RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 TLL2Q9Y6L7 1015 aa16.09■□□□□ 0.17
CUX1-213ENST00000549414 CNOT3O75175 753 aaKnown RBP16.09■□□□□ 0.17
CUX1-213ENST00000549414 CTSEP14091 401 aa16.09■□□□□ 0.17
CUX1-213ENST00000549414 APLP1P51693 650 aa16.09■□□□□ 0.17
CUX1-213ENST00000549414 NAA20P61599 178 aa16.09■□□□□ 0.17
CUX1-213ENST00000549414 MAPK11Q15759 364 aa16.09■□□□□ 0.17
CUX1-213ENST00000549414 GPR107Q5VW38 600 aa16.09■□□□□ 0.17
CUX1-213ENST00000549414 TMEM214Q6NUQ4 689 aaKnown RBP16.09■□□□□ 0.17
CUX1-213ENST00000549414 CFAP206Q8IYR0 622 aa16.09■□□□□ 0.17
CUX1-213ENST00000549414 LIX1Q8N485 282 aa16.09■□□□□ 0.17
CUX1-213ENST00000549414 TSGA13Q96PP4 275 aa16.09■□□□□ 0.17
CUX1-213ENST00000549414 TFB2MQ9H5Q4 396 aaKnown RBP16.09■□□□□ 0.17
CUX1-213ENST00000549414 AASDHPPTQ9NRN7 309 aa16.09■□□□□ 0.17
CUX1-213ENST00000549414 PNPLA3Q9NST1 481 aa16.09■□□□□ 0.17
CUX1-213ENST00000549414 NHSQ6T4R5 1651 aa16.08■□□□□ 0.17
CUX1-213ENST00000549414 PRAMEF11O60813 436 aa16.08■□□□□ 0.17
CUX1-213ENST00000549414 POP4O95707 220 aaKnown RBP16.08■□□□□ 0.17
CUX1-213ENST00000549414 TRBC1P01850 177 aa16.08■□□□□ 0.17
CUX1-213ENST00000549414 SLC35E2BP0CK96 405 aa16.08■□□□□ 0.17
CUX1-213ENST00000549414 ADSLP30566 484 aaPredicted RBP16.08■□□□□ 0.17
CUX1-213ENST00000549414 CD68P34810 354 aaPredicted RBP16.08■□□□□ 0.17
CUX1-213ENST00000549414 CHRNA6Q15825 494 aa16.08■□□□□ 0.17
CUX1-213ENST00000549414 B3GNT6Q6ZMB0 384 aa16.08■□□□□ 0.17
CUX1-213ENST00000549414 GALNT5Q7Z7M9 940 aa16.08■□□□□ 0.17
CUX1-213ENST00000549414 CYP4Z1Q86W10 505 aa16.08■□□□□ 0.17
CUX1-213ENST00000549414 HOMEZQ8IX15 550 aa16.08■□□□□ 0.17
CUX1-213ENST00000549414 CENPIQ92674 756 aaPredicted RBP16.08■□□□□ 0.17
CUX1-213ENST00000549414 NACC2Q96BF6 587 aa16.08■□□□□ 0.17
CUX1-213ENST00000549414 ITCHQ96J02 903 aa16.08■□□□□ 0.17
CUX1-213ENST00000549414 MTERF1Q99551 399 aaKnown RBP16.08■□□□□ 0.17
CUX1-213ENST00000549414 WDR6Q9NNW5 1121 aaKnown RBP16.08■□□□□ 0.17
CUX1-213ENST00000549414 RBM47A0AV96 593 aaKnown RBP16.08■□□□□ 0.16
CUX1-213ENST00000549414 TMCO2Q7Z6W1 182 aaPredicted RBP16.08■□□□□ 0.16
CUX1-213ENST00000549414 ZNF461Q8TAF7 563 aa16.08■□□□□ 0.16
CUX1-213ENST00000549414 COQ10BQ9H8M1 238 aa16.08■□□□□ 0.16
CUX1-213ENST00000549414 IMP3Q9NV31 184 aaKnown RBP16.08■□□□□ 0.16
CUX1-213ENST00000549414 NDOR1Q9UHB4 597 aa16.08■□□□□ 0.16
CUX1-213ENST00000549414 LRRC14BA6NHZ5 514 aa16.08■□□□□ 0.16
CUX1-213ENST00000549414 SERPINI2O75830 405 aa16.08■□□□□ 0.16
CUX1-213ENST00000549414 ZNF37AP17032 561 aaPredicted RBP16.08■□□□□ 0.16
CUX1-213ENST00000549414 DGKQP52824 942 aa16.08■□□□□ 0.16
CUX1-213ENST00000549414 SULT2A1Q06520 285 aa16.08■□□□□ 0.16
CUX1-213ENST00000549414 CBX2Q14781 532 aaPredicted RBP16.08■□□□□ 0.16
CUX1-213ENST00000549414 MORN1Q5T089 497 aa16.08■□□□□ 0.16
CUX1-213ENST00000549414 Q6ZVU0 165 aa16.08■□□□□ 0.16
CUX1-213ENST00000549414 C2CD4AQ8NCU7 369 aaPredicted RBP16.08■□□□□ 0.16
CUX1-213ENST00000549414 ZNF570Q96NI8 536 aa16.08■□□□□ 0.16
CUX1-213ENST00000549414 C3orf18Q9UK00 162 aa16.08■□□□□ 0.16
CUX1-213ENST00000549414 GPSM3Q9Y4H4 160 aa16.08■□□□□ 0.16
CUX1-213ENST00000549414 FAM220BPB1ANY3 271 aa16.08■□□□□ 0.16
CUX1-213ENST00000549414 C1QTNF3-AMACRE9PGA6 284 aa16.08■□□□□ 0.16
CUX1-213ENST00000549414 GLDCP23378 1020 aa16.08■□□□□ 0.16
CUX1-213ENST00000549414 TBC1D21Q8IYX1 336 aa16.08■□□□□ 0.16
CUX1-213ENST00000549414 OR8D1Q8WZ84 308 aa16.08■□□□□ 0.16
CUX1-213ENST00000549414 MIPEPQ99797 713 aa16.08■□□□□ 0.16
CUX1-213ENST00000549414 USE1Q9NZ43 259 aa16.08■□□□□ 0.16
CUX1-213ENST00000549414 KIAA1551Q9HCM1 1747 aa16.07■□□□□ 0.16
CUX1-213ENST00000549414 AURKAO14965 403 aa16.07■□□□□ 0.16
CUX1-213ENST00000549414 COCHO43405 550 aa16.07■□□□□ 0.16
CUX1-213ENST00000549414 OR1I1O60431 355 aa16.07■□□□□ 0.16
CUX1-213ENST00000549414 RPN2P04844 631 aa16.07■□□□□ 0.16
CUX1-213ENST00000549414 EIF2S1P05198 315 aaKnown RBP16.07■□□□□ 0.16
CUX1-213ENST00000549414 GCAP28676 217 aa16.07■□□□□ 0.16
CUX1-213ENST00000549414 CCNFP41002 786 aa16.07■□□□□ 0.16
CUX1-213ENST00000549414 STC1P52823 247 aa16.07■□□□□ 0.16
CUX1-213ENST00000549414 RPS7P62081 194 aaKnown RBP16.07■□□□□ 0.16
CUX1-213ENST00000549414 PPP1R8Q12972 351 aaKnown RBP16.07■□□□□ 0.16
CUX1-213ENST00000549414 SETD9Q8NE22 299 aa16.07■□□□□ 0.16
CUX1-213ENST00000549414 CANT1Q8WVQ1 401 aa16.07■□□□□ 0.16
CUX1-213ENST00000549414 ATAD3AQ9NVI7 634 aa16.07■□□□□ 0.16
CUX1-213ENST00000549414 MAGEL2Q9UJ55 1249 aa16.07■□□□□ 0.16
CUX1-213ENST00000549414 GMPPBQ9Y5P6 360 aa16.07■□□□□ 0.16
CUX1-213ENST00000549414 ACTL7AQ9Y615 435 aa16.07■□□□□ 0.16
CUX1-213ENST00000549414 EVPLQ92817 2033 aa16.07■□□□□ 0.16
CUX1-213ENST00000549414 MAN1A2O60476 641 aa16.07■□□□□ 0.16
CUX1-213ENST00000549414 EPHX1P07099 455 aa16.07■□□□□ 0.16
CUX1-213ENST00000549414 ANXA11P50995 505 aaKnown RBP16.07■□□□□ 0.16
CUX1-213ENST00000549414 NIPAL4Q0D2K0 466 aa16.07■□□□□ 0.16
CUX1-213ENST00000549414 SCAPQ12770 1279 aa16.07■□□□□ 0.16
CUX1-213ENST00000549414 SIM2Q14190 667 aaPredicted RBP16.07■□□□□ 0.16
CUX1-213ENST00000549414 PROX1Q92786 737 aa16.07■□□□□ 0.16
CUX1-213ENST00000549414 RTP4Q96DX8 246 aa16.07■□□□□ 0.16
CUX1-213ENST00000549414 ZFYVE19Q96K21 471 aa16.07■□□□□ 0.16
CUX1-213ENST00000549414 ZNF599Q96NL3 588 aa16.07■□□□□ 0.16
CUX1-213ENST00000549414 TRIM8Q9BZR9 551 aa16.07■□□□□ 0.16
CUX1-213ENST00000549414 RAD18Q9NS91 495 aa16.07■□□□□ 0.16
CUX1-213ENST00000549414 TPRKBQ9Y3C4 175 aa16.07■□□□□ 0.16
CUX1-213ENST00000549414 EFCAB14O75071 495 aa16.07■□□□□ 0.16
CUX1-213ENST00000549414 AGTR2P50052 363 aa16.07■□□□□ 0.16
CUX1-213ENST00000549414 GSCP56915 257 aaPredicted RBP16.07■□□□□ 0.16
CUX1-213ENST00000549414 ZBTB6Q15916 424 aa16.07■□□□□ 0.16
CUX1-213ENST00000549414 CYP20A1Q6UW02 462 aa16.07■□□□□ 0.16
CUX1-213ENST00000549414 CYB5D2Q8WUJ1 264 aa16.07■□□□□ 0.16
CUX1-213ENST00000549414 SLC47A1Q96FL8 570 aa16.07■□□□□ 0.16
CUX1-213ENST00000549414 IMP4Q96G21 291 aaKnown RBP16.07■□□□□ 0.16
CUX1-213ENST00000549414 NSUN5Q96P11 429 aaKnown RBP16.07■□□□□ 0.16
CUX1-213ENST00000549414 TBC1D3DA0A087WVF3 549 aa16.06■□□□□ 0.16
CUX1-213ENST00000549414 TBC1D3IA0A087WXS9 549 aa16.06■□□□□ 0.16
CUX1-213ENST00000549414 TBC1D3EA0A087X179 549 aa16.06■□□□□ 0.16
CUX1-213ENST00000549414 TBC1D3KA0A087X1G2 549 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms