RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 LIPCP11150 499 aa20.24■□□□□ 0.83
VPS28-206ENST00000526734 PSMA3P25788 255 aa20.24■□□□□ 0.83
VPS28-206ENST00000526734 TSPAN7P41732 249 aa20.24■□□□□ 0.83
VPS28-206ENST00000526734 MAPK10P53779 464 aa20.24■□□□□ 0.83
VPS28-206ENST00000526734 RAB15P59190 212 aa20.24■□□□□ 0.83
VPS28-206ENST00000526734 SEPT7Q16181 437 aaKnown RBP20.24■□□□□ 0.83
VPS28-206ENST00000526734 FNBP1LQ5T0N5 605 aa20.24■□□□□ 0.83
VPS28-206ENST00000526734 RCBTB1Q8NDN9 531 aa20.24■□□□□ 0.83
VPS28-206ENST00000526734 NCSTNQ92542 709 aa20.24■□□□□ 0.83
VPS28-206ENST00000526734 DNAJC1Q96KC8 554 aaKnown RBP20.24■□□□□ 0.83
VPS28-206ENST00000526734 TAAR9Q96RI9 348 aa20.24■□□□□ 0.83
VPS28-206ENST00000526734 DDA1Q9BW61 102 aa20.24■□□□□ 0.83
VPS28-206ENST00000526734 HOMER3Q9NSC5 361 aa20.24■□□□□ 0.83
VPS28-206ENST00000526734 ACSL5Q9ULC5 683 aa20.24■□□□□ 0.83
VPS28-206ENST00000526734 TRBV5-4A0A0C4DH59 114 aa20.23■□□□□ 0.83
VPS28-206ENST00000526734 IQCJ-SCHIP1C9J366 451 aaPredicted RBP20.23■□□□□ 0.83
VPS28-206ENST00000526734 TOX3O15405 576 aaPredicted RBP20.23■□□□□ 0.83
VPS28-206ENST00000526734 ANKRD34CP0C6C1 535 aa20.23■□□□□ 0.83
VPS28-206ENST00000526734 RPL10P27635 214 aaKnown RBP20.23■□□□□ 0.83
VPS28-206ENST00000526734 MC4RP32245 332 aa20.23■□□□□ 0.83
VPS28-206ENST00000526734 ETV5P41161 510 aa20.23■□□□□ 0.83
VPS28-206ENST00000526734 MAPK9P45984 424 aa20.23■□□□□ 0.83
VPS28-206ENST00000526734 LMAN1P49257 510 aa20.23■□□□□ 0.83
VPS28-206ENST00000526734 CLN3Q13286 438 aa20.23■□□□□ 0.83
VPS28-206ENST00000526734 SEMA5AQ13591 1074 aa20.23■□□□□ 0.83
VPS28-206ENST00000526734 SEPT6Q14141 434 aa20.23■□□□□ 0.83
VPS28-206ENST00000526734 SKIDA1Q1XH10 827 aa20.23■□□□□ 0.83
VPS28-206ENST00000526734 ARHGAP22Q7Z5H3 698 aa20.23■□□□□ 0.83
VPS28-206ENST00000526734 DNAAF3Q8N9W5 541 aa20.23■□□□□ 0.83
VPS28-206ENST00000526734 OR2L2Q8NH16 312 aa20.23■□□□□ 0.83
VPS28-206ENST00000526734 C1orf54Q8WWF1 131 aa20.23■□□□□ 0.83
VPS28-206ENST00000526734 USP7Q93009 1102 aa20.23■□□□□ 0.83
VPS28-206ENST00000526734 UBL7Q96S82 380 aaPredicted RBP20.23■□□□□ 0.83
VPS28-206ENST00000526734 TLR10Q9BXR5 811 aa20.23■□□□□ 0.83
VPS28-206ENST00000526734 ASPSCR1Q9BZE9 553 aa20.23■□□□□ 0.83
VPS28-206ENST00000526734 VPS37BQ9H9H4 285 aa20.23■□□□□ 0.83
VPS28-206ENST00000526734 GRPEL1Q9HAV7 217 aa20.23■□□□□ 0.83
VPS28-206ENST00000526734 ETNK1Q9HBU6 452 aa20.23■□□□□ 0.83
VPS28-206ENST00000526734 SLC40A1Q9NP59 571 aa20.23■□□□□ 0.83
VPS28-206ENST00000526734 RIMKLBQ9ULI2 386 aa20.23■□□□□ 0.83
VPS28-206ENST00000526734 DRG1Q9Y295 367 aaKnown RBP20.23■□□□□ 0.83
VPS28-206ENST00000526734 ITPR1Q14643 2758 aa20.23■□□□□ 0.83
VPS28-206ENST00000526734 IGLV3-16A0A075B6K0 115 aa20.22■□□□□ 0.83
VPS28-206ENST00000526734 PRAMEF33A0A0G2JMD5 474 aa20.22■□□□□ 0.83
VPS28-206ENST00000526734 PRAMEF10O60809 474 aa20.22■□□□□ 0.83
VPS28-206ENST00000526734 UBXN7O94888 489 aa20.22■□□□□ 0.83
VPS28-206ENST00000526734 GSTM1P09488 218 aa20.22■□□□□ 0.83
VPS28-206ENST00000526734 CA5AP35218 305 aa20.22■□□□□ 0.83
VPS28-206ENST00000526734 PRLHRP49683 370 aa20.22■□□□□ 0.83
VPS28-206ENST00000526734 DRG2P55039 364 aaKnown RBP20.22■□□□□ 0.83
VPS28-206ENST00000526734 TMPRSS15P98073 1019 aa20.22■□□□□ 0.83
VPS28-206ENST00000526734 GSTM4Q03013 218 aa20.22■□□□□ 0.83
VPS28-206ENST00000526734 CACNG1Q06432 222 aa20.22■□□□□ 0.83
VPS28-206ENST00000526734 POU6F1Q14863 301 aa20.22■□□□□ 0.83
VPS28-206ENST00000526734 KIF26BQ2KJY2 2108 aa20.22■□□□□ 0.83
VPS28-206ENST00000526734 METRNLQ641Q3 311 aa20.22■□□□□ 0.83
VPS28-206ENST00000526734 KLHL35Q6PF15 583 aa20.22■□□□□ 0.83
VPS28-206ENST00000526734 PPP1R21Q6ZMI0 780 aa20.22■□□□□ 0.83
VPS28-206ENST00000526734 HM13Q8TCT9 377 aa20.22■□□□□ 0.83
VPS28-206ENST00000526734 SNRNP27Q8WVK2 155 aaKnown RBP20.22■□□□□ 0.83
VPS28-206ENST00000526734 SGF29Q96ES7 293 aa20.22■□□□□ 0.83
VPS28-206ENST00000526734 TEFMQ96QE5 360 aaKnown RBP20.22■□□□□ 0.83
VPS28-206ENST00000526734 TBC1D10AQ9BXI6 508 aa20.22■□□□□ 0.83
VPS28-206ENST00000526734 RAB6BQ9NRW1 208 aa20.22■□□□□ 0.83
VPS28-206ENST00000526734 ZDHHC3Q9NYG2 299 aa20.22■□□□□ 0.83
VPS28-206ENST00000526734 TMEM9Q9P0T7 183 aa20.22■□□□□ 0.83
VPS28-206ENST00000526734 PCDHB11Q9Y5F2 797 aa20.22■□□□□ 0.83
VPS28-206ENST00000526734 C17orf113A0A1B0GUU1 675 aa20.21■□□□□ 0.83
VPS28-206ENST00000526734 HEATR9A2RTY3 570 aa20.21■□□□□ 0.83
VPS28-206ENST00000526734 MROH6A6NGR9 719 aa20.21■□□□□ 0.83
VPS28-206ENST00000526734 OR52A4PA6NMU1 304 aa20.21■□□□□ 0.83
VPS28-206ENST00000526734 C9orf172C9J069 976 aa20.21■□□□□ 0.83
VPS28-206ENST00000526734 AP3B1O00203 1094 aa20.21■□□□□ 0.83
VPS28-206ENST00000526734 QSOX1O00391 747 aa20.21■□□□□ 0.83
VPS28-206ENST00000526734 FGGP02679 453 aa20.21■□□□□ 0.83
VPS28-206ENST00000526734 C9P02748 559 aa20.21■□□□□ 0.83
VPS28-206ENST00000526734 FGF3P11487 239 aaPredicted RBP20.21■□□□□ 0.83
VPS28-206ENST00000526734 CCL4P13236 92 aa20.21■□□□□ 0.83
VPS28-206ENST00000526734 ATP1B2P14415 290 aaPredicted RBP20.21■□□□□ 0.83
VPS28-206ENST00000526734 AMD1P17707 334 aa20.21■□□□□ 0.83
VPS28-206ENST00000526734 TPH1P17752 444 aa20.21■□□□□ 0.83
VPS28-206ENST00000526734 CXADRP78310 365 aa20.21■□□□□ 0.83
VPS28-206ENST00000526734 VAC14Q08AM6 782 aa20.21■□□□□ 0.83
VPS28-206ENST00000526734 SNX1Q13596 522 aa20.21■□□□□ 0.83
VPS28-206ENST00000526734 NFE2L1Q14494 772 aa20.21■□□□□ 0.83
VPS28-206ENST00000526734 SIX1Q15475 284 aaPredicted RBP20.21■□□□□ 0.83
VPS28-206ENST00000526734 ZRANB3Q5FWF4 1079 aa20.21■□□□□ 0.83
VPS28-206ENST00000526734 DET1Q7L5Y6 550 aa20.21■□□□□ 0.83
VPS28-206ENST00000526734 NLRP9Q7RTR0 991 aa20.21■□□□□ 0.83
VPS28-206ENST00000526734 LSM14AQ8ND56 463 aaKnown RBP20.21■□□□□ 0.83
VPS28-206ENST00000526734 ZFPM2Q8WW38 1151 aa20.21■□□□□ 0.83
VPS28-206ENST00000526734 PEX13Q92968 403 aa20.21■□□□□ 0.83
VPS28-206ENST00000526734 CRELD1Q96HD1 420 aa20.21■□□□□ 0.83
VPS28-206ENST00000526734 CDKN2AIPNLQ96HQ2 116 aa20.21■□□□□ 0.83
VPS28-206ENST00000526734 RANBP9Q96S59 729 aa20.21■□□□□ 0.83
VPS28-206ENST00000526734 CCNL2Q96S94 520 aaPredicted RBP20.21■□□□□ 0.83
VPS28-206ENST00000526734 ZPBPQ9BS86 351 aa20.21■□□□□ 0.83
VPS28-206ENST00000526734 CCM2Q9BSQ5 444 aa20.21■□□□□ 0.83
VPS28-206ENST00000526734 RAB33BQ9H082 229 aa20.21■□□□□ 0.83
VPS28-206ENST00000526734 EIF2B3Q9NR50 452 aaKnown RBP20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms