RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 POLR3HQ9Y535 204 aaPredicted RBP7.41□□□□□ -1.22
LIMA1-213ENST00000552720 ANAPC1Q9H1A4 1944 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 SCN8AQ9UQD0 1980 aa7.4□□□□□ -1.22
LIMA1-213ENST00000552720 MTMR11A4FU01 709 aa7.4□□□□□ -1.22
LIMA1-213ENST00000552720 SYCE1LA8MT33 242 aa7.4□□□□□ -1.22
LIMA1-213ENST00000552720 H3BNC9 293 aa7.4□□□□□ -1.22
LIMA1-213ENST00000552720 UPK1AO00322 258 aa7.4□□□□□ -1.22
LIMA1-213ENST00000552720 STX16O14662 325 aa7.4□□□□□ -1.22
LIMA1-213ENST00000552720 GIPC1O14908 333 aa7.4□□□□□ -1.22
LIMA1-213ENST00000552720 KLK8O60259 260 aa7.4□□□□□ -1.22
LIMA1-213ENST00000552720 VPS26AO75436 327 aa7.4□□□□□ -1.22
LIMA1-213ENST00000552720 LDLRP01130 860 aa7.4□□□□□ -1.22
LIMA1-213ENST00000552720 CR2P20023 1033 aa7.4□□□□□ -1.22
LIMA1-213ENST00000552720 ZNF157P51786 506 aaPredicted RBP7.4□□□□□ -1.22
LIMA1-213ENST00000552720 ADARB1P78563 741 aaKnown RBP7.4□□□□□ -1.22
LIMA1-213ENST00000552720 CAP1Q01518 475 aa7.4□□□□□ -1.22
LIMA1-213ENST00000552720 EMX2Q04743 252 aa7.4□□□□□ -1.22
LIMA1-213ENST00000552720 CRHR2Q13324 411 aa7.4□□□□□ -1.22
LIMA1-213ENST00000552720 LAPTM5Q13571 262 aa7.4□□□□□ -1.22
LIMA1-213ENST00000552720 PTGR1Q14914 329 aa7.4□□□□□ -1.22
LIMA1-213ENST00000552720 TAF1AQ15573 450 aaPredicted RBP7.4□□□□□ -1.22
LIMA1-213ENST00000552720 TRIM71Q2Q1W2 868 aaKnown RBP7.4□□□□□ -1.22
LIMA1-213ENST00000552720 RFTN2Q52LD8 501 aaPredicted RBP7.4□□□□□ -1.22
LIMA1-213ENST00000552720 ALG1LQ6GMV1 187 aa7.4□□□□□ -1.22
LIMA1-213ENST00000552720 ABRAXAS1Q6UWZ7 409 aa7.4□□□□□ -1.22
LIMA1-213ENST00000552720 XKR5Q6UX68 686 aa7.4□□□□□ -1.22
LIMA1-213ENST00000552720 DNAJC14Q6Y2X3 702 aaPredicted RBP7.4□□□□□ -1.22
LIMA1-213ENST00000552720 TAS2R42Q7RTR8 314 aa7.4□□□□□ -1.22
LIMA1-213ENST00000552720 PATL1Q86TB9 770 aaKnown RBP7.4□□□□□ -1.22
LIMA1-213ENST00000552720 ZFAND4Q86XD8 727 aa7.4□□□□□ -1.22
LIMA1-213ENST00000552720 DENND1CQ8IV53 801 aa7.4□□□□□ -1.22
LIMA1-213ENST00000552720 LRRC43Q8N309 656 aa7.4□□□□□ -1.22
LIMA1-213ENST00000552720 TNIP2Q8NFZ5 429 aa7.4□□□□□ -1.22
LIMA1-213ENST00000552720 METTL6Q8TCB7 284 aa7.4□□□□□ -1.22
LIMA1-213ENST00000552720 ADAMTS16Q8TE57 1224 aa7.4□□□□□ -1.22
LIMA1-213ENST00000552720 SOCS4Q8WXH5 440 aa7.4□□□□□ -1.22
LIMA1-213ENST00000552720 WBP2Q969T9 261 aa7.4□□□□□ -1.22
LIMA1-213ENST00000552720 EID2BQ96D98 161 aa7.4□□□□□ -1.22
LIMA1-213ENST00000552720 PSKH2Q96QS6 385 aa7.4□□□□□ -1.22
LIMA1-213ENST00000552720 OSBPL6Q9BZF3 934 aa7.4□□□□□ -1.22
LIMA1-213ENST00000552720 IKZF5Q9H5V7 419 aa7.4□□□□□ -1.22
LIMA1-213ENST00000552720 GKN1Q9NS71 199 aa7.4□□□□□ -1.22
LIMA1-213ENST00000552720 SUN2Q9UH99 717 aa7.4□□□□□ -1.22
LIMA1-213ENST00000552720 ZMYM5Q9UJ78 669 aa7.4□□□□□ -1.22
LIMA1-213ENST00000552720 TRMT6Q9UJA5 497 aaKnown RBP7.4□□□□□ -1.22
LIMA1-213ENST00000552720 FAF1Q9UNN5 650 aaPredicted RBP7.4□□□□□ -1.22
LIMA1-213ENST00000552720 RAI2Q9Y5P3 530 aa7.4□□□□□ -1.22
LIMA1-213ENST00000552720 C5orf42Q9H799 3197 aa7.4□□□□□ -1.22
LIMA1-213ENST00000552720 FAM234BA2RU67 622 aa7.4□□□□□ -1.23
LIMA1-213ENST00000552720 E5RI56 91 aa7.4□□□□□ -1.23
LIMA1-213ENST00000552720 OR7A17O14581 309 aa7.4□□□□□ -1.23
LIMA1-213ENST00000552720 DFNA5O60443 496 aa7.4□□□□□ -1.23
LIMA1-213ENST00000552720 SNAP91O60641 907 aa7.4□□□□□ -1.23
LIMA1-213ENST00000552720 VPS4BO75351 444 aa7.4□□□□□ -1.23
LIMA1-213ENST00000552720 GUCA1CO95843 209 aa7.4□□□□□ -1.23
LIMA1-213ENST00000552720 CHEK2O96017 543 aa7.4□□□□□ -1.23
LIMA1-213ENST00000552720 KLKB1P03952 638 aa7.4□□□□□ -1.23
LIMA1-213ENST00000552720 HOXB8P17481 243 aaPredicted RBP7.4□□□□□ -1.23
LIMA1-213ENST00000552720 ATF6P18850 670 aa7.4□□□□□ -1.23
LIMA1-213ENST00000552720 NFKBIAP25963 317 aa7.4□□□□□ -1.23
LIMA1-213ENST00000552720 GDF5P43026 501 aa7.4□□□□□ -1.23
LIMA1-213ENST00000552720 OXCT1P55809 520 aa7.4□□□□□ -1.23
LIMA1-213ENST00000552720 EEFSECP57772 596 aaKnown RBP7.4□□□□□ -1.23
LIMA1-213ENST00000552720 IL2P60568 153 aa7.4□□□□□ -1.23
LIMA1-213ENST00000552720 FKBP1BP68106 108 aa7.4□□□□□ -1.23
LIMA1-213ENST00000552720 TRAF2Q12933 501 aa7.4□□□□□ -1.23
LIMA1-213ENST00000552720 ABRAXAS2Q15018 415 aa7.4□□□□□ -1.23
LIMA1-213ENST00000552720 NKG7Q16617 165 aa7.4□□□□□ -1.23
LIMA1-213ENST00000552720 ATP6AP1LQ52LC2 224 aa7.4□□□□□ -1.23
LIMA1-213ENST00000552720 PDCD4Q53EL6 469 aaKnown RBP7.4□□□□□ -1.23
LIMA1-213ENST00000552720 RTP2Q5QGT7 225 aa7.4□□□□□ -1.23
LIMA1-213ENST00000552720 USP51Q70EK9 711 aa7.4□□□□□ -1.23
LIMA1-213ENST00000552720 TAS1R1Q7RTX1 841 aa7.4□□□□□ -1.23
LIMA1-213ENST00000552720 TMEM173Q86WV6 379 aaPredicted RBP7.4□□□□□ -1.23
LIMA1-213ENST00000552720 RASAL3Q86YV0 1011 aa7.4□□□□□ -1.23
LIMA1-213ENST00000552720 RIMKLAQ8IXN7 391 aa7.4□□□□□ -1.23
LIMA1-213ENST00000552720 TBC1D21Q8IYX1 336 aa7.4□□□□□ -1.23
LIMA1-213ENST00000552720 NKAPQ8N5F7 415 aaKnown RBP7.4□□□□□ -1.23
LIMA1-213ENST00000552720 PAPD5Q8NDF8 572 aaKnown RBP7.4□□□□□ -1.23
LIMA1-213ENST00000552720 OR4F6Q8NGB9 312 aa7.4□□□□□ -1.23
LIMA1-213ENST00000552720 OR56A4Q8NGH8 313 aa7.4□□□□□ -1.23
LIMA1-213ENST00000552720 BPIFB1Q8TDL5 484 aa7.4□□□□□ -1.23
LIMA1-213ENST00000552720 TANKQ92844 425 aa7.4□□□□□ -1.23
LIMA1-213ENST00000552720 TMBIM1Q969X1 311 aa7.4□□□□□ -1.23
LIMA1-213ENST00000552720 NSMCE2Q96MF7 247 aa7.4□□□□□ -1.23
LIMA1-213ENST00000552720 FAM193BQ96PV7 902 aaPredicted RBP7.4□□□□□ -1.23
LIMA1-213ENST00000552720 C1QTNF3Q9BXJ4 246 aa7.4□□□□□ -1.23
LIMA1-213ENST00000552720 SCUBE2Q9NQ36 999 aa7.4□□□□□ -1.23
LIMA1-213ENST00000552720 DNAAF2Q9NVR5 837 aaKnown RBP7.4□□□□□ -1.23
LIMA1-213ENST00000552720 TUBA8Q9NY65 449 aaPredicted RBP7.4□□□□□ -1.23
LIMA1-213ENST00000552720 VAPAQ9P0L0 249 aa7.4□□□□□ -1.23
LIMA1-213ENST00000552720 IFT80Q9P2H3 777 aaPredicted RBP7.4□□□□□ -1.23
LIMA1-213ENST00000552720 SEPT3Q9UH03 358 aa7.4□□□□□ -1.23
LIMA1-213ENST00000552720 AGO1Q9UL18 857 aaKnown RBP7.4□□□□□ -1.23
LIMA1-213ENST00000552720 C2orf81A6NN90 581 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 ANKRD66B4E2M5 251 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 FFAR3O14843 346 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 GPR42O15529 346 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 ADAM12O43184 909 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 ACSL4O60488 711 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms