.29□□□□□ -0.44
SHMT2-214ENST00000554604 TAAR2Q9P1P5 351 aa12.29□□□□□ -0.44
SHMT2-214ENST00000554604 KLHL8Q9P2G9 620 aaPredicted RBP12.29□□□□□ -0.44
SHMT2-214ENST00000554604 LRIT1Q9P2V4 623 aa12.29□□□□□ -0.44
SHMT2-214ENST00000554604 ZC3H7BQ9UGR2 993 aaKnown RBP12.29□□□□□ -0.44
SHMT2-214ENST00000554604 SATB2Q9UPW6 733 aa12.29□□□□□ -0.44
SHMT2-214ENST00000554604 ENTPD2Q9Y5L3 495 aa12.29□□□□□ -0.44
SHMT2-214ENST00000554604 SCN8AQ9UQD0 1980 aa12.29□□□□□ -0.44
SHMT2-214ENST00000554604 IQANK1A0A1B0GTG1 560 aa12.28□□□□□ -0.44
SHMT2-214ENST00000554604 RGSL1A5PLK6 1076 aa12.28□□□□□ -0.44
SHMT2-214ENST00000554604 ERI2A8K979 691 aaKnown RBP12.28□□□□□ -0.44
SHMT2-214ENST00000554604 RHPN2P1A8MT19 583 aa12.28□□□□□ -0.44
SHMT2-214ENST00000554604 TMX2-CTNND1H3BSU7 103 aa12.28□□□□□ -0.44
SHMT2-214ENST00000554604 NTN3O00634 580 aaPredicted RBP12.28□□□□□ -0.44
SHMT2-214ENST00000554604 CASC3O15234 703 aaKnown RBP12.28□□□□□ -0.44
SHMT2-214ENST00000554604 ZW10O43264 779 aa12.28□□□□□ -0.44
SHMT2-214ENST00000554604 NUDT21O43809 227 aaKnown RBP12.28□□□□□ -0.44
SHMT2-214ENST00000554604 FAM155BO75949 473 aa12.28□□□□□ -0.44
SHMT2-214ENST00000554604 NDST3O95803 873 aa12.28□□□□□ -0.44
SHMT2-214ENST00000554604 MT-CYBP00156 380 aaPredicted RBP12.28□□□□□ -0.44
SHMT2-214ENST00000554604 C1QAP02745 245 aa12.28□□□□□ -0.44
SHMT2-214ENST00000554604 PNLIPP16233 465 aa12.28□□□□□ -0.44
SHMT2-214ENST00000554604 KRT15P19012 456 aa12.28□□□□□ -0.44
SHMT2-214ENST00000554604 AK4P27144 223 aaPredicted RBP12.28□□□□□ -0.44
SHMT2-214ENST00000554604 RBMS1P29558 406 aaKnown RBP12.28□□□□□ -0.44
SHMT2-214ENST00000554604 EIF2S3P41091 472 aaKnown RBP12.28□□□□□ -0.44
SHMT2-214ENST00000554604 ACTR1BP42025 376 aa12.28□□□□□ -0.44
SHMT2-214ENST00000554604 ABCG1P45844 678 aa12.28□□□□□ -0.44
SHMT2-214ENST00000554604 ACTR1AP61163 376 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms