RNA–Protein interactions for RNA: ENST00000552199.5

RAB3IP-216, Transcript of RAB3A interacting protein, human

TSL 1 (best)

Gene RAB3IP, Length 1,905 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RAB3IP-216	ENST00000552199	SDR39U1	Q9NRG7	319 aa	Predicted RBP	13.82	□□□□□ -0.2
RAB3IP-216	ENST00000552199	SPATS2L	Q9NUQ6	558 aa	Known RBP	13.82	□□□□□ -0.2
RAB3IP-216	ENST00000552199	CROT	Q9UKG9	612 aa		13.82	□□□□□ -0.2
RAB3IP-216	ENST00000552199	LRCH1	Q9Y2L9	728 aa		13.82	□□□□□ -0.2
RAB3IP-216	ENST00000552199	RWDD3	Q9Y3V2	267 aa		13.82	□□□□□ -0.2
RAB3IP-216	ENST00000552199	OARD1	Q9Y530	152 aa		13.82	□□□□□ -0.2
RAB3IP-216	ENST00000552199	PIKFYVE	Q9Y2I7	2098 aa		13.82	□□□□□ -0.2
RAB3IP-216	ENST00000552199	LINC01553	A4QN01	128 aa		13.82	□□□□□ -0.2
RAB3IP-216	ENST00000552199	BBIP1	A8MTZ0	92 aa		13.82	□□□□□ -0.2
RAB3IP-216	ENST00000552199	ACOT8	O14734	319 aa		13.82	□□□□□ -0.2
RAB3IP-216	ENST00000552199	MATN4	O95460	622 aa		13.82	□□□□□ -0.2
RAB3IP-216	ENST00000552199	C1S	P09871	688 aa		13.82	□□□□□ -0.2
RAB3IP-216	ENST00000552199	IDO1	P14902	403 aa		13.82	□□□□□ -0.2
RAB3IP-216	ENST00000552199	TCF3	P15923	654 aa		13.82	□□□□□ -0.2
RAB3IP-216	ENST00000552199	NSG1	P42857	185 aa		13.82	□□□□□ -0.2
RAB3IP-216	ENST00000552199	ERVPABLB-1	P60509	514 aa		13.82	□□□□□ -0.2
RAB3IP-216	ENST00000552199	POLR2L	P62875	67 aa	Known RBP	13.82	□□□□□ -0.2
RAB3IP-216	ENST00000552199	CAMK1	Q14012	370 aa		13.82	□□□□□ -0.2
RAB3IP-216	ENST00000552199	CRY1	Q16526	586 aa		13.82	□□□□□ -0.2
RAB3IP-216	ENST00000552199	C18orf21	Q32NC0	220 aa	Predicted RBP	13.82	□□□□□ -0.2
RAB3IP-216	ENST00000552199	TMEM215	Q68D42	235 aa		13.82	□□□□□ -0.2
RAB3IP-216	ENST00000552199	C8orf82	Q6P1X6	216 aa	Predicted RBP	13.82	□□□□□ -0.2
RAB3IP-216	ENST00000552199	RFLNA	Q6ZTI6	216 aa		13.82	□□□□□ -0.2
RAB3IP-216	ENST00000552199	GRASP	Q7Z6J2	395 aa	Predicted RBP	13.82	□□□□□ -0.2
RAB3IP-216	ENST00000552199	OR2A12	Q8NGT7	310 aa		13.82	□□□□□ -0.2
RAB3IP-216	ENST00000552199	GDPD5	Q8WTR4	605 aa		13.82	□□□□□ -0.2
RAB3IP-216	ENST00000552199	PBXIP1	Q96AQ6	731 aa		13.82	□□□□□ -0.2
RAB3IP-216	ENST00000552199	OTUB2	Q96DC9	234 aa		13.82	□□□□□ -0.2
RAB3IP-216	ENST00000552199	KLHL32	Q96NJ5	620 aa		13.82	□□□□□ -0.2
RAB3IP-216	ENST00000552199	CCT7	Q99832	543 aa		13.82	□□□□□ -0.2
RAB3IP-216	ENST00000552199	NOL11	Q9H8H0	719 aa	Known RBP	13.82	□□□□□ -0.2
RAB3IP-216	ENST00000552199	MARK1	Q9P0L2	795 aa		13.82	□□□□□ -0.2
RAB3IP-216	ENST00000552199	B4GALT6	Q9UBX8	382 aa		13.82	□□□□□ -0.2
RAB3IP-216	ENST00000552199	PTBP2	Q9UKA9	531 aa	Known RBP	13.82	□□□□□ -0.2
RAB3IP-216	ENST00000552199	ERVW-1	Q9UQF0	538 aa		13.82	□□□□□ -0.2
RAB3IP-216	ENST00000552199	HCFC2	Q9Y5Z7	792 aa		13.82	□□□□□ -0.2
RAB3IP-216	ENST00000552199	WNT6	Q9Y6F9	365 aa		13.82	□□□□□ -0.2
RAB3IP-216	ENST00000552199	TRIM24	O15164	1050 aa		13.81	□□□□□ -0.2
RAB3IP-216	ENST00000552199	POLR2E	P19388	210 aa	Known RBP	13.81	□□□□□ -0.2
RAB3IP-216	ENST00000552199	MRPL19	P49406	292 aa	Known RBP	13.81	□□□□□ -0.2
RAB3IP-216	ENST00000552199	NME5	P56597	212 aa		13.81	□□□□□ -0.2
RAB3IP-216	ENST00000552199	RPS6KA2	Q15349	733 aa		13.81	□□□□□ -0.2
RAB3IP-216	ENST00000552199	ATP13A5	Q4VNC0	1218 aa		13.81	□□□□□ -0.2
RAB3IP-216	ENST00000552199	ZDHHC20	Q5W0Z9	365 aa		13.81	□□□□□ -0.2
RAB3IP-216	ENST00000552199	ZFP1	Q6P2D0	407 aa		13.81	□□□□□ -0.2
RAB3IP-216	ENST00000552199	GOLGA7	Q7Z5G4	137 aa		13.81	□□□□□ -0.2
RAB3IP-216	ENST00000552199	SPRED2	Q7Z698	418 aa		13.81	□□□□□ -0.2
RAB3IP-216	ENST00000552199	OR52B6	Q8NGF0	335 aa		13.81	□□□□□ -0.2
RAB3IP-216	ENST00000552199	ROPN1L	Q96C74	230 aa		13.81	□□□□□ -0.2
RAB3IP-216	ENST00000552199	ACOX2	Q99424	681 aa		13.81	□□□□□ -0.2
RAB3IP-216	ENST00000552199	COPS8	Q99627	209 aa		13.81	□□□□□ -0.2
RAB3IP-216	ENST00000552199	ECSIT	Q9BQ95	431 aa		13.81	□□□□□ -0.2
RAB3IP-216	ENST00000552199	SLC2A11	Q9BYW1	496 aa		13.81	□□□□□ -0.2
RAB3IP-216	ENST00000552199	KLHL42	Q9P2K6	505 aa		13.81	□□□□□ -0.2
RAB3IP-216	ENST00000552199	PSMD13	Q9UNM6	376 aa		13.81	□□□□□ -0.2
RAB3IP-216	ENST00000552199	NDUFAF1	Q9Y375	327 aa		13.81	□□□□□ -0.2
RAB3IP-216	ENST00000552199	GPR45	Q9Y5Y3	372 aa		13.81	□□□□□ -0.2
RAB3IP-216	ENST00000552199	ST14	Q9Y5Y6	855 aa		13.81	□□□□□ -0.2
RAB3IP-216	ENST00000552199	NR5A2	O00482	541 aa		13.8	□□□□□ -0.2
RAB3IP-216	ENST00000552199	OR7A17	O14581	309 aa		13.8	□□□□□ -0.2
RAB3IP-216	ENST00000552199	TAPBP	O15533	448 aa		13.8	□□□□□ -0.2
RAB3IP-216	ENST00000552199	HSPA8	P11142	646 aa	Known RBP	13.8	□□□□□ -0.2
RAB3IP-216	ENST00000552199	RECQL	P46063	649 aa	Predicted RBP	13.8	□□□□□ -0.2
RAB3IP-216	ENST00000552199	SPINT3	P49223	89 aa		13.8	□□□□□ -0.2
RAB3IP-216	ENST00000552199	GTF2H2	Q13888	395 aa		13.8	□□□□□ -0.2
RAB3IP-216	ENST00000552199	TTLL9	Q3SXZ7	439 aa		13.8	□□□□□ -0.2
RAB3IP-216	ENST00000552199	ZNF697	Q5TEC3	545 aa		13.8	□□□□□ -0.2
RAB3IP-216	ENST00000552199	ANO7	Q6IWH7	933 aa		13.8	□□□□□ -0.2
RAB3IP-216	ENST00000552199	GTF2H2C	Q6P1K8	395 aa		13.8	□□□□□ -0.2
RAB3IP-216	ENST00000552199	LETMD1	Q6P1Q0	360 aa		13.8	□□□□□ -0.2
RAB3IP-216	ENST00000552199	SCIMP	Q6UWF3	145 aa		13.8	□□□□□ -0.2
RAB3IP-216	ENST00000552199	LAYN	Q6UX15	382 aa		13.8	□□□□□ -0.2
RAB3IP-216	ENST00000552199	IZUMO2	Q6UXV1	221 aa		13.8	□□□□□ -0.2
RAB3IP-216	ENST00000552199	RETREG3	Q86VR2	466 aa		13.8	□□□□□ -0.2
RAB3IP-216	ENST00000552199	AHI1	Q8N157	1196 aa		13.8	□□□□□ -0.2
RAB3IP-216	ENST00000552199	NAT16	Q8N8M0	369 aa		13.8	□□□□□ -0.2
RAB3IP-216	ENST00000552199	CDYL2	Q8N8U2	506 aa		13.8	□□□□□ -0.2
RAB3IP-216	ENST00000552199	PCYOX1L	Q8NBM8	494 aa		13.8	□□□□□ -0.2
RAB3IP-216	ENST00000552199	BHLHE22	Q8NFJ8	381 aa	Predicted RBP	13.8	□□□□□ -0.2
RAB3IP-216	ENST00000552199	FRS2	Q8WU20	508 aa		13.8	□□□□□ -0.2
RAB3IP-216	ENST00000552199	MYLIP	Q8WY64	445 aa		13.8	□□□□□ -0.2
RAB3IP-216	ENST00000552199	ULK4	Q96C45	1275 aa		13.8	□□□□□ -0.2
RAB3IP-216	ENST00000552199	ASB9	Q96DX5	294 aa		13.8	□□□□□ -0.2
RAB3IP-216	ENST00000552199	NSUN3	Q9H649	340 aa	Known RBP	13.8	□□□□□ -0.2
RAB3IP-216	ENST00000552199	SPAG4	Q9NPE6	437 aa		13.8	□□□□□ -0.2
RAB3IP-216	ENST00000552199	RIC8B	Q9NVN3	520 aa		13.8	□□□□□ -0.2
RAB3IP-216	ENST00000552199	ELOVL2	Q9NXB9	296 aa		13.8	□□□□□ -0.2
RAB3IP-216	ENST00000552199	KCTD5	Q9NXV2	234 aa		13.8	□□□□□ -0.2
RAB3IP-216	ENST00000552199	TMEM181	Q9P2C4	612 aa		13.8	□□□□□ -0.2
RAB3IP-216	ENST00000552199	SUCO	Q9UBS9	1254 aa	Known RBP	13.8	□□□□□ -0.2
RAB3IP-216	ENST00000552199	CD300A	Q9UGN4	299 aa		13.8	□□□□□ -0.2
RAB3IP-216	ENST00000552199	ZMYM5	Q9UJ78	669 aa		13.8	□□□□□ -0.2
RAB3IP-216	ENST00000552199	ALPK3	Q96L96	1907 aa		13.8	□□□□□ -0.2
RAB3IP-216	ENST00000552199	IGLV3-16	A0A075B6K0	115 aa		13.8	□□□□□ -0.2
RAB3IP-216	ENST00000552199	C5orf67	F2Z3F1	127 aa		13.8	□□□□□ -0.2
RAB3IP-216	ENST00000552199	ZNF197	O14709	1029 aa		13.8	□□□□□ -0.2
RAB3IP-216	ENST00000552199	SLC9A3R1	O14745	358 aa	Predicted RBP	13.8	□□□□□ -0.2
RAB3IP-216	ENST00000552199	CASQ2	O14958	399 aa	Predicted RBP	13.8	□□□□□ -0.2
RAB3IP-216	ENST00000552199	GUCA1C	O95843	209 aa		13.8	□□□□□ -0.2
RAB3IP-216	ENST00000552199	CBSL	P0DN79	551 aa		13.8	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms