RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 APRTP07741 180 aa7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 SYPP08247 313 aa7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 TIMP2P16035 220 aa7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 RENBPP51606 427 aa7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 NKX2-5P52952 324 aaPredicted RBP7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 FGL2Q14314 439 aa7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 LRRC14Q15048 493 aa7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 DPYSL2Q16555 572 aa7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 CARTPTQ16568 116 aa7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 ASTE1Q2TB18 679 aaPredicted RBP7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 IRGCQ6NXR0 463 aa7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 LYSMD3Q7Z3D4 306 aa7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 LDB1Q86U70 411 aaPredicted RBP7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 RASSF3Q86WH2 238 aa7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 SLC38A6Q8IZM9 456 aa7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 ST13P4Q8IZP2 240 aaPredicted RBP7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 SCML4Q8N228 414 aa7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 ZNF557Q8N988 423 aaPredicted RBP7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 OR6P1Q8NGX9 317 aa7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 HNRNPLLQ8WVV9 542 aaKnown RBP7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 AP2M1Q96CW1 435 aa7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 PGAP3Q96FM1 320 aaPredicted RBP7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 VPS39Q96JC1 886 aa7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 PANX2Q96RD6 677 aa7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 AGAP2Q99490 1192 aa7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 NAPGQ99747 312 aaPredicted RBP7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 HS3ST2Q9Y278 367 aa7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 ANGPTL3Q9Y5C1 460 aa7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 PTPRQQ9UMZ3 2332 aa7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 DENND4AQ7Z401 1863 aa7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 TLR4O00206 839 aa7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 LIN7AO14910 233 aaPredicted RBP7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 ZNF821O75541 412 aaPredicted RBP7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 LATS1O95835 1130 aa7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 TUBBP07437 444 aa7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 YBEYP58557 167 aaPredicted RBP7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 PHEXP78562 749 aa7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 HPCAP84074 193 aa7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 NIPAL4Q0D2K0 466 aa7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 SLC12A1Q13621 1099 aa7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 MEA1Q16626 185 aa7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 IFI16Q16666 785 aaKnown RBP7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 TFDP3Q5H9I0 405 aa7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 PIP5KL1Q5T9C9 394 aa7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 CORO6Q6QEF8 472 aa7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 GALNT4Q8N4A0 578 aa7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 C2orf73Q8N5S3 287 aaPredicted RBP7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 RFWD2Q8NHY2 731 aa7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 PPP1R14CQ8TAE6 165 aa7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 ZNF75CPQ92670 426 aaPredicted RBP7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 RIOK2Q9BVS4 552 aaKnown RBP7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 APOBEC3BQ9UH17 382 aaKnown RBP7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 PILRBQ9UKJ0 227 aa7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 DNPEPQ9ULA0 475 aa7.82□□□□□ -1.16
LIMCH1-219ENST00000514096 A0A1W2PPC4 97 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 TMEM202A6NGA9 273 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 GFRA2O00451 464 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 OCM2P0CE71 109 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 OCMP0CE72 109 aaPredicted RBP7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 PRSS56P0CW18 603 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 ACP5P13686 325 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 CD97P48960 835 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 PLIN5Q00G26 463 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 LMNB2Q03252 620 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 KYNUQ16719 465 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 LRRC36Q1X8D7 754 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 C4orf22Q6V702 233 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 TRAPPC5Q8IUR0 188 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 ZNF683Q8IZ20 524 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 STMN2Q93045 179 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 PDXPQ96GD0 296 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 SCNM1Q9BWG6 230 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 LHX3Q9UBR4 397 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 TTI1O43156 1089 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 ARHGAP6O43182 974 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 COL6A2P12110 1019 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 ATP6V1B1P15313 513 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 PORP16435 677 aaPredicted RBP7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 MDH1P40925 334 aaKnown RBP7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 ACTR1BP42025 376 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 SERPINB8P50452 374 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 ACTR1AP61163 376 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 TFDP2Q14188 446 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 PDK1Q15118 436 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 HSD11B1LQ7Z5J1 315 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 FAM217AQ8IXS0 508 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 BEND7Q8N7W2 519 aaPredicted RBP7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 CNTD1Q8N815 330 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 MDM1Q8TC05 714 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 LRRC8CQ8TDW0 803 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 PTCD2Q8WV60 388 aaKnown RBP7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 AZIN2Q96A70 460 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 ELMO2Q96JJ3 720 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 OLFM3Q96PB7 478 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 TRAPPC9Q96Q05 1148 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 HAUS8Q9BT25 410 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 SLC13A1Q9BZW2 595 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 LRRC19Q9H756 370 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 IMPACTQ9P2X3 320 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 SUSD2Q9UGT4 822 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms