RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 TCRBV21S2A2A0A5A6 115 aa4.02□□□□□ -1.77
VPS29-205ENST00000548539 TMEM178BH3BS89 294 aa4.02□□□□□ -1.77
VPS29-205ENST00000548539 MID1O15344 667 aa4.02□□□□□ -1.77
VPS29-205ENST00000548539 IPO8O15397 1037 aaKnown RBP4.02□□□□□ -1.77
VPS29-205ENST00000548539 NDUFS4O43181 175 aa4.02□□□□□ -1.77
VPS29-205ENST00000548539 TRUB2O95900 331 aaKnown RBP4.02□□□□□ -1.77
VPS29-205ENST00000548539 HOXC6P09630 235 aa4.02□□□□□ -1.77
VPS29-205ENST00000548539 KCNA5P22460 613 aa4.02□□□□□ -1.77
VPS29-205ENST00000548539 TMPOP42166 694 aaKnown RBP4.02□□□□□ -1.77
VPS29-205ENST00000548539 BRWD1-AS2P59051 145 aa4.02□□□□□ -1.77
VPS29-205ENST00000548539 ISL1P61371 349 aa4.02□□□□□ -1.77
VPS29-205ENST00000548539 SNRPEP62304 92 aaKnown RBP4.02□□□□□ -1.77
VPS29-205ENST00000548539 SIRPAP78324 504 aa4.02□□□□□ -1.77
VPS29-205ENST00000548539 RALGDSQ12967 914 aa4.02□□□□□ -1.77
VPS29-205ENST00000548539 HLFQ16534 295 aa4.02□□□□□ -1.77
VPS29-205ENST00000548539 ALDH1L2Q3SY69 923 aa4.02□□□□□ -1.77
VPS29-205ENST00000548539 CRY2Q49AN0 593 aa4.02□□□□□ -1.77
VPS29-205ENST00000548539 CBWD6Q4V339 395 aa4.02□□□□□ -1.77
VPS29-205ENST00000548539 CBWD3Q5JTY5 395 aa4.02□□□□□ -1.77
VPS29-205ENST00000548539 ZNF534Q76KX8 674 aa4.02□□□□□ -1.77
VPS29-205ENST00000548539 SLFN11Q7Z7L1 901 aa4.02□□□□□ -1.77
VPS29-205ENST00000548539 IQCHQ86VS3 1027 aa4.02□□□□□ -1.77
VPS29-205ENST00000548539 ODF3L1Q8IXM7 274 aa4.02□□□□□ -1.77
VPS29-205ENST00000548539 ZNF595Q8IYB9 648 aa4.02□□□□□ -1.77
VPS29-205ENST00000548539 SLC5A8Q8N695 610 aa4.02□□□□□ -1.77
VPS29-205ENST00000548539 SPATA22Q8NHS9 363 aa4.02□□□□□ -1.77
VPS29-205ENST00000548539 DNAAF4Q8WXU2 420 aa4.02□□□□□ -1.77
VPS29-205ENST00000548539 TANKQ92844 425 aa4.02□□□□□ -1.77
VPS29-205ENST00000548539 MIB2Q96AX9 1013 aa4.02□□□□□ -1.77
VPS29-205ENST00000548539 QRFPRQ96P65 431 aa4.02□□□□□ -1.77
VPS29-205ENST00000548539 OLFM1Q99784 485 aa4.02□□□□□ -1.77
VPS29-205ENST00000548539 TBC1D17Q9HA65 648 aa4.02□□□□□ -1.77
VPS29-205ENST00000548539 OLAHQ9NV23 265 aa4.02□□□□□ -1.77
VPS29-205ENST00000548539 TRMT1Q9NXH9 659 aaKnown RBP4.02□□□□□ -1.77
VPS29-205ENST00000548539 KLHL9Q9P2J3 617 aa4.02□□□□□ -1.77
VPS29-205ENST00000548539 PCDHA7Q9UN72 937 aa4.02□□□□□ -1.77
VPS29-205ENST00000548539 CCL27Q9Y4X3 112 aa4.02□□□□□ -1.77
VPS29-205ENST00000548539 TMEM184BQ9Y519 407 aaPredicted RBP4.02□□□□□ -1.77
VPS29-205ENST00000548539 PDS5AQ29RF7 1337 aaKnown RBP4.01□□□□□ -1.77
VPS29-205ENST00000548539 GOLGA6L9A6NEM1 432 aa4.01□□□□□ -1.77
VPS29-205ENST00000548539 PRAMEF11O60813 436 aa4.01□□□□□ -1.77
VPS29-205ENST00000548539 RFPL2O75678 378 aa4.01□□□□□ -1.77
VPS29-205ENST00000548539 GAS8-AS1O95177 125 aa4.01□□□□□ -1.77
VPS29-205ENST00000548539 GLUD1P00367 558 aa4.01□□□□□ -1.77
VPS29-205ENST00000548539 ACAA1P09110 424 aaPredicted RBP4.01□□□□□ -1.77
VPS29-205ENST00000548539 MYOD1P15172 320 aa4.01□□□□□ -1.77
VPS29-205ENST00000548539 ZNF12P17014 697 aa4.01□□□□□ -1.77
VPS29-205ENST00000548539 S1PR1P21453 382 aa4.01□□□□□ -1.77
VPS29-205ENST00000548539 NR2F2P24468 414 aa4.01□□□□□ -1.77
VPS29-205ENST00000548539 GLUD2P49448 558 aa4.01□□□□□ -1.77
VPS29-205ENST00000548539 PDLIM4P50479 330 aa4.01□□□□□ -1.77
VPS29-205ENST00000548539 ZNF41P51814 821 aaPredicted RBP4.01□□□□□ -1.77
VPS29-205ENST00000548539 PPARDQ03181 441 aa4.01□□□□□ -1.77
VPS29-205ENST00000548539 ZNF155Q12901 538 aaPredicted RBP4.01□□□□□ -1.77
VPS29-205ENST00000548539 NFATC4Q14934 902 aa4.01□□□□□ -1.77
VPS29-205ENST00000548539 CALCRLQ16602 461 aa4.01□□□□□ -1.77
VPS29-205ENST00000548539 SHQ1Q6PI26 577 aaKnown RBP4.01□□□□□ -1.77
VPS29-205ENST00000548539 FIGLAQ6QHK4 219 aa4.01□□□□□ -1.77
VPS29-205ENST00000548539 IL27RAQ6UWB1 636 aa4.01□□□□□ -1.77
VPS29-205ENST00000548539 DNAJB7Q7Z6W7 309 aaPredicted RBP4.01□□□□□ -1.77
VPS29-205ENST00000548539 TMEM173Q86WV6 379 aaPredicted RBP4.01□□□□□ -1.77
VPS29-205ENST00000548539 FBXL14Q8N1E6 418 aa4.01□□□□□ -1.77
VPS29-205ENST00000548539 CLIP4Q8N3C7 705 aa4.01□□□□□ -1.77
VPS29-205ENST00000548539 GCSAMQ8N6F7 178 aa4.01□□□□□ -1.77
VPS29-205ENST00000548539 FAM216AQ8WUB2 273 aa4.01□□□□□ -1.77
VPS29-205ENST00000548539 SLC20A1Q8WUM9 679 aa4.01□□□□□ -1.77
VPS29-205ENST00000548539 ERLEC1Q96DZ1 483 aa4.01□□□□□ -1.77
VPS29-205ENST00000548539 SIPA1Q96FS4 1042 aa4.01□□□□□ -1.77
VPS29-205ENST00000548539 PRMT6Q96LA8 375 aaPredicted RBP4.01□□□□□ -1.77
VPS29-205ENST00000548539 GPR88Q9GZN0 384 aa4.01□□□□□ -1.77
VPS29-205ENST00000548539 CNOT10Q9H9A5 744 aaKnown RBP4.01□□□□□ -1.77
VPS29-205ENST00000548539 ERVMER34-1Q9H9K5 563 aa4.01□□□□□ -1.77
VPS29-205ENST00000548539 ANAPC5Q9UJX4 755 aa4.01□□□□□ -1.77
VPS29-205ENST00000548539 AMDHD2Q9Y303 409 aa4.01□□□□□ -1.77
VPS29-205ENST00000548539 NFS1Q9Y697 457 aa4.01□□□□□ -1.77
VPS29-205ENST00000548539 EDDM13A0A1B0GTR0 161 aa4□□□□□ -1.77
VPS29-205ENST00000548539 A0A1W2PP11 408 aa4□□□□□ -1.77
VPS29-205ENST00000548539 GAGE7O76087 117 aa4□□□□□ -1.77
VPS29-205ENST00000548539 CCDC175P0C221 793 aa4□□□□□ -1.77
VPS29-205ENST00000548539 LINC00271P0C7V0 271 aa4□□□□□ -1.77
VPS29-205ENST00000548539 GAGE12FP0CL80 117 aa4□□□□□ -1.77
VPS29-205ENST00000548539 GAGE12GP0CL81 117 aa4□□□□□ -1.77
VPS29-205ENST00000548539 GAGE12IP0CL82 117 aa4□□□□□ -1.77
VPS29-205ENST00000548539 PFKFB1P16118 471 aa4□□□□□ -1.77
VPS29-205ENST00000548539 TERF1P54274 439 aa4□□□□□ -1.77
VPS29-205ENST00000548539 ROR1Q01973 937 aa4□□□□□ -1.77
VPS29-205ENST00000548539 SLC20A2Q08357 652 aa4□□□□□ -1.77
VPS29-205ENST00000548539 GAGE1Q13065 139 aa4□□□□□ -1.77
VPS29-205ENST00000548539 GAGE4Q13068 117 aa4□□□□□ -1.77
VPS29-205ENST00000548539 MELKQ14680 651 aa4□□□□□ -1.77
VPS29-205ENST00000548539 COG2Q14746 738 aa4□□□□□ -1.77
VPS29-205ENST00000548539 ZNF585BQ52M93 769 aa4□□□□□ -1.77
VPS29-205ENST00000548539 GSG1LQ6UXU4 331 aa4□□□□□ -1.77
VPS29-205ENST00000548539 RBPMS2Q6ZRY4 209 aaKnown RBP4□□□□□ -1.77
VPS29-205ENST00000548539 CHST3Q7LGC8 479 aa4□□□□□ -1.77
VPS29-205ENST00000548539 GALNTL5Q7Z4T8 443 aa4□□□□□ -1.77
VPS29-205ENST00000548539 CENPVQ7Z7K6 275 aaPredicted RBP4□□□□□ -1.77
VPS29-205ENST00000548539 TMPRSS12Q86WS5 348 aa4□□□□□ -1.77
VPS29-205ENST00000548539 C1orf52Q8N6N3 182 aaKnown RBP4□□□□□ -1.77
VPS29-205ENST00000548539 XXYLT1Q8NBI6 393 aa4□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms