RNA–Protein interactions for RNA: ENST00000521253.1

TRIM35-203, Transcript of tripartite motif containing 35, humanhuman

TSL 1 (best) BASIC

Gene TRIM35, Length 1,215 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35-203ENST00000521253 PCDHGA8Q9Y5G5 932 aa20.28■□□□□ 0.84
TRIM35-203ENST00000521253 IGLV3-16A0A075B6K0 115 aa20.27■□□□□ 0.84
TRIM35-203ENST00000521253 TCRBV7S3A2A0A539 114 aa20.27■□□□□ 0.84
TRIM35-203ENST00000521253 CCDC162PA2VCL2 907 aa20.27■□□□□ 0.84
TRIM35-203ENST00000521253 OR51F1A6NGY5 319 aa20.27■□□□□ 0.84
TRIM35-203ENST00000521253 OR52A4PA6NMU1 304 aa20.27■□□□□ 0.84
TRIM35-203ENST00000521253 TLX3O43711 291 aaPredicted RBP20.27■□□□□ 0.84
TRIM35-203ENST00000521253 KRT14P02533 472 aa20.27■□□□□ 0.84
TRIM35-203ENST00000521253 ATP1B2P14415 290 aaPredicted RBP20.27■□□□□ 0.84
TRIM35-203ENST00000521253 HOXB3P14651 431 aaPredicted RBP20.27■□□□□ 0.84
TRIM35-203ENST00000521253 XRCC1P18887 633 aaPredicted RBP20.27■□□□□ 0.84
TRIM35-203ENST00000521253 SESN2P58004 480 aaPredicted RBP20.27■□□□□ 0.84
TRIM35-203ENST00000521253 GPS1Q13098 491 aa20.27■□□□□ 0.84
TRIM35-203ENST00000521253 SQSTM1Q13501 440 aa20.27■□□□□ 0.84
TRIM35-203ENST00000521253 CLCA4Q14CN2 919 aa20.27■□□□□ 0.84
TRIM35-203ENST00000521253 TBC1D25Q3MII6 688 aa20.27■□□□□ 0.84
TRIM35-203ENST00000521253 CCDC137Q6PK04 289 aaKnown RBP20.27■□□□□ 0.84
TRIM35-203ENST00000521253 RAB11FIP2Q7L804 512 aa20.27■□□□□ 0.84
TRIM35-203ENST00000521253 TRIM48Q8IWZ4 208 aa20.27■□□□□ 0.84
TRIM35-203ENST00000521253 HEXDCQ8WVB3 486 aa20.27■□□□□ 0.84
TRIM35-203ENST00000521253 RIMKLBQ9ULI2 386 aa20.27■□□□□ 0.84
TRIM35-203ENST00000521253 CFAP47Q6ZTR5 3102 aa20.26■□□□□ 0.83
TRIM35-203ENST00000521253 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP20.26■□□□□ 0.83
TRIM35-203ENST00000521253 MGAT4DA6NG13 374 aa20.26■□□□□ 0.83
TRIM35-203ENST00000521253 PHF2O75151 1096 aa20.26■□□□□ 0.83
TRIM35-203ENST00000521253 VIPP01282 170 aa20.26■□□□□ 0.83
TRIM35-203ENST00000521253 TCP1P17987 556 aaKnown RBP20.26■□□□□ 0.83
TRIM35-203ENST00000521253 TPSB2P20231 275 aa20.26■□□□□ 0.83
TRIM35-203ENST00000521253 FOXN2P32314 431 aa20.26■□□□□ 0.83
TRIM35-203ENST00000521253 PRLHRP49683 370 aa20.26■□□□□ 0.83
TRIM35-203ENST00000521253 TERF1P54274 439 aa20.26■□□□□ 0.83
TRIM35-203ENST00000521253 ACVR1Q04771 509 aa20.26■□□□□ 0.83
TRIM35-203ENST00000521253 CCDC173Q0VFZ6 552 aa20.26■□□□□ 0.83
TRIM35-203ENST00000521253 EIF3IQ13347 325 aaKnown RBP20.26■□□□□ 0.83
TRIM35-203ENST00000521253 TPSAB1Q15661 275 aa20.26■□□□□ 0.83
TRIM35-203ENST00000521253 DBN1Q16643 649 aa20.26■□□□□ 0.83
TRIM35-203ENST00000521253 PHF19Q5T6S3 580 aa20.26■□□□□ 0.83
TRIM35-203ENST00000521253 METRNLQ641Q3 311 aa20.26■□□□□ 0.83
TRIM35-203ENST00000521253 IGF2-ASQ6U949 168 aa20.26■□□□□ 0.83
TRIM35-203ENST00000521253 ZNF534Q76KX8 674 aa20.26■□□□□ 0.83
TRIM35-203ENST00000521253 NLRP9Q7RTR0 991 aa20.26■□□□□ 0.83
TRIM35-203ENST00000521253 PPHLN1Q8NEY8 458 aaKnown RBP20.26■□□□□ 0.83
TRIM35-203ENST00000521253 OR2L2Q8NH16 312 aa20.26■□□□□ 0.83
TRIM35-203ENST00000521253 OR10G6Q8NH81 332 aa20.26■□□□□ 0.83
TRIM35-203ENST00000521253 FGF11Q92914 225 aa20.26■□□□□ 0.83
TRIM35-203ENST00000521253 HDAC10Q969S8 669 aa20.26■□□□□ 0.83
TRIM35-203ENST00000521253 AHCYL2Q96HN2 611 aaKnown RBP20.26■□□□□ 0.83
TRIM35-203ENST00000521253 LINC00615Q96LM1 132 aaPredicted RBP20.26■□□□□ 0.83
TRIM35-203ENST00000521253 SLC46A1Q96NT5 459 aa20.26■□□□□ 0.83
TRIM35-203ENST00000521253 TBC1D10AQ9BXI6 508 aa20.26■□□□□ 0.83
TRIM35-203ENST00000521253 LDHAL6BQ9BYZ2 381 aaPredicted RBP20.26■□□□□ 0.83
TRIM35-203ENST00000521253 ASCL3Q9NQ33 180 aa20.26■□□□□ 0.83
TRIM35-203ENST00000521253 NEU2Q9Y3R4 380 aa20.26■□□□□ 0.83
TRIM35-203ENST00000521253 ZFHX4Q86UP3 3567 aa20.25■□□□□ 0.83
TRIM35-203ENST00000521253 PRAMEF33A0A0G2JMD5 474 aa20.25■□□□□ 0.83
TRIM35-203ENST00000521253 IGHV5-10-1A0A0J9YXX1 117 aa20.25■□□□□ 0.83
TRIM35-203ENST00000521253 GOLGA6L10A0A0M3HER8 536 aa20.25■□□□□ 0.83
TRIM35-203ENST00000521253 AGRPO00253 132 aa20.25■□□□□ 0.83
TRIM35-203ENST00000521253 PLD2O14939 933 aa20.25■□□□□ 0.83
TRIM35-203ENST00000521253 DUX1O43812 170 aa20.25■□□□□ 0.83
TRIM35-203ENST00000521253 HGFP14210 728 aa20.25■□□□□ 0.83
TRIM35-203ENST00000521253 RBMS1P29558 406 aaKnown RBP20.25■□□□□ 0.83
TRIM35-203ENST00000521253 HALP42357 657 aa20.25■□□□□ 0.83
TRIM35-203ENST00000521253 PPM1FP49593 454 aaPredicted RBP20.25■□□□□ 0.83
TRIM35-203ENST00000521253 EPHA4P54764 986 aa20.25■□□□□ 0.83
TRIM35-203ENST00000521253 CRADDP78560 199 aa20.25■□□□□ 0.83
TRIM35-203ENST00000521253 CDK16Q00536 496 aa20.25■□□□□ 0.83
TRIM35-203ENST00000521253 KCNJ11Q14654 390 aa20.25■□□□□ 0.83
TRIM35-203ENST00000521253 PCID2Q5JVF3 399 aa20.25■□□□□ 0.83
TRIM35-203ENST00000521253 XKR5Q6UX68 686 aa20.25■□□□□ 0.83
TRIM35-203ENST00000521253 TMEM26Q6ZUK4 368 aa20.25■□□□□ 0.83
TRIM35-203ENST00000521253 FBXO39Q8N4B4 442 aa20.25■□□□□ 0.83
TRIM35-203ENST00000521253 OR4D9Q8NGE8 314 aa20.25■□□□□ 0.83
TRIM35-203ENST00000521253 SNIP1Q8TAD8 396 aaKnown RBP20.25■□□□□ 0.83
TRIM35-203ENST00000521253 CXorf40BQ96DE9 158 aa20.25■□□□□ 0.83
TRIM35-203ENST00000521253 ZNF578Q96N58 590 aaPredicted RBP20.25■□□□□ 0.83
TRIM35-203ENST00000521253 UCK1Q9HA47 277 aa20.25■□□□□ 0.83
TRIM35-203ENST00000521253 CHRAC1Q9NRG0 131 aa20.25■□□□□ 0.83
TRIM35-203ENST00000521253 POT1Q9NUX5 634 aa20.25■□□□□ 0.83
TRIM35-203ENST00000521253 TMEM9Q9P0T7 183 aa20.25■□□□□ 0.83
TRIM35-203ENST00000521253 FAM8A1Q9UBU6 413 aa20.25■□□□□ 0.83
TRIM35-203ENST00000521253 PSMD13Q9UNM6 376 aa20.25■□□□□ 0.83
TRIM35-203ENST00000521253 LOXL2Q9Y4K0 774 aa20.25■□□□□ 0.83
TRIM35-203ENST00000521253 URB1O60287 2271 aaKnown RBP20.25■□□□□ 0.83
TRIM35-203ENST00000521253 KLHL33A6NCF5 533 aa20.24■□□□□ 0.83
TRIM35-203ENST00000521253 LILRA5A6NI73 299 aa20.24■□□□□ 0.83
TRIM35-203ENST00000521253 AP3B1O00203 1094 aa20.24■□□□□ 0.83
TRIM35-203ENST00000521253 TNFSF15O95150 251 aa20.24■□□□□ 0.83
TRIM35-203ENST00000521253 GOT2P00505 430 aaKnown RBP20.24■□□□□ 0.83
TRIM35-203ENST00000521253 MPSTP25325 297 aa20.24■□□□□ 0.83
TRIM35-203ENST00000521253 MAGEA6P43360 314 aa20.24■□□□□ 0.83
TRIM35-203ENST00000521253 MAPK9P45984 424 aa20.24■□□□□ 0.83
TRIM35-203ENST00000521253 NPY2RP49146 381 aa20.24■□□□□ 0.83
TRIM35-203ENST00000521253 FNTAP49354 379 aa20.24■□□□□ 0.83
TRIM35-203ENST00000521253 LIMK2P53671 638 aa20.24■□□□□ 0.83
TRIM35-203ENST00000521253 C16orf72Q14CZ0 275 aa20.24■□□□□ 0.83
TRIM35-203ENST00000521253 PAPD7Q5XG87 772 aaKnown RBP20.24■□□□□ 0.83
TRIM35-203ENST00000521253 LRRC8BQ6P9F7 803 aa20.24■□□□□ 0.83
TRIM35-203ENST00000521253 AFTPHQ6ULP2 937 aa20.24■□□□□ 0.83
TRIM35-203ENST00000521253 CLDN19Q8N6F1 224 aa20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms