RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 SPARCL1Q14515 664 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 MORF4L2Q15014 288 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 SKIDA1Q1XH10 827 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 PPM1LQ5SGD2 360 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 ANKRD20A2Q5SQ80 823 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 FNBP1LQ5T0N5 605 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 ANKRD20A1Q5TYW2 823 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 ANKRD20A3Q5VUR7 823 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 SNX30Q5VWJ9 437 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 NUGGCQ68CJ6 796 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 IRGCQ6NXR0 463 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 PAQR3Q6TCH7 311 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 TEPPQ6URK8 271 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 LRRC31Q6UY01 552 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 BZW1Q7L1Q6 419 aaKnown RBP4.19□□□□□ -1.74
CD44-226ENST00000527889 TADA2BQ86TJ2 420 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 RBM23Q86U06 439 aaKnown RBP4.19□□□□□ -1.74
CD44-226ENST00000527889 NLRP14Q86W24 1093 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 CCDC13Q8IYE1 715 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 ZNF567Q8N184 647 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 CFAP52Q8N1V2 620 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 ELMOD1Q8N336 334 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 ZNF276Q8N554 614 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 ZCCHC9Q8N567 271 aaKnown RBP4.19□□□□□ -1.74
CD44-226ENST00000527889 SH2D3CQ8N5H7 860 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 ATPAF2Q8N5M1 289 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP4.19□□□□□ -1.74
CD44-226ENST00000527889 C12orf76Q8N812 135 aaPredicted RBP4.19□□□□□ -1.74
CD44-226ENST00000527889 RTL3Q8N8U3 475 aaKnown RBP4.19□□□□□ -1.74
CD44-226ENST00000527889 MAB21L3Q8N8X9 362 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 NAT8LQ8N9F0 302 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 BBOF1Q8ND07 529 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 PPP1R14CQ8TAE6 165 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 CCHCR1Q8TD31 782 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 HTR3CQ8WXA8 447 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 ARNTL2Q8WYA1 636 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP4.19□□□□□ -1.74
CD44-226ENST00000527889 MRPS31Q92665 395 aaKnown RBP4.19□□□□□ -1.74
CD44-226ENST00000527889 HMCESQ96FZ2 354 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 TOE1Q96GM8 510 aaKnown RBP4.19□□□□□ -1.74
CD44-226ENST00000527889 MRGPRX1Q96LB2 322 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 C1orf74Q96LT6 269 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 PPM1MQ96MI6 270 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 SPATA13Q96N96 652 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 RPRD1AQ96P16 312 aaPredicted RBP4.19□□□□□ -1.74
CD44-226ENST00000527889 GCNAQ96QF7 691 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 CDK5RAP1Q96SZ6 601 aaKnown RBP4.19□□□□□ -1.74
CD44-226ENST00000527889 RBM15Q96T37 977 aaKnown RBP eCLIP4.19□□□□□ -1.74
CD44-226ENST00000527889 RUFY1Q96T51 708 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 CENPOQ9BU64 300 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 BTBD2Q9BX70 525 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 TMEM120AQ9BXJ8 343 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 FAM129AQ9BZQ8 928 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 ZYG11BQ9C0D3 744 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 SLC39A8Q9C0K1 460 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 OR10A5Q9H207 317 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 CDC42EP4Q9H3Q1 356 aaKnown RBP4.19□□□□□ -1.74
CD44-226ENST00000527889 VIPAS39Q9H9C1 493 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 ASAH2Q9NR71 780 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 TDP1Q9NUW8 608 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 PIH1D1Q9NWS0 290 aaKnown RBP4.19□□□□□ -1.74
CD44-226ENST00000527889 IRAK4Q9NWZ3 460 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 FAM53CQ9NYF3 392 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 NINJ2Q9NZG7 142 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 PAK5Q9P286 719 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 PDP2Q9P2J9 529 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 CPNE7Q9UBL6 633 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 GRHPRQ9UBQ7 328 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 ZMAT5Q9UDW3 170 aaKnown RBP4.19□□□□□ -1.74
CD44-226ENST00000527889 STK39Q9UEW8 545 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 SHOC2Q9UQ13 582 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 ASB3Q9Y575 518 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 IRAK3Q9Y616 596 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 CPQQ9Y646 472 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 DYNC1LI1Q9Y6G9 523 aaKnown RBP4.19□□□□□ -1.74
CD44-226ENST00000527889 DMDP11532 3685 aa4.18□□□□□ -1.74
CD44-226ENST00000527889 IGLV3-10A0A075B6K4 115 aa4.18□□□□□ -1.74
CD44-226ENST00000527889 TRAV19A0A0A6YYK7 116 aa4.18□□□□□ -1.74
CD44-226ENST00000527889 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP4.18□□□□□ -1.74
CD44-226ENST00000527889 A0A1W2PR48 441 aa4.18□□□□□ -1.74
CD44-226ENST00000527889 H0YC42 278 aa4.18□□□□□ -1.74
CD44-226ENST00000527889 H3BNC9 293 aa4.18□□□□□ -1.74
CD44-226ENST00000527889 J3KR12 359 aa4.18□□□□□ -1.74
CD44-226ENST00000527889 J3KRW8 73 aa4.18□□□□□ -1.74
CD44-226ENST00000527889 MUSKO15146 869 aa4.18□□□□□ -1.74
CD44-226ENST00000527889 POLR3GO15318 223 aaPredicted RBP4.18□□□□□ -1.74
CD44-226ENST00000527889 CHADO15335 359 aa4.18□□□□□ -1.74
CD44-226ENST00000527889 AVILO75366 819 aa4.18□□□□□ -1.74
CD44-226ENST00000527889 MOSPD3O75425 235 aa4.18□□□□□ -1.74
CD44-226ENST00000527889 SKAP2O75563 359 aaPredicted RBP4.18□□□□□ -1.74
CD44-226ENST00000527889 B3GALNT1O75752 331 aa4.18□□□□□ -1.74
CD44-226ENST00000527889 SYF2O95926 243 aaKnown RBP4.18□□□□□ -1.74
CD44-226ENST00000527889 JCHAINP01591 159 aa4.18□□□□□ -1.74
CD44-226ENST00000527889 SHBGP04278 402 aa4.18□□□□□ -1.74
CD44-226ENST00000527889 PYGLP06737 847 aa4.18□□□□□ -1.74
CD44-226ENST00000527889 RHOP08100 348 aa4.18□□□□□ -1.74
CD44-226ENST00000527889 DHRS4L1P0CG22 281 aa4.18□□□□□ -1.74
CD44-226ENST00000527889 CD8BP10966 210 aa4.18□□□□□ -1.74
CD44-226ENST00000527889 BRAFP15056 766 aa4.18□□□□□ -1.74
CD44-226ENST00000527889 PNLIPP16233 465 aa4.18□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms