RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 ZNF501Q96CX3 271 aaPredicted RBP19.87■□□□□ 0.77
SQSTM1-215ENST00000514093 SMAD5Q99717 465 aaKnown RBP19.87■□□□□ 0.77
SQSTM1-215ENST00000514093 TUBB2BQ9BVA1 445 aa19.87■□□□□ 0.77
SQSTM1-215ENST00000514093 MRPL47Q9HD33 250 aaKnown RBP19.87■□□□□ 0.77
SQSTM1-215ENST00000514093 TMPRSS11EQ9UL52 423 aa19.87■□□□□ 0.77
SQSTM1-215ENST00000514093 PSMD13Q9UNM6 376 aa19.87■□□□□ 0.77
SQSTM1-215ENST00000514093 LRRC53A6NM62 1247 aa19.86■□□□□ 0.77
SQSTM1-215ENST00000514093 MEN1O00255 615 aa19.86■□□□□ 0.77
SQSTM1-215ENST00000514093 VEGFDO43915 354 aa19.86■□□□□ 0.77
SQSTM1-215ENST00000514093 GZMAP12544 262 aa19.86■□□□□ 0.77
SQSTM1-215ENST00000514093 HALP42357 657 aa19.86■□□□□ 0.77
SQSTM1-215ENST00000514093 ATP1A4Q13733 1029 aa19.86■□□□□ 0.77
SQSTM1-215ENST00000514093 PLCL1Q15111 1095 aa19.86■□□□□ 0.77
SQSTM1-215ENST00000514093 KYNUQ16719 465 aa19.86■□□□□ 0.77
SQSTM1-215ENST00000514093 HPS6Q86YV9 775 aa19.86■□□□□ 0.77
SQSTM1-215ENST00000514093 TRAPPC5Q8IUR0 188 aa19.86■□□□□ 0.77
SQSTM1-215ENST00000514093 GLIS1Q8NBF1 620 aa19.86■□□□□ 0.77
SQSTM1-215ENST00000514093 ANKRD20A12PQ8NF67 263 aa19.86■□□□□ 0.77
SQSTM1-215ENST00000514093 PPM1MQ96MI6 270 aa19.86■□□□□ 0.77
SQSTM1-215ENST00000514093 ADGRE3Q9BY15 652 aa19.86■□□□□ 0.77
SQSTM1-215ENST00000514093 HRASLS2Q9NWW9 162 aa19.86■□□□□ 0.77
SQSTM1-215ENST00000514093 AMACRQ9UHK6 382 aa19.86■□□□□ 0.77
SQSTM1-215ENST00000514093 PCSK5Q92824 1860 aa19.86■□□□□ 0.77
SQSTM1-215ENST00000514093 ARHGAP10A1A4S6 786 aa19.85■□□□□ 0.77
SQSTM1-215ENST00000514093 TLCD2A6NGC4 264 aa19.85■□□□□ 0.77
SQSTM1-215ENST00000514093 LCA5LO95447 670 aa19.85■□□□□ 0.77
SQSTM1-215ENST00000514093 BPIP17213 487 aa19.85■□□□□ 0.77
SQSTM1-215ENST00000514093 CDK11BP21127 795 aaKnown RBP19.85■□□□□ 0.77
SQSTM1-215ENST00000514093 SSR1P43307 286 aaKnown RBP19.85■□□□□ 0.77
SQSTM1-215ENST00000514093 DCDC1P59894 354 aa19.85■□□□□ 0.77
SQSTM1-215ENST00000514093 TMEM115Q12893 351 aaPredicted RBP19.85■□□□□ 0.77
SQSTM1-215ENST00000514093 ELOAQ14241 798 aaKnown RBP19.85■□□□□ 0.77
SQSTM1-215ENST00000514093 PAFAH1B3Q15102 231 aaKnown RBP19.85■□□□□ 0.77
SQSTM1-215ENST00000514093 ASIC2Q16515 512 aa19.85■□□□□ 0.77
SQSTM1-215ENST00000514093 RPE65Q16518 533 aa19.85■□□□□ 0.77
SQSTM1-215ENST00000514093 ATP13A4Q4VNC1 1196 aa19.85■□□□□ 0.77
SQSTM1-215ENST00000514093 KLHL35Q6PF15 583 aa19.85■□□□□ 0.77
SQSTM1-215ENST00000514093 MED25Q71SY5 747 aa19.85■□□□□ 0.77
SQSTM1-215ENST00000514093 TMC3Q7Z5M5 1100 aa19.85■□□□□ 0.77
SQSTM1-215ENST00000514093 KMT5CQ86Y97 462 aa19.85■□□□□ 0.77
SQSTM1-215ENST00000514093 DSELQ8IZU8 1212 aa19.85■□□□□ 0.77
SQSTM1-215ENST00000514093 TMEM102Q8N9M5 508 aaPredicted RBP19.85■□□□□ 0.77
SQSTM1-215ENST00000514093 CLIP3Q96DZ5 547 aa19.85■□□□□ 0.77
SQSTM1-215ENST00000514093 TSGA13Q96PP4 275 aa19.85■□□□□ 0.77
SQSTM1-215ENST00000514093 NLNQ9BYT8 704 aa19.85■□□□□ 0.77
SQSTM1-215ENST00000514093 GPR63Q9BZJ6 419 aa19.85■□□□□ 0.77
SQSTM1-215ENST00000514093 HAUS2Q9NVX0 235 aa19.85■□□□□ 0.77
SQSTM1-215ENST00000514093 CFAP20Q9Y6A4 193 aaKnown RBP19.85■□□□□ 0.77
SQSTM1-215ENST00000514093 FBN2P35556 2912 aa19.84■□□□□ 0.77
SQSTM1-215ENST00000514093 OR5K3A6NET4 321 aa19.84■□□□□ 0.77
SQSTM1-215ENST00000514093 RAB40ALP0C0E4 278 aa19.84■□□□□ 0.77
SQSTM1-215ENST00000514093 VCLP18206 1134 aa19.84■□□□□ 0.77
SQSTM1-215ENST00000514093 ARCN1P48444 511 aaKnown RBP19.84■□□□□ 0.77
SQSTM1-215ENST00000514093 GSDMDP57764 484 aa19.84■□□□□ 0.77
SQSTM1-215ENST00000514093 ABRQ12979 859 aa19.84■□□□□ 0.77
SQSTM1-215ENST00000514093 PIGHQ14442 188 aaPredicted RBP19.84■□□□□ 0.77
SQSTM1-215ENST00000514093 E4F1Q66K89 784 aaPredicted RBP19.84■□□□□ 0.77
SQSTM1-215ENST00000514093 PDPK2PQ6A1A2 396 aa19.84■□□□□ 0.77
SQSTM1-215ENST00000514093 FAM83HQ6ZRV2 1179 aaPredicted RBP19.84■□□□□ 0.77
SQSTM1-215ENST00000514093 CCNYQ8ND76 341 aa19.84■□□□□ 0.77
SQSTM1-215ENST00000514093 GDAP1Q8TB36 358 aa19.84■□□□□ 0.77
SQSTM1-215ENST00000514093 MARVELD3Q96A59 401 aa19.84■□□□□ 0.77
SQSTM1-215ENST00000514093 BPIFA1Q9NP55 256 aa19.84■□□□□ 0.77
SQSTM1-215ENST00000514093 IGSF5Q9NSI5 407 aa19.84■□□□□ 0.77
SQSTM1-215ENST00000514093 SOHLH2Q9NX45 425 aa19.84■□□□□ 0.77
SQSTM1-215ENST00000514093 ZNF711Q9Y462 761 aa19.84■□□□□ 0.77
SQSTM1-215ENST00000514093 KCNK1O00180 336 aa19.83■□□□□ 0.77
SQSTM1-215ENST00000514093 CAPN1P07384 714 aa19.83■□□□□ 0.77
SQSTM1-215ENST00000514093 CA5AP35218 305 aa19.83■□□□□ 0.77
SQSTM1-215ENST00000514093 GJC1P36383 396 aa19.83■□□□□ 0.77
SQSTM1-215ENST00000514093 RRADP55042 308 aa19.83■□□□□ 0.77
SQSTM1-215ENST00000514093 GBE1Q04446 702 aa19.83■□□□□ 0.77
SQSTM1-215ENST00000514093 GTF2H3Q13889 308 aa19.83■□□□□ 0.77
SQSTM1-215ENST00000514093 DPYSL3Q14195 570 aa19.83■□□□□ 0.77
SQSTM1-215ENST00000514093 ATP13A5Q4VNC0 1218 aa19.83■□□□□ 0.77
SQSTM1-215ENST00000514093 APTXQ7Z2E3 356 aaKnown RBP19.83■□□□□ 0.77
SQSTM1-215ENST00000514093 CNTD1Q8N815 330 aa19.83■□□□□ 0.77
SQSTM1-215ENST00000514093 SGSM3Q96HU1 749 aa19.83■□□□□ 0.77
SQSTM1-215ENST00000514093 TRIB3Q96RU7 358 aa19.83■□□□□ 0.77
SQSTM1-215ENST00000514093 CD180Q99467 661 aa19.83■□□□□ 0.77
SQSTM1-215ENST00000514093 TLR10Q9BXR5 811 aa19.83■□□□□ 0.77
SQSTM1-215ENST00000514093 IMP3Q9NV31 184 aaKnown RBP19.83■□□□□ 0.77
SQSTM1-215ENST00000514093 B3GNT3Q9Y2A9 372 aa19.83■□□□□ 0.77
SQSTM1-215ENST00000514093 NTNG1Q9Y2I2 539 aa19.83■□□□□ 0.77
SQSTM1-215ENST00000514093 COPG1Q9Y678 874 aaKnown RBP19.83■□□□□ 0.77
SQSTM1-215ENST00000514093 CROCCQ5TZA2 2017 aa19.83■□□□□ 0.76
SQSTM1-215ENST00000514093 OTOGQ6ZRI0 2925 aa19.82■□□□□ 0.76
SQSTM1-215ENST00000514093 OR6C74A6NCV1 312 aa19.82■□□□□ 0.76
SQSTM1-215ENST00000514093 LRRC10BA6NIK2 292 aa19.82■□□□□ 0.76
SQSTM1-215ENST00000514093 AURKAO14965 403 aa19.82■□□□□ 0.76
SQSTM1-215ENST00000514093 POP7O75817 140 aaKnown RBP19.82■□□□□ 0.76
SQSTM1-215ENST00000514093 ZBTB11O95625 1053 aaPredicted RBP19.82■□□□□ 0.76
SQSTM1-215ENST00000514093 MYBL1P10243 752 aa19.82■□□□□ 0.76
SQSTM1-215ENST00000514093 SKILP12757 684 aa19.82■□□□□ 0.76
SQSTM1-215ENST00000514093 ARSEP51690 589 aa19.82■□□□□ 0.76
SQSTM1-215ENST00000514093 SLC10A2Q12908 348 aaPredicted RBP19.82■□□□□ 0.76
SQSTM1-215ENST00000514093 ZBTB17Q13105 803 aa19.82■□□□□ 0.76
SQSTM1-215ENST00000514093 PCSK7Q16549 785 aa19.82■□□□□ 0.76
SQSTM1-215ENST00000514093 PTCHD3Q3KNS1 767 aa19.82■□□□□ 0.76
SQSTM1-215ENST00000514093 TMTC4Q5T4D3 741 aa19.82■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms