RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 SCN8AQ9UQD0 1980 aa9.17□□□□□ -0.94
HDAC3-215ENST00000519474 WDFY3Q8IZQ1 3526 aa9.17□□□□□ -0.94
HDAC3-215ENST00000519474 KLHL33A6NCF5 533 aa9.17□□□□□ -0.94
HDAC3-215ENST00000519474 LILRA5A6NI73 299 aa9.17□□□□□ -0.94
HDAC3-215ENST00000519474 OR2AG2A6NM03 316 aa9.17□□□□□ -0.94
HDAC3-215ENST00000519474 OR52A4PA6NMU1 304 aa9.17□□□□□ -0.94
HDAC3-215ENST00000519474 K7ENP7 123 aa9.17□□□□□ -0.94
HDAC3-215ENST00000519474 CCL22O00626 93 aa9.17□□□□□ -0.94
HDAC3-215ENST00000519474 LIASO43766 372 aa9.17□□□□□ -0.94
HDAC3-215ENST00000519474 ZNF189O75820 626 aaPredicted RBP9.17□□□□□ -0.94
HDAC3-215ENST00000519474 VIPP01282 170 aa9.17□□□□□ -0.94
HDAC3-215ENST00000519474 C9P02748 559 aa9.17□□□□□ -0.94
HDAC3-215ENST00000519474 ETS1P14921 441 aa9.17□□□□□ -0.94
HDAC3-215ENST00000519474 TYRP1P17643 537 aa9.17□□□□□ -0.94
HDAC3-215ENST00000519474 MSH3P20585 1137 aa9.17□□□□□ -0.94
HDAC3-215ENST00000519474 PSMA3P25788 255 aa9.17□□□□□ -0.94
HDAC3-215ENST00000519474 CSTF2P33240 577 aaKnown RBP eCLIP9.17□□□□□ -0.94
HDAC3-215ENST00000519474 ZNF140P52738 457 aaPredicted RBP9.17□□□□□ -0.94
HDAC3-215ENST00000519474 EPHA4P54764 986 aa9.17□□□□□ -0.94
HDAC3-215ENST00000519474 CCZ1BP86790 482 aa9.17□□□□□ -0.94
HDAC3-215ENST00000519474 CCZ1P86791 482 aaPredicted RBP9.17□□□□□ -0.94
HDAC3-215ENST00000519474 MC2RQ01718 297 aa9.17□□□□□ -0.94
HDAC3-215ENST00000519474 SRSF6Q13247 344 aaKnown RBP9.17□□□□□ -0.94
HDAC3-215ENST00000519474 GTF2H3Q13889 308 aa9.17□□□□□ -0.94
HDAC3-215ENST00000519474 NFE2L1Q14494 772 aa9.17□□□□□ -0.94
HDAC3-215ENST00000519474 RPS6KA1Q15418 735 aa9.17□□□□□ -0.94
HDAC3-215ENST00000519474 SIX1Q15475 284 aaPredicted RBP9.17□□□□□ -0.94
HDAC3-215ENST00000519474 SEPT7Q16181 437 aaKnown RBP9.17□□□□□ -0.94
HDAC3-215ENST00000519474 SNAP47Q5SQN1 464 aa9.17□□□□□ -0.94
HDAC3-215ENST00000519474 INO80CQ6PI98 192 aaPredicted RBP9.17□□□□□ -0.94
HDAC3-215ENST00000519474 ARHGEF18Q6ZSZ5 1173 aa9.17□□□□□ -0.94
HDAC3-215ENST00000519474 PRUNE1Q86TP1 453 aa9.17□□□□□ -0.94
HDAC3-215ENST00000519474 TRAPPC5Q8IUR0 188 aa9.17□□□□□ -0.94
HDAC3-215ENST00000519474 TAB3Q8N5C8 712 aaPredicted RBP9.17□□□□□ -0.94
HDAC3-215ENST00000519474 BEND7Q8N7W2 519 aaPredicted RBP9.17□□□□□ -0.94
HDAC3-215ENST00000519474 BMPERQ8N8U9 685 aa9.17□□□□□ -0.94
HDAC3-215ENST00000519474 ATG4AQ8WYN0 398 aa9.17□□□□□ -0.94
HDAC3-215ENST00000519474 PMEPA1Q969W9 287 aa9.17□□□□□ -0.94
HDAC3-215ENST00000519474 RTP4Q96DX8 246 aa9.17□□□□□ -0.94
HDAC3-215ENST00000519474 CDKN2AIPNLQ96HQ2 116 aa9.17□□□□□ -0.94
HDAC3-215ENST00000519474 PPP1R2P1Q96PQ5 205 aa9.17□□□□□ -0.94
HDAC3-215ENST00000519474 CCNL2Q96S94 520 aaPredicted RBP9.17□□□□□ -0.94
HDAC3-215ENST00000519474 INSM2Q96T92 566 aaPredicted RBP9.17□□□□□ -0.94
HDAC3-215ENST00000519474 TSGA10Q9BZW7 698 aa9.17□□□□□ -0.94
HDAC3-215ENST00000519474 NLE1Q9NVX2 485 aaPredicted RBP9.17□□□□□ -0.94
HDAC3-215ENST00000519474 SMOXQ9NWM0 555 aa9.17□□□□□ -0.94
HDAC3-215ENST00000519474 AKAP7Q9P0M2 348 aaPredicted RBP9.17□□□□□ -0.94
HDAC3-215ENST00000519474 PCDHGA3Q9Y5H0 932 aa9.17□□□□□ -0.94
HDAC3-215ENST00000519474 B3GALT1Q9Y5Z6 326 aa9.17□□□□□ -0.94
HDAC3-215ENST00000519474 TRBV5-4A0A0C4DH59 114 aa9.16□□□□□ -0.94
HDAC3-215ENST00000519474 TEX51A0A1B0GUA7 166 aa9.16□□□□□ -0.94
HDAC3-215ENST00000519474 MGAT4DA6NG13 374 aa9.16□□□□□ -0.94
HDAC3-215ENST00000519474 EFCAB7A8K855 629 aa9.16□□□□□ -0.94
HDAC3-215ENST00000519474 PDZK1P1A8MUH7 402 aa9.16□□□□□ -0.94
HDAC3-215ENST00000519474 GOLGA6L6A8MZA4 724 aa9.16□□□□□ -0.94
HDAC3-215ENST00000519474 B4E171 279 aa9.16□□□□□ -0.94
HDAC3-215ENST00000519474 H7C0S8 307 aa9.16□□□□□ -0.94
HDAC3-215ENST00000519474 DUX1O43812 170 aa9.16□□□□□ -0.94
HDAC3-215ENST00000519474 UBXN7O94888 489 aa9.16□□□□□ -0.94
HDAC3-215ENST00000519474 PRAMEF1O95521 474 aa9.16□□□□□ -0.94
HDAC3-215ENST00000519474 AP2A1O95782 977 aa9.16□□□□□ -0.94
HDAC3-215ENST00000519474 PRSS56P0CW18 603 aa9.16□□□□□ -0.94
HDAC3-215ENST00000519474 AMD1P17707 334 aa9.16□□□□□ -0.94
HDAC3-215ENST00000519474 HADHAP40939 763 aa9.16□□□□□ -0.94
HDAC3-215ENST00000519474 TSPAN7P41732 249 aa9.16□□□□□ -0.94
HDAC3-215ENST00000519474 GRIA1P42261 906 aa9.16□□□□□ -0.94
HDAC3-215ENST00000519474 UCNP55089 124 aa9.16□□□□□ -0.94
HDAC3-215ENST00000519474 TMPRSS3P57727 454 aa9.16□□□□□ -0.94
HDAC3-215ENST00000519474 PDE1BQ01064 536 aa9.16□□□□□ -0.94
HDAC3-215ENST00000519474 SNX1Q13596 522 aa9.16□□□□□ -0.94
HDAC3-215ENST00000519474 RPE65Q16518 533 aa9.16□□□□□ -0.94
HDAC3-215ENST00000519474 CCNG2Q16589 344 aa9.16□□□□□ -0.94
HDAC3-215ENST00000519474 P3H1Q32P28 736 aa9.16□□□□□ -0.94
HDAC3-215ENST00000519474 FNBP1LQ5T0N5 605 aa9.16□□□□□ -0.94
HDAC3-215ENST00000519474 TMEM164Q5U3C3 297 aa9.16□□□□□ -0.94
HDAC3-215ENST00000519474 CCDC81Q6ZN84 652 aa9.16□□□□□ -0.94
HDAC3-215ENST00000519474 DET1Q7L5Y6 550 aa9.16□□□□□ -0.94
HDAC3-215ENST00000519474 GLIS1Q8NBF1 620 aa9.16□□□□□ -0.94
HDAC3-215ENST00000519474 AVL9Q8NBF6 648 aa9.16□□□□□ -0.94
HDAC3-215ENST00000519474 OR52K1Q8NGK4 314 aa9.16□□□□□ -0.94
HDAC3-215ENST00000519474 OR2L2Q8NH16 312 aa9.16□□□□□ -0.94
HDAC3-215ENST00000519474 STYXQ8WUJ0 223 aa9.16□□□□□ -0.94
HDAC3-215ENST00000519474 ART4Q93070 314 aa9.16□□□□□ -0.94
HDAC3-215ENST00000519474 ZNF514Q96K75 400 aaPredicted RBP9.16□□□□□ -0.94
HDAC3-215ENST00000519474 DNAJC1Q96KC8 554 aaKnown RBP9.16□□□□□ -0.94
HDAC3-215ENST00000519474 LINC00615Q96LM1 132 aaPredicted RBP9.16□□□□□ -0.94
HDAC3-215ENST00000519474 C9orf72Q96LT7 481 aa9.16□□□□□ -0.94
HDAC3-215ENST00000519474 UBL7Q96S82 380 aaPredicted RBP9.16□□□□□ -0.94
HDAC3-215ENST00000519474 TLR10Q9BXR5 811 aa9.16□□□□□ -0.94
HDAC3-215ENST00000519474 FRMD8P1Q9BZ68 369 aaPredicted RBP9.16□□□□□ -0.94
HDAC3-215ENST00000519474 STN1Q9H668 368 aaKnown RBP9.16□□□□□ -0.94
HDAC3-215ENST00000519474 LRRC40Q9H9A6 602 aa9.16□□□□□ -0.94
HDAC3-215ENST00000519474 LZTFL1Q9NQ48 299 aa9.16□□□□□ -0.94
HDAC3-215ENST00000519474 FBXO8Q9NRD0 319 aa9.16□□□□□ -0.94
HDAC3-215ENST00000519474 POT1Q9NUX5 634 aa9.16□□□□□ -0.94
HDAC3-215ENST00000519474 PIH1D1Q9NWS0 290 aaKnown RBP9.16□□□□□ -0.94
HDAC3-215ENST00000519474 SLC39A1Q9NY26 324 aa9.16□□□□□ -0.94
HDAC3-215ENST00000519474 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.16□□□□□ -0.94
HDAC3-215ENST00000519474 EPHA6Q9UF33 1036 aa9.16□□□□□ -0.94
HDAC3-215ENST00000519474 PSMD13Q9UNM6 376 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms