RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 PTPRNQ16849 979 aa14.09□□□□□ -0.15
LIMS1-215ENST00000544547 HSF5Q4G112 596 aaPredicted RBP14.09□□□□□ -0.15
LIMS1-215ENST00000544547 CTXN3Q4LDR2 81 aa14.09□□□□□ -0.15
LIMS1-215ENST00000544547 GPR22Q99680 433 aa14.09□□□□□ -0.15
LIMS1-215ENST00000544547 NIFKQ9BYG3 293 aaKnown RBP14.09□□□□□ -0.15
LIMS1-215ENST00000544547 SEZ6LQ9BYH1 1024 aa14.09□□□□□ -0.15
LIMS1-215ENST00000544547 SPRTNQ9H040 489 aaPredicted RBP14.09□□□□□ -0.15
LIMS1-215ENST00000544547 WDR6Q9NNW5 1121 aaKnown RBP14.09□□□□□ -0.15
LIMS1-215ENST00000544547 ITM2BQ9Y287 266 aa14.09□□□□□ -0.15
LIMS1-215ENST00000544547 KRT20P35900 424 aa14.09□□□□□ -0.15
LIMS1-215ENST00000544547 ADCYAP1R1P41586 468 aa14.09□□□□□ -0.15
LIMS1-215ENST00000544547 UFM1P61960 85 aa14.09□□□□□ -0.15
LIMS1-215ENST00000544547 SPCS2Q15005 226 aa14.09□□□□□ -0.15
LIMS1-215ENST00000544547 C15orf39Q6ZRI6 1047 aa14.09□□□□□ -0.15
LIMS1-215ENST00000544547 FAM45AQ8TCE6 357 aa14.09□□□□□ -0.15
LIMS1-215ENST00000544547 ASZ1Q8WWH4 475 aa14.09□□□□□ -0.15
LIMS1-215ENST00000544547 GBA3Q9H227 469 aa14.09□□□□□ -0.15
LIMS1-215ENST00000544547 PCDHGA10Q9Y5H3 936 aa14.09□□□□□ -0.15
LIMS1-215ENST00000544547 OR51F1A6NGY5 319 aa14.09□□□□□ -0.15
LIMS1-215ENST00000544547 UGT2B11O75310 529 aa14.09□□□□□ -0.15
LIMS1-215ENST00000544547 LRG1P02750 347 aa14.09□□□□□ -0.15
LIMS1-215ENST00000544547 LGALS2P05162 132 aa14.09□□□□□ -0.15
LIMS1-215ENST00000544547 BDNFP23560 247 aa14.09□□□□□ -0.15
LIMS1-215ENST00000544547 RENBPP51606 427 aa14.09□□□□□ -0.15
LIMS1-215ENST00000544547 VGLL4Q14135 290 aa14.09□□□□□ -0.15
LIMS1-215ENST00000544547 CYP4V2Q6ZWL3 525 aaPredicted RBP14.09□□□□□ -0.15
LIMS1-215ENST00000544547 DEPDC4Q8N2C3 294 aa14.09□□□□□ -0.15
LIMS1-215ENST00000544547 MRPS31Q92665 395 aaKnown RBP14.09□□□□□ -0.15
LIMS1-215ENST00000544547 TBATAQ96M53 351 aa14.09□□□□□ -0.15
LIMS1-215ENST00000544547 CEP295NLQ96MC4 621 aa14.09□□□□□ -0.15
LIMS1-215ENST00000544547 GBA2Q9HCG7 927 aaPredicted RBP14.09□□□□□ -0.15
LIMS1-215ENST00000544547 ERVK-18Q9QC07 812 aa14.09□□□□□ -0.15
LIMS1-215ENST00000544547 DNAJB9Q9UBS3 223 aa14.09□□□□□ -0.15
LIMS1-215ENST00000544547 CORINQ9Y5Q5 1042 aa14.09□□□□□ -0.15
LIMS1-215ENST00000544547 ECM29Q5VYK3 1845 aa14.08□□□□□ -0.15
LIMS1-215ENST00000544547 TULP3O75386 442 aa14.08□□□□□ -0.15
LIMS1-215ENST00000544547 TBRG1Q3YBR2 411 aa14.08□□□□□ -0.15
LIMS1-215ENST00000544547 NOMO2Q5JPE7 1267 aa14.08□□□□□ -0.15
LIMS1-215ENST00000544547 TMPRSS11AQ6ZMR5 421 aa14.08□□□□□ -0.15
LIMS1-215ENST00000544547 STRADAQ7RTN6 431 aa14.08□□□□□ -0.15
LIMS1-215ENST00000544547 MMAAQ8IVH4 418 aaKnown RBP14.08□□□□□ -0.15
LIMS1-215ENST00000544547 CADM3Q8N126 398 aa14.08□□□□□ -0.15
LIMS1-215ENST00000544547 OR52J3Q8NH60 311 aa14.08□□□□□ -0.15
LIMS1-215ENST00000544547 LGALS12Q96DT0 336 aa14.08□□□□□ -0.15
LIMS1-215ENST00000544547 DIRAS2Q96HU8 199 aa14.08□□□□□ -0.15
LIMS1-215ENST00000544547 LRRC3Q9BY71 257 aa14.08□□□□□ -0.15
LIMS1-215ENST00000544547 ING3Q9NXR8 418 aa14.08□□□□□ -0.15
LIMS1-215ENST00000544547 MPP6Q9NZW5 540 aa14.08□□□□□ -0.15
LIMS1-215ENST00000544547 MALT1Q9UDY8 824 aa14.08□□□□□ -0.15
LIMS1-215ENST00000544547 PEX16Q9Y5Y5 336 aa14.08□□□□□ -0.15
LIMS1-215ENST00000544547 DYRK3O43781 588 aa14.08□□□□□ -0.16
LIMS1-215ENST00000544547 SERPINA1P01009 418 aa14.08□□□□□ -0.16
LIMS1-215ENST00000544547 COL6A1P12109 1028 aa14.08□□□□□ -0.16
LIMS1-215ENST00000544547 EPB42P16452 691 aa14.08□□□□□ -0.16
LIMS1-215ENST00000544547 RFC2P35250 354 aa14.08□□□□□ -0.16
LIMS1-215ENST00000544547 C1QTNF8P60827 252 aa14.08□□□□□ -0.16
LIMS1-215ENST00000544547 SREBF2Q12772 1141 aa14.08□□□□□ -0.16
LIMS1-215ENST00000544547 GRIK4Q16099 956 aa14.08□□□□□ -0.16
LIMS1-215ENST00000544547 KLHL12Q53G59 568 aa14.08□□□□□ -0.16
LIMS1-215ENST00000544547 ZNF517Q6ZMY9 492 aaPredicted RBP14.08□□□□□ -0.16
LIMS1-215ENST00000544547 TP53INP2Q8IXH6 220 aa14.08□□□□□ -0.16
LIMS1-215ENST00000544547 CDK5RAP1Q96SZ6 601 aaKnown RBP14.08□□□□□ -0.16
LIMS1-215ENST00000544547 PHOX2BQ99453 314 aa14.08□□□□□ -0.16
LIMS1-215ENST00000544547 TUBA1CQ9BQE3 449 aa14.08□□□□□ -0.16
LIMS1-215ENST00000544547 NMRK2Q9NPI5 230 aa14.08□□□□□ -0.16
LIMS1-215ENST00000544547 INIPQ9NRY2 104 aa14.08□□□□□ -0.16
LIMS1-215ENST00000544547 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP14.08□□□□□ -0.169e-7■■■□□ 16.9
LIMS1-215ENST00000544547 PRR23AA6NEV1 266 aa14.08□□□□□ -0.16
LIMS1-215ENST00000544547 OR4F21O95013 312 aa14.08□□□□□ -0.16
LIMS1-215ENST00000544547 RPS3AP61247 264 aaKnown RBP14.08□□□□□ -0.16
LIMS1-215ENST00000544547 TIGD6Q17RP2 521 aa14.08□□□□□ -0.16
LIMS1-215ENST00000544547 FAM214AQ32MH5 1076 aa14.08□□□□□ -0.16
LIMS1-215ENST00000544547 SLC10A6Q3KNW5 377 aa14.08□□□□□ -0.16
LIMS1-215ENST00000544547 MOB2Q70IA6 237 aa14.08□□□□□ -0.16
LIMS1-215ENST00000544547 NDNFQ8TB73 568 aa14.08□□□□□ -0.16
LIMS1-215ENST00000544547 TSSK3Q96PN8 268 aa14.08□□□□□ -0.16
LIMS1-215ENST00000544547 GPR20Q99678 358 aa14.08□□□□□ -0.16
LIMS1-215ENST00000544547 GLOD4Q9HC38 313 aa14.08□□□□□ -0.16
LIMS1-215ENST00000544547 PAK1IP1Q9NWT1 392 aaPredicted RBP14.08□□□□□ -0.16
LIMS1-215ENST00000544547 SH3BP4Q9P0V3 963 aa14.08□□□□□ -0.16
LIMS1-215ENST00000544547 ZNF624Q9P2J8 865 aaPredicted RBP14.08□□□□□ -0.16
LIMS1-215ENST00000544547 SLC9A8Q9Y2E8 581 aa14.08□□□□□ -0.16
LIMS1-215ENST00000544547 HCRTO43612 131 aa14.07□□□□□ -0.16
LIMS1-215ENST00000544547 AGXTP21549 392 aa14.07□□□□□ -0.16
LIMS1-215ENST00000544547 MZF1P28698 734 aaPredicted RBP14.07□□□□□ -0.16
LIMS1-215ENST00000544547 LHX1P48742 406 aa14.07□□□□□ -0.16
LIMS1-215ENST00000544547 EMP3P54852 163 aa14.07□□□□□ -0.16
LIMS1-215ENST00000544547 NIPAL4Q0D2K0 466 aa14.07□□□□□ -0.16
LIMS1-215ENST00000544547 GRB7Q14451 532 aa14.07□□□□□ -0.16
LIMS1-215ENST00000544547 ACAP2Q15057 778 aa14.07□□□□□ -0.16
LIMS1-215ENST00000544547 PIM3Q86V86 326 aa14.07□□□□□ -0.16
LIMS1-215ENST00000544547 BBS7Q8IWZ6 715 aa14.07□□□□□ -0.16
LIMS1-215ENST00000544547 KDM1BQ8NB78 822 aa14.07□□□□□ -0.16
LIMS1-215ENST00000544547 ZUFSPQ96AP4 578 aa14.07□□□□□ -0.16
LIMS1-215ENST00000544547 DHRS1Q96LJ7 313 aa14.07□□□□□ -0.16
LIMS1-215ENST00000544547 CDK15Q96Q40 435 aa14.07□□□□□ -0.16
LIMS1-215ENST00000544547 CNPPD1Q9BV87 410 aa14.07□□□□□ -0.16
LIMS1-215ENST00000544547 EIF2B3Q9NR50 452 aaKnown RBP14.07□□□□□ -0.16
LIMS1-215ENST00000544547 CATSPERZQ9NTU4 200 aa14.07□□□□□ -0.16
LIMS1-215ENST00000544547 TRPM5Q9NZQ8 1165 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms