RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 USP51Q70EK9 711 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 RNF180Q86T96 592 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 AFAP1L2Q8N4X5 818 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 BPIFB6Q8NFQ5 453 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 OR13C4Q8NGS5 318 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 SPPL2BQ8TCT7 592 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 PTERQ96BW5 349 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 CASD1Q96PB1 797 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 SMIM14Q96QK8 99 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 HERC2P3Q9BVR0 1158 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 GSTO2Q9H4Y5 243 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 ALG9Q9H6U8 611 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 RMND5AQ9H871 391 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 PDFQ9HBH1 243 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 ABT1Q9ULW3 272 aaKnown RBP12.12□□□□□ -0.47
SHMT2-207ENST00000553837 CASP8AP2Q9UKL3 1982 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 TANC1Q9C0D5 1861 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 ACOX3O15254 700 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 ADAM12O43184 909 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 IDH3BO43837 385 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 TBC1D4O60343 1298 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 PRAMEF11O60813 436 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 NBNO60934 754 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 SLC4A1P02730 911 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 NAT2P11245 290 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 HDCP19113 662 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 TGM1P22735 817 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 RPS9P46781 194 aaKnown RBP12.12□□□□□ -0.47
SHMT2-207ENST00000553837 RAD23AP54725 363 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 SF3B4Q15427 424 aaKnown RBP eCLIP12.12□□□□□ -0.473e-8■■■■■ 35.5
SHMT2-207ENST00000553837 AGAP9Q5VTM2 703 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 GTF2IRD2BQ6EKJ0 949 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 CHST15Q7LFX5 561 aaPredicted RBP12.12□□□□□ -0.47
SHMT2-207ENST00000553837 ISCA2Q86U28 154 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 CUZD1Q86UP6 607 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 GTF2IRD2Q86UP8 949 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 GRAMD2AQ8IUY3 354 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 MMAAQ8IVH4 418 aaKnown RBP12.12□□□□□ -0.47
SHMT2-207ENST00000553837 DDIASQ8IXT1 998 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 CMTR2Q8IYT2 770 aaKnown RBP12.12□□□□□ -0.47
SHMT2-207ENST00000553837 BCL7CQ8WUZ0 217 aaPredicted RBP12.12□□□□□ -0.47
SHMT2-207ENST00000553837 ERLEC1Q96DZ1 483 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 CSF3RQ99062 836 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 TLR8Q9NR97 1041 aaKnown RBP12.12□□□□□ -0.47
SHMT2-207ENST00000553837 POLR3BQ9NW08 1133 aaPredicted RBP12.12□□□□□ -0.47
SHMT2-207ENST00000553837 LOC105371267A0A1B0GV96 52 aa12.11□□□□□ -0.47
SHMT2-207ENST00000553837 H0YAE9 185 aa12.11□□□□□ -0.47
SHMT2-207ENST00000553837 ENPP3O14638 875 aa12.11□□□□□ -0.47
SHMT2-207ENST00000553837 GOT2P00505 430 aaKnown RBP12.11□□□□□ -0.47
SHMT2-207ENST00000553837 S100BP04271 92 aaPredicted RBP12.11□□□□□ -0.47
SHMT2-207ENST00000553837 ZDHHC11BP0C7U3 371 aa12.11□□□□□ -0.47
SHMT2-207ENST00000553837 ATF6P18850 670 aa12.11□□□□□ -0.47
SHMT2-207ENST00000553837 TACR2P21452 398 aa12.11□□□□□ -0.47
SHMT2-207ENST00000553837 RCVRNP35243 200 aa12.11□□□□□ -0.47
SHMT2-207ENST00000553837 YAP1P46937 504 aaKnown RBP12.11□□□□□ -0.47
SHMT2-207ENST00000553837 RGRP47804 291 aa12.11□□□□□ -0.47
SHMT2-207ENST00000553837 ACVR1Q04771 509 aa12.11□□□□□ -0.47
SHMT2-207ENST00000553837 SELENBP1Q13228 472 aa12.11□□□□□ -0.47
SHMT2-207ENST00000553837 ACAP2Q15057 778 aa12.11□□□□□ -0.47
SHMT2-207ENST00000553837 PRSS55Q6UWB4 352 aaPredicted RBP12.11□□□□□ -0.47
SHMT2-207ENST00000553837 SPPL2CQ8IUH8 684 aa12.11□□□□□ -0.47
SHMT2-207ENST00000553837 PARP8Q8N3A8 854 aa12.11□□□□□ -0.47
SHMT2-207ENST00000553837 LEMD2Q8NC56 503 aa12.11□□□□□ -0.47
SHMT2-207ENST00000553837 TRPV3Q8NET8 790 aa12.11□□□□□ -0.47
SHMT2-207ENST00000553837 OR7D4Q8NG98 312 aa12.11□□□□□ -0.47
SHMT2-207ENST00000553837 FAM110BQ8TC76 370 aa12.11□□□□□ -0.47
SHMT2-207ENST00000553837 BLOC1S5Q8TDH9 187 aa12.11□□□□□ -0.47
SHMT2-207ENST00000553837 MYRFLQ96LU7 910 aa12.11□□□□□ -0.47
SHMT2-207ENST00000553837 HOPXQ9BPY8 73 aaPredicted RBP12.11□□□□□ -0.47
SHMT2-207ENST00000553837 LHPPQ9H008 270 aa12.11□□□□□ -0.47
SHMT2-207ENST00000553837 MOV10Q9HCE1 1003 aaKnown RBP12.11□□□□□ -0.47
SHMT2-207ENST00000553837 TMEM161AQ9NX61 479 aa12.11□□□□□ -0.47
SHMT2-207ENST00000553837 POU2F3Q9UKI9 436 aa12.11□□□□□ -0.47
SHMT2-207ENST00000553837 TET1Q8NFU7 2136 aa12.11□□□□□ -0.47
SHMT2-207ENST00000553837 A0A1W2PQ45 241 aaPredicted RBP12.11□□□□□ -0.47
SHMT2-207ENST00000553837 A0A1W2PQY0 241 aa12.11□□□□□ -0.47
SHMT2-207ENST00000553837 LRRC14BA6NHZ5 514 aa12.11□□□□□ -0.47
SHMT2-207ENST00000553837 OR6C75A6NL08 312 aa12.11□□□□□ -0.47
SHMT2-207ENST00000553837 PPP6CO00743 305 aa12.11□□□□□ -0.47
SHMT2-207ENST00000553837 EI24O14681 340 aa12.11□□□□□ -0.47
SHMT2-207ENST00000553837 SYNCRIPO60506 623 aaKnown RBP12.11□□□□□ -0.47
SHMT2-207ENST00000553837 TLR5O60602 858 aa12.11□□□□□ -0.47
SHMT2-207ENST00000553837 ABCB7O75027 752 aa12.11□□□□□ -0.47
SHMT2-207ENST00000553837 HOXD9P28356 352 aaPredicted RBP12.11□□□□□ -0.47
SHMT2-207ENST00000553837 KRT6CP48668 564 aa12.11□□□□□ -0.47
SHMT2-207ENST00000553837 ADARB1P78563 741 aaKnown RBP12.11□□□□□ -0.47
SHMT2-207ENST00000553837 BNIP2Q12982 314 aa12.11□□□□□ -0.47
SHMT2-207ENST00000553837 GPR17Q13304 367 aa12.11□□□□□ -0.47
SHMT2-207ENST00000553837 PLCL1Q15111 1095 aa12.11□□□□□ -0.47
SHMT2-207ENST00000553837 PARP15Q460N3 678 aa12.11□□□□□ -0.47
SHMT2-207ENST00000553837 LDLRAP1Q5SW96 308 aa12.11□□□□□ -0.47
SHMT2-207ENST00000553837 CLEC6AQ6EIG7 209 aa12.11□□□□□ -0.47
SHMT2-207ENST00000553837 PRMT9Q6P2P2 845 aa12.11□□□□□ -0.47
SHMT2-207ENST00000553837 GALNT7Q86SF2 657 aa12.11□□□□□ -0.47
SHMT2-207ENST00000553837 LGI2Q8N0V4 545 aa12.11□□□□□ -0.47
SHMT2-207ENST00000553837 DBF4BQ8NFT6 615 aa12.11□□□□□ -0.47
SHMT2-207ENST00000553837 LILRB4Q8NHJ6 448 aa12.11□□□□□ -0.47
SHMT2-207ENST00000553837 VMP1Q96GC9 406 aa12.11□□□□□ -0.47
SHMT2-207ENST00000553837 MEAF6Q9HAF1 191 aa12.11□□□□□ -0.47
SHMT2-207ENST00000553837 SIAEQ9HAT2 523 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms