RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 CXADRP78310 365 aa11.28□□□□□ -0.6
VCAN-212ENST00000515397 COL9A2Q14055 689 aaPredicted RBP11.28□□□□□ -0.6
VCAN-212ENST00000515397 CCNG2Q16589 344 aa11.28□□□□□ -0.6
VCAN-212ENST00000515397 DUS1LQ6P1R4 473 aaKnown RBP11.28□□□□□ -0.6
VCAN-212ENST00000515397 TMEM71Q6P5X7 295 aa11.28□□□□□ -0.6
VCAN-212ENST00000515397 ABRAXAS1Q6UWZ7 409 aa11.28□□□□□ -0.6
VCAN-212ENST00000515397 PPP1R21Q6ZMI0 780 aa11.28□□□□□ -0.6
VCAN-212ENST00000515397 TMEM26Q6ZUK4 368 aa11.28□□□□□ -0.6
VCAN-212ENST00000515397 GSTA5Q7RTV2 222 aa11.28□□□□□ -0.6
VCAN-212ENST00000515397 SERPINA9Q86WD7 417 aa11.28□□□□□ -0.6
VCAN-212ENST00000515397 FAM129CQ86XR2 697 aa11.28□□□□□ -0.6
VCAN-212ENST00000515397 REXO1L1PQ8IX06 675 aa11.28□□□□□ -0.6
VCAN-212ENST00000515397 CFAP206Q8IYR0 622 aa11.28□□□□□ -0.6
VCAN-212ENST00000515397 CLDN19Q8N6F1 224 aa11.28□□□□□ -0.6
VCAN-212ENST00000515397 CCDC89Q8N998 374 aa11.28□□□□□ -0.6
VCAN-212ENST00000515397 TRIM58Q8NG06 486 aa11.28□□□□□ -0.6
VCAN-212ENST00000515397 OR4D9Q8NGE8 314 aa11.28□□□□□ -0.6
VCAN-212ENST00000515397 OR10G6Q8NH81 332 aa11.28□□□□□ -0.6
VCAN-212ENST00000515397 DTX3LQ8TDB6 740 aa11.28□□□□□ -0.6
VCAN-212ENST00000515397 ART4Q93070 314 aa11.28□□□□□ -0.6
VCAN-212ENST00000515397 CXorf40BQ96DE9 158 aa11.28□□□□□ -0.6
VCAN-212ENST00000515397 DCUN1D1Q96GG9 259 aa11.28□□□□□ -0.6
VCAN-212ENST00000515397 CDKN2AIPNLQ96HQ2 116 aa11.28□□□□□ -0.6
VCAN-212ENST00000515397 ZNF778Q96MU6 729 aa11.28□□□□□ -0.6
VCAN-212ENST00000515397 NRTNQ99748 197 aa11.28□□□□□ -0.6
VCAN-212ENST00000515397 CTRCQ99895 268 aa11.28□□□□□ -0.6
VCAN-212ENST00000515397 AP1M1Q9BXS5 423 aa11.28□□□□□ -0.6
VCAN-212ENST00000515397 WWP1Q9H0M0 922 aa11.28□□□□□ -0.6
VCAN-212ENST00000515397 STN1Q9H668 368 aaKnown RBP11.28□□□□□ -0.6
VCAN-212ENST00000515397 NLE1Q9NVX2 485 aaPredicted RBP11.28□□□□□ -0.6
VCAN-212ENST00000515397 SCN8AQ9UQD0 1980 aa11.28□□□□□ -0.6
VCAN-212ENST00000515397 BPTFQ12830 3046 aa11.27□□□□□ -0.61
VCAN-212ENST00000515397 MGAQ8IWI9 3026 aa11.27□□□□□ -0.61
VCAN-212ENST00000515397 CCDC162PA2VCL2 907 aa11.27□□□□□ -0.61
VCAN-212ENST00000515397 OR5K4A6NMS3 321 aa11.27□□□□□ -0.61
VCAN-212ENST00000515397 EFCAB7A8K855 629 aa11.27□□□□□ -0.61
VCAN-212ENST00000515397 GPR89AB7ZAQ6 455 aa11.27□□□□□ -0.61
VCAN-212ENST00000515397 ZW10O43264 779 aa11.27□□□□□ -0.61
VCAN-212ENST00000515397 DUX1O43812 170 aa11.27□□□□□ -0.61
VCAN-212ENST00000515397 NRDCO43847 1150 aa11.27□□□□□ -0.61
VCAN-212ENST00000515397 KIF1CO43896 1103 aaKnown RBP11.27□□□□□ -0.61
VCAN-212ENST00000515397 GPR89BP0CG08 455 aa11.27□□□□□ -0.61
VCAN-212ENST00000515397 THRAP10827 490 aa11.27□□□□□ -0.61
VCAN-212ENST00000515397 SLC2A4P14672 509 aa11.27□□□□□ -0.61
VCAN-212ENST00000515397 VCLP18206 1134 aa11.27□□□□□ -0.61
VCAN-212ENST00000515397 ITGALP20701 1170 aa11.27□□□□□ -0.61
VCAN-212ENST00000515397 CSTF2P33240 577 aaKnown RBP eCLIP11.27□□□□□ -0.61
VCAN-212ENST00000515397 FDFT1P37268 417 aa11.27□□□□□ -0.61
VCAN-212ENST00000515397 LEPRP48357 1165 aaKnown RBP11.27□□□□□ -0.61
VCAN-212ENST00000515397 VPS41P49754 854 aa11.27□□□□□ -0.61
VCAN-212ENST00000515397 SESN2P58004 480 aaPredicted RBP11.27□□□□□ -0.61
VCAN-212ENST00000515397 CRADDP78560 199 aa11.27□□□□□ -0.61
VCAN-212ENST00000515397 GPLD1P80108 840 aa11.27□□□□□ -0.61
VCAN-212ENST00000515397 CLN3Q13286 438 aa11.27□□□□□ -0.61
VCAN-212ENST00000515397 GPR18Q14330 331 aa11.27□□□□□ -0.61
VCAN-212ENST00000515397 RPE65Q16518 533 aa11.27□□□□□ -0.61
VCAN-212ENST00000515397 ARHGAP40Q5TG30 622 aa11.27□□□□□ -0.61
VCAN-212ENST00000515397 IGF2-ASQ6U949 168 aa11.27□□□□□ -0.61
VCAN-212ENST00000515397 XKR5Q6UX68 686 aa11.27□□□□□ -0.61
VCAN-212ENST00000515397 NAPRTQ6XQN6 538 aa11.27□□□□□ -0.61
VCAN-212ENST00000515397 SNX20Q7Z614 316 aa11.27□□□□□ -0.61
VCAN-212ENST00000515397 CLEC14AQ86T13 490 aa11.27□□□□□ -0.61
VCAN-212ENST00000515397 NXPE1Q8N323 547 aa11.27□□□□□ -0.61
VCAN-212ENST00000515397 SLC35F6Q8N357 371 aa11.27□□□□□ -0.61
VCAN-212ENST00000515397 PRELID2Q8N945 189 aa11.27□□□□□ -0.61
VCAN-212ENST00000515397 GPR150Q8NGU9 434 aa11.27□□□□□ -0.61
VCAN-212ENST00000515397 RSC1A1Q92681 617 aa11.27□□□□□ -0.61
VCAN-212ENST00000515397 HDAC10Q969S8 669 aa11.27□□□□□ -0.61
VCAN-212ENST00000515397 SH3KBP1Q96B97 665 aa11.27□□□□□ -0.61
VCAN-212ENST00000515397 LRRC45Q96CN5 670 aa11.27□□□□□ -0.61
VCAN-212ENST00000515397 TGM7Q96PF1 710 aa11.27□□□□□ -0.61
VCAN-212ENST00000515397 PPP1R2P1Q96PQ5 205 aa11.27□□□□□ -0.61
VCAN-212ENST00000515397 INSM2Q96T92 566 aaPredicted RBP11.27□□□□□ -0.61
VCAN-212ENST00000515397 COPS8Q99627 209 aa11.27□□□□□ -0.61
VCAN-212ENST00000515397 FRMD8P1Q9BZ68 369 aaPredicted RBP11.27□□□□□ -0.61
VCAN-212ENST00000515397 ZCCHC2Q9C0B9 1178 aaKnown RBP11.27□□□□□ -0.61
VCAN-212ENST00000515397 SLC40A1Q9NP59 571 aa11.27□□□□□ -0.61
VCAN-212ENST00000515397 IMP3Q9NV31 184 aaKnown RBP11.27□□□□□ -0.61
VCAN-212ENST00000515397 SMOXQ9NWM0 555 aa11.27□□□□□ -0.61
VCAN-212ENST00000515397 TTC7AQ9ULT0 858 aaPredicted RBP11.27□□□□□ -0.61
VCAN-212ENST00000515397 PRSS21Q9Y6M0 314 aa11.27□□□□□ -0.61
VCAN-212ENST00000515397 TCRBV7S3A2A0A539 114 aa11.26□□□□□ -0.61
VCAN-212ENST00000515397 MGAT4DA6NG13 374 aa11.26□□□□□ -0.61
VCAN-212ENST00000515397 MROH6A6NGR9 719 aa11.26□□□□□ -0.61
VCAN-212ENST00000515397 CAPN5O15484 640 aaPredicted RBP11.26□□□□□ -0.61
VCAN-212ENST00000515397 EFSO43281 561 aa11.26□□□□□ -0.61
VCAN-212ENST00000515397 UBXN7O94888 489 aa11.26□□□□□ -0.61
VCAN-212ENST00000515397 ATP1B2P14415 290 aaPredicted RBP11.26□□□□□ -0.61
VCAN-212ENST00000515397 HADHAP40939 763 aa11.26□□□□□ -0.61
VCAN-212ENST00000515397 SEPHS1P49903 392 aa11.26□□□□□ -0.61
VCAN-212ENST00000515397 PPP1CAP62136 330 aa11.26□□□□□ -0.61
VCAN-212ENST00000515397 BASP1P80723 227 aaKnown RBP11.26□□□□□ -0.61
VCAN-212ENST00000515397 PDE1BQ01064 536 aa11.26□□□□□ -0.61
VCAN-212ENST00000515397 CDH17Q12864 832 aa11.26□□□□□ -0.61
VCAN-212ENST00000515397 EIF3IQ13347 325 aaKnown RBP11.26□□□□□ -0.61
VCAN-212ENST00000515397 SQSTM1Q13501 440 aa11.26□□□□□ -0.61
VCAN-212ENST00000515397 BRD3Q15059 726 aa11.26□□□□□ -0.61
VCAN-212ENST00000515397 DBN1Q16643 649 aa11.26□□□□□ -0.61
VCAN-212ENST00000515397 AGAP9Q5VTM2 703 aa11.26□□□□□ -0.61
VCAN-212ENST00000515397 METRNLQ641Q3 311 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms