RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 EPG5Q9HCE0 2579 aa14.77□□□□□ -0.04
CPSF1-208ENST00000532560 CHD8Q9HCK8 2581 aa14.77□□□□□ -0.04
CPSF1-208ENST00000532560 MGAT4DA6NG13 374 aa14.77□□□□□ -0.05
CPSF1-208ENST00000532560 PDZK1P1A8MUH7 402 aa14.77□□□□□ -0.05
CPSF1-208ENST00000532560 AP2A2O94973 939 aa14.77□□□□□ -0.05
CPSF1-208ENST00000532560 GOT2P00505 430 aaKnown RBP14.77□□□□□ -0.05
CPSF1-208ENST00000532560 PROS1P07225 676 aa14.77□□□□□ -0.05
CPSF1-208ENST00000532560 BRAFP15056 766 aa14.77□□□□□ -0.05
CPSF1-208ENST00000532560 XRCC1P18887 633 aaPredicted RBP14.77□□□□□ -0.05
CPSF1-208ENST00000532560 CASQ1P31415 396 aa14.77□□□□□ -0.05
CPSF1-208ENST00000532560 PTGIRP43119 386 aa14.77□□□□□ -0.05
CPSF1-208ENST00000532560 UBE2IP63279 158 aaKnown RBP14.77□□□□□ -0.05
CPSF1-208ENST00000532560 PRAMEP78395 509 aa14.77□□□□□ -0.05
CPSF1-208ENST00000532560 LYPLAL1Q5VWZ2 237 aa14.77□□□□□ -0.05
CPSF1-208ENST00000532560 FAM83HQ6ZRV2 1179 aaPredicted RBP14.77□□□□□ -0.05
CPSF1-208ENST00000532560 SYDE1Q6ZW31 735 aaPredicted RBP14.77□□□□□ -0.05
CPSF1-208ENST00000532560 CAND1Q86VP6 1230 aaKnown RBP14.77□□□□□ -0.05
CPSF1-208ENST00000532560 BEND7Q8N7W2 519 aaPredicted RBP14.77□□□□□ -0.05
CPSF1-208ENST00000532560 NAT8LQ8N9F0 302 aa14.77□□□□□ -0.05
CPSF1-208ENST00000532560 OR2L2Q8NH16 312 aa14.77□□□□□ -0.05
CPSF1-208ENST00000532560 OR4L1Q8NH43 312 aa14.77□□□□□ -0.05
CPSF1-208ENST00000532560 SH3KBP1Q96B97 665 aa14.77□□□□□ -0.05
CPSF1-208ENST00000532560 SERPINB12Q96P63 405 aa14.77□□□□□ -0.05
CPSF1-208ENST00000532560 SCHIP1Q9P0W5 487 aaPredicted RBP14.77□□□□□ -0.05
CPSF1-208ENST00000532560 CPNE7Q9UBL6 633 aa14.77□□□□□ -0.05
CPSF1-208ENST00000532560 DKK4Q9UBT3 224 aa14.77□□□□□ -0.05
CPSF1-208ENST00000532560 SOX13Q9UN79 622 aa14.77□□□□□ -0.05
CPSF1-208ENST00000532560 PCDHB1Q9Y5F3 818 aa14.77□□□□□ -0.05
CPSF1-208ENST00000532560 TPRP12270 2363 aaKnown RBP14.77□□□□□ -0.05
CPSF1-208ENST00000532560 AKAP13Q12802 2813 aa14.76□□□□□ -0.05
CPSF1-208ENST00000532560 TRBV23OR9-2A0A075B6M9 112 aa14.76□□□□□ -0.05
CPSF1-208ENST00000532560 TRABD2BA6NFA1 517 aa14.76□□□□□ -0.05
CPSF1-208ENST00000532560 LILRA5A6NI73 299 aa14.76□□□□□ -0.05
CPSF1-208ENST00000532560 QSOX1O00391 747 aa14.76□□□□□ -0.05
CPSF1-208ENST00000532560 B4GAT1O43505 415 aa14.76□□□□□ -0.05
CPSF1-208ENST00000532560 CAPNS1P04632 268 aa14.76□□□□□ -0.05
CPSF1-208ENST00000532560 ALDH4A1P30038 563 aa14.76□□□□□ -0.05
CPSF1-208ENST00000532560 PBLDP30039 288 aaPredicted RBP14.76□□□□□ -0.05
CPSF1-208ENST00000532560 NSG1P42857 185 aa14.76□□□□□ -0.05
CPSF1-208ENST00000532560 MAGEA3P43357 314 aa14.76□□□□□ -0.05
CPSF1-208ENST00000532560 OR1D5P58170 312 aa14.76□□□□□ -0.05
CPSF1-208ENST00000532560 GPLD1P80108 840 aa14.76□□□□□ -0.05
CPSF1-208ENST00000532560 NFE2L1Q14494 772 aa14.76□□□□□ -0.05
CPSF1-208ENST00000532560 RTP5Q14D33 572 aa14.76□□□□□ -0.05
CPSF1-208ENST00000532560 SEPT7Q16181 437 aaKnown RBP14.76□□□□□ -0.05
CPSF1-208ENST00000532560 AARS2Q5JTZ9 985 aaKnown RBP14.76□□□□□ -0.05
CPSF1-208ENST00000532560 RNASEH2BQ5TBB1 312 aaKnown RBP14.76□□□□□ -0.05
CPSF1-208ENST00000532560 CERS6Q6ZMG9 384 aa14.76□□□□□ -0.05
CPSF1-208ENST00000532560 KLHL7Q8IXQ5 586 aa14.76□□□□□ -0.05
CPSF1-208ENST00000532560 PPIL6Q8IXY8 311 aa14.76□□□□□ -0.05
CPSF1-208ENST00000532560 KDF1Q8NAX2 398 aaPredicted RBP14.76□□□□□ -0.05
CPSF1-208ENST00000532560 OR6P1Q8NGX9 317 aa14.76□□□□□ -0.05
CPSF1-208ENST00000532560 HM13Q8TCT9 377 aa14.76□□□□□ -0.05
CPSF1-208ENST00000532560 NAT14Q8WUY8 206 aa14.76□□□□□ -0.05
CPSF1-208ENST00000532560 TTC1Q99614 292 aa14.76□□□□□ -0.05
CPSF1-208ENST00000532560 SLC38A3Q99624 504 aa14.76□□□□□ -0.05
CPSF1-208ENST00000532560 LDHAL6BQ9BYZ2 381 aaPredicted RBP14.76□□□□□ -0.05
CPSF1-208ENST00000532560 VPS37BQ9H9H4 285 aa14.76□□□□□ -0.05
CPSF1-208ENST00000532560 UCK1Q9HA47 277 aa14.76□□□□□ -0.05
CPSF1-208ENST00000532560 POT1Q9NUX5 634 aa14.76□□□□□ -0.05
CPSF1-208ENST00000532560 KCNK4Q9NYG8 393 aa14.76□□□□□ -0.05
CPSF1-208ENST00000532560 OGFRQ9NZT2 677 aa14.76□□□□□ -0.05
CPSF1-208ENST00000532560 ASIC3Q9UHC3 531 aa14.76□□□□□ -0.05
CPSF1-208ENST00000532560 ENTPD2Q9Y5L3 495 aa14.76□□□□□ -0.05
CPSF1-208ENST00000532560 IGHV1OR21-1A0A087WYE8 117 aa14.75□□□□□ -0.05
CPSF1-208ENST00000532560 C17orf113A0A1B0GUU1 675 aa14.75□□□□□ -0.05
CPSF1-208ENST00000532560 TMX2-CTNND1H3BSU7 103 aa14.75□□□□□ -0.05
CPSF1-208ENST00000532560 DNALI1O14645 258 aaPredicted RBP14.75□□□□□ -0.05
CPSF1-208ENST00000532560 AVILO75366 819 aa14.75□□□□□ -0.05
CPSF1-208ENST00000532560 CPNE6O95741 557 aa14.75□□□□□ -0.05
CPSF1-208ENST00000532560 GSTM1P09488 218 aa14.75□□□□□ -0.05
CPSF1-208ENST00000532560 RPL10P27635 214 aaKnown RBP14.75□□□□□ -0.05
CPSF1-208ENST00000532560 NMBRP28336 390 aa14.75□□□□□ -0.05
CPSF1-208ENST00000532560 CCKBRP32239 447 aa14.75□□□□□ -0.05
CPSF1-208ENST00000532560 HALP42357 657 aa14.75□□□□□ -0.05
CPSF1-208ENST00000532560 EPHA4P54764 986 aa14.75□□□□□ -0.05
CPSF1-208ENST00000532560 DRG2P55039 364 aaKnown RBP14.75□□□□□ -0.05
CPSF1-208ENST00000532560 DR1Q01658 176 aa14.75□□□□□ -0.05
CPSF1-208ENST00000532560 GSTM4Q03013 218 aa14.75□□□□□ -0.05
CPSF1-208ENST00000532560 SQSTM1Q13501 440 aa14.75□□□□□ -0.05
CPSF1-208ENST00000532560 MAP9Q49MG5 647 aa14.75□□□□□ -0.05
CPSF1-208ENST00000532560 ZNF658BQ4V348 819 aaPredicted RBP14.75□□□□□ -0.05
CPSF1-208ENST00000532560 FASTKD1Q53R41 847 aaKnown RBP14.75□□□□□ -0.05
CPSF1-208ENST00000532560 METRNLQ641Q3 311 aa14.75□□□□□ -0.05
CPSF1-208ENST00000532560 XKR5Q6UX68 686 aa14.75□□□□□ -0.05
CPSF1-208ENST00000532560 HOOK3Q86VS8 718 aa14.75□□□□□ -0.05
CPSF1-208ENST00000532560 JAMLQ86YT9 394 aa14.75□□□□□ -0.05
CPSF1-208ENST00000532560 TRIM48Q8IWZ4 208 aa14.75□□□□□ -0.05
CPSF1-208ENST00000532560 RBM12BQ8IXT5 1001 aaKnown RBP14.75□□□□□ -0.05
CPSF1-208ENST00000532560 MFSD3Q96ES6 412 aa14.75□□□□□ -0.05
CPSF1-208ENST00000532560 ATXN7L3BQ96GX2 97 aa14.75□□□□□ -0.05
CPSF1-208ENST00000532560 LIN37Q96GY3 246 aaPredicted RBP14.75□□□□□ -0.05
CPSF1-208ENST00000532560 TMEM74Q96NL1 305 aa14.75□□□□□ -0.05
CPSF1-208ENST00000532560 CATSPERZQ9NTU4 200 aa14.75□□□□□ -0.05
CPSF1-208ENST00000532560 SAMD15Q9P1V8 674 aa14.75□□□□□ -0.05
CPSF1-208ENST00000532560 ZNF624Q9P2J8 865 aaPredicted RBP14.75□□□□□ -0.05
CPSF1-208ENST00000532560 ACSL5Q9ULC5 683 aa14.75□□□□□ -0.05
CPSF1-208ENST00000532560 ATXN7L1Q9ULK2 861 aaPredicted RBP14.75□□□□□ -0.05
CPSF1-208ENST00000532560 WDR37Q9Y2I8 494 aa14.75□□□□□ -0.05
CPSF1-208ENST00000532560 CACNA1BQ00975 2339 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms