RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 DENND2DQ9H6A0 471 aaPredicted RBP20.41■□□□□ 0.86
VPS28-209ENST00000528142 SEMA4BQ9NPR2 832 aaPredicted RBP20.41■□□□□ 0.86
VPS28-209ENST00000528142 KCTD5Q9NXV2 234 aa20.41■□□□□ 0.86
VPS28-209ENST00000528142 UTP6Q9NYH9 597 aaKnown RBP20.41■□□□□ 0.86
VPS28-209ENST00000528142 TSR3Q9UJK0 312 aaKnown RBP20.41■□□□□ 0.86
VPS28-209ENST00000528142 COPG1Q9Y678 874 aaKnown RBP20.41■□□□□ 0.86
VPS28-209ENST00000528142 TRIOBPQ9H2D6 2365 aa20.4■□□□□ 0.86
VPS28-209ENST00000528142 MEI4A8MW99 385 aa20.4■□□□□ 0.86
VPS28-209ENST00000528142 KPNA3O00505 521 aaPredicted RBP20.4■□□□□ 0.86
VPS28-209ENST00000528142 E2F3O00716 465 aa20.4■□□□□ 0.86
VPS28-209ENST00000528142 GM2AP17900 193 aa20.4■□□□□ 0.86
VPS28-209ENST00000528142 CCR7P32248 378 aa20.4■□□□□ 0.86
VPS28-209ENST00000528142 METAP1P53582 386 aa20.4■□□□□ 0.86
VPS28-209ENST00000528142 GRM2Q14416 872 aa20.4■□□□□ 0.86
VPS28-209ENST00000528142 TTLL9Q3SXZ7 439 aa20.4■□□□□ 0.86
VPS28-209ENST00000528142 WASHC2DQ5SRD0 308 aa20.4■□□□□ 0.86
VPS28-209ENST00000528142 ESAMQ96AP7 390 aa20.4■□□□□ 0.86
VPS28-209ENST00000528142 FAM129BQ96TA1 746 aa20.4■□□□□ 0.86
VPS28-209ENST00000528142 ADAMTS6Q9UKP5 1117 aa20.4■□□□□ 0.86
VPS28-209ENST00000528142 OARD1Q9Y530 152 aa20.4■□□□□ 0.86
VPS28-209ENST00000528142 KIF26AQ9ULI4 1882 aaPredicted RBP20.39■□□□□ 0.86
VPS28-209ENST00000528142 SPINT1O43278 529 aa20.39■□□□□ 0.86
VPS28-209ENST00000528142 OR56A5P0C7T3 313 aa20.39■□□□□ 0.86
VPS28-209ENST00000528142 CBSLP0DN79 551 aa20.39■□□□□ 0.86
VPS28-209ENST00000528142 GJA4P35212 333 aa20.39■□□□□ 0.86
VPS28-209ENST00000528142 CBSP35520 551 aa20.39■□□□□ 0.86
VPS28-209ENST00000528142 RAP1GDS1P52306 607 aa20.39■□□□□ 0.86
VPS28-209ENST00000528142 DLX2Q07687 328 aaPredicted RBP20.39■□□□□ 0.86
VPS28-209ENST00000528142 ADGRE1Q14246 886 aa20.39■□□□□ 0.86
VPS28-209ENST00000528142 GRIN2CQ14957 1233 aa20.39■□□□□ 0.86
VPS28-209ENST00000528142 PCBP2Q15366 365 aaKnown RBP eCLIP20.39■□□□□ 0.86
VPS28-209ENST00000528142 ERAP2Q6P179 960 aa20.39■□□□□ 0.86
VPS28-209ENST00000528142 FRA10AC1Q70Z53 315 aa20.39■□□□□ 0.86
VPS28-209ENST00000528142 LARP4Q71RC2 724 aaKnown RBP eCLIP20.39■□□□□ 0.86
VPS28-209ENST00000528142 SUGP1Q8IWZ8 645 aaKnown RBP20.39■□□□□ 0.86
VPS28-209ENST00000528142 PDPRQ8NCN5 879 aa20.39■□□□□ 0.86
VPS28-209ENST00000528142 OR8D1Q8WZ84 308 aa20.39■□□□□ 0.86
VPS28-209ENST00000528142 ARRDC3Q96B67 414 aa20.39■□□□□ 0.86
VPS28-209ENST00000528142 C19orf60Q96EN9 201 aa20.39■□□□□ 0.86
VPS28-209ENST00000528142 CHFRQ96EP1 664 aa20.39■□□□□ 0.86
VPS28-209ENST00000528142 MARK4Q96L34 752 aa20.39■□□□□ 0.86
VPS28-209ENST00000528142 C3orf30Q96M34 536 aa20.39■□□□□ 0.86
VPS28-209ENST00000528142 RIOK2Q9BVS4 552 aaKnown RBP20.39■□□□□ 0.86
VPS28-209ENST00000528142 FAM126AQ9BYI3 521 aaPredicted RBP20.39■□□□□ 0.86
VPS28-209ENST00000528142 CLEC1BQ9P126 229 aa20.39■□□□□ 0.86
VPS28-209ENST00000528142 SUN2Q9UH99 717 aa20.39■□□□□ 0.86
VPS28-209ENST00000528142 ZNF225Q9UK10 706 aa20.39■□□□□ 0.86
VPS28-209ENST00000528142 COLQQ9Y215 455 aaPredicted RBP20.39■□□□□ 0.86
VPS28-209ENST00000528142 MUC22E2RYF6 1773 aaPredicted RBP20.39■□□□□ 0.85
VPS28-209ENST00000528142 COL4A3Q01955 1670 aa20.39■□□□□ 0.85
VPS28-209ENST00000528142 FFAR2O15552 330 aa20.39■□□□□ 0.85
VPS28-209ENST00000528142 MLYCDO95822 493 aa20.39■□□□□ 0.85
VPS28-209ENST00000528142 THRAP10827 490 aa20.39■□□□□ 0.85
VPS28-209ENST00000528142 ATP1B2P14415 290 aaPredicted RBP20.39■□□□□ 0.85
VPS28-209ENST00000528142 ITGB7P26010 798 aa20.39■□□□□ 0.85
VPS28-209ENST00000528142 AOAHP28039 575 aa20.39■□□□□ 0.85
VPS28-209ENST00000528142 MXRA7P84157 204 aa20.39■□□□□ 0.85
VPS28-209ENST00000528142 SLC25A3Q00325 362 aa20.39■□□□□ 0.85
VPS28-209ENST00000528142 ADAM15Q13444 863 aa20.39■□□□□ 0.85
VPS28-209ENST00000528142 GBX1Q14549 363 aa20.39■□□□□ 0.85
VPS28-209ENST00000528142 ELAVL3Q14576 367 aaKnown RBP20.39■□□□□ 0.85
VPS28-209ENST00000528142 LRIT3Q3SXY7 679 aa20.39■□□□□ 0.85
VPS28-209ENST00000528142 ATAT1Q5SQI0 421 aa20.39■□□□□ 0.85
VPS28-209ENST00000528142 SYVN1Q86TM6 617 aa20.39■□□□□ 0.85
VPS28-209ENST00000528142 ARHGAP24Q8N264 748 aa20.39■□□□□ 0.85
VPS28-209ENST00000528142 RP9Q8TA86 221 aaKnown RBP20.39■□□□□ 0.85
VPS28-209ENST00000528142 PIP4K2CQ8TBX8 421 aa20.39■□□□□ 0.85
VPS28-209ENST00000528142 DLG3Q92796 817 aa20.39■□□□□ 0.85
VPS28-209ENST00000528142 KCNA7Q96RP8 456 aa20.39■□□□□ 0.85
VPS28-209ENST00000528142 HGH1Q9BTY7 390 aa20.39■□□□□ 0.85
VPS28-209ENST00000528142 S1PR5Q9H228 398 aa20.39■□□□□ 0.85
VPS28-209ENST00000528142 TUBB1Q9H4B7 451 aa20.39■□□□□ 0.85
VPS28-209ENST00000528142 EIF2B4Q9UI10 523 aaKnown RBP20.39■□□□□ 0.85
VPS28-209ENST00000528142 PTBP2Q9UKA9 531 aaKnown RBP20.39■□□□□ 0.85
VPS28-209ENST00000528142 HCN2Q9UL51 889 aa20.39■□□□□ 0.85
VPS28-209ENST00000528142 ITM2BQ9Y287 266 aa20.39■□□□□ 0.85
VPS28-209ENST00000528142 PLXNB3Q9ULL4 1909 aa20.38■□□□□ 0.85
VPS28-209ENST00000528142 XIRP2A4UGR9 3374 aa20.38■□□□□ 0.85
VPS28-209ENST00000528142 TBC1D3BA6NDS4 549 aa20.38■□□□□ 0.85
VPS28-209ENST00000528142 FADS2P1A8MWK0 482 aa20.38■□□□□ 0.85
VPS28-209ENST00000528142 RAD51BO15315 384 aa20.38■□□□□ 0.85
VPS28-209ENST00000528142 TM7SF2O76062 418 aa20.38■□□□□ 0.85
VPS28-209ENST00000528142 ESRRBO95718 433 aa20.38■□□□□ 0.85
VPS28-209ENST00000528142 HERC3Q15034 1050 aa20.38■□□□□ 0.85
VPS28-209ENST00000528142 PHKG1Q16816 387 aa20.38■□□□□ 0.85
VPS28-209ENST00000528142 DDHD1Q8NEL9 900 aa20.38■□□□□ 0.85
VPS28-209ENST00000528142 OR56A4Q8NGH8 313 aa20.38■□□□□ 0.85
VPS28-209ENST00000528142 TWIST2Q8WVJ9 160 aa20.38■□□□□ 0.85
VPS28-209ENST00000528142 RTKNQ9BST9 563 aa20.38■□□□□ 0.85
VPS28-209ENST00000528142 ZSCAN5AQ9BUG6 496 aa20.38■□□□□ 0.85
VPS28-209ENST00000528142 TNPO3Q9Y5L0 923 aaKnown RBP20.38■□□□□ 0.85
VPS28-209ENST00000528142 SEC23IPQ9Y6Y8 1000 aaKnown RBP20.38■□□□□ 0.85
VPS28-209ENST00000528142 PSMD11O00231 422 aa20.37■□□□□ 0.85
VPS28-209ENST00000528142 EIF3FO00303 357 aaPredicted RBP20.37■□□□□ 0.85
VPS28-209ENST00000528142 SOX1O00570 391 aaPredicted RBP20.37■□□□□ 0.85
VPS28-209ENST00000528142 SGTAO43765 313 aa20.37■□□□□ 0.85
VPS28-209ENST00000528142 ELFN1P0C7U0 828 aa20.37■□□□□ 0.85
VPS28-209ENST00000528142 PSMC3P17980 439 aa20.37■□□□□ 0.85
VPS28-209ENST00000528142 PRDX3P30048 256 aaKnown RBP20.37■□□□□ 0.85
VPS28-209ENST00000528142 C18orf21Q32NC0 220 aaPredicted RBP20.37■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms