RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 PAPD5Q8NDF8 572 aaKnown RBP9.15□□□□□ -0.95
LIMCH1-215ENST00000512632 COX4I2Q96KJ9 171 aa9.15□□□□□ -0.95
LIMCH1-215ENST00000512632 C17orf80Q9BSJ5 609 aa9.15□□□□□ -0.95
LIMCH1-215ENST00000512632 TOR3AQ9H497 397 aa9.15□□□□□ -0.95
LIMCH1-215ENST00000512632 CARS2Q9HA77 564 aaKnown RBP9.15□□□□□ -0.95
LIMCH1-215ENST00000512632 RIC8BQ9NVN3 520 aa9.15□□□□□ -0.95
LIMCH1-215ENST00000512632 U3KQV3 271 aa9.15□□□□□ -0.95
LIMCH1-215ENST00000512632 FAM234BA2RU67 622 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 K7EPI3 171 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 UPK1AO00322 258 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 FFAR3O14843 346 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 GPR42O15529 346 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 VPS26AO75436 327 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 GMNNO75496 209 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 GUCA1CO95843 209 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 IMPDH2P12268 514 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 HOXB8P17481 243 aaPredicted RBP9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 AP5B1Q2VPB7 878 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 XKR7Q5GH72 579 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 GRAMD4Q6IC98 578 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 DLEU7Q6UYE1 221 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 ZDHHC13Q8IUH4 622 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 OR10A6Q8NH74 314 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 BPIFB1Q8TDL5 484 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 TADA1Q96BN2 335 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 CGREF1Q99674 301 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 SELENONQ9NZV5 590 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 COQ6Q9Y2Z9 468 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 POLR3HQ9Y535 204 aaPredicted RBP9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 PCDHGA8Q9Y5G5 932 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 PLXNB2O15031 1838 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 E5RI56 91 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 PRAMEF11O60813 436 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 MLYCDO95822 493 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 ANXA6P08133 673 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 IL2P60568 153 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 PHEXP78562 749 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 ZNF773Q6PK81 442 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 ENPP6Q6UWR7 440 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 PIWIL3Q7Z3Z3 882 aaKnown RBP9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 CENPSQ8N2Z9 138 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 TSPEARQ8WU66 669 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 CSF3RQ99062 836 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 CCSER2Q9H7U1 834 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 TMEM165Q9HC07 324 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 VAPAQ9P0L0 249 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 SH3GLB1Q9Y371 365 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 TYW5A2RUC4 315 aaKnown RBP9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 GSTA4O15217 222 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 MBL2P11226 248 aaPredicted RBP9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 MC4RP32245 332 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 RPS24P62847 133 aaKnown RBP9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 CBX3Q13185 183 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 PTGR1Q14914 329 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 NR1D2Q14995 579 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 TYSND1Q2T9J0 566 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 FAM98BQ52LJ0 330 aaKnown RBP9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 MORN1Q5T089 497 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 BROXQ5VW32 411 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 SPESP1Q6UW49 350 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 ABI1Q8IZP0 508 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 PARP8Q8N3A8 854 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 OR13F1Q8NGS4 319 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 SLC22A17Q8WUG5 538 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 DOK1Q99704 481 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 BEGAINQ9BUH8 593 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 FBXO44Q9H4M3 255 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 ACTL8Q9H568 366 aa9.14□□□□□ -0.95
LIMCH1-215ENST00000512632 E2F3O00716 465 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 SCAMP3O14828 347 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 ZNF623O75123 536 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 XYLBO75191 536 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 FUCA1P04066 466 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 C7P10643 843 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 SLC2A4P14672 509 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 AGXTP21549 392 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 HOXC8P31273 242 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 ALDH3A2P51648 485 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 NADSYN1Q6IA69 706 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 SULT1C3Q6IMI6 304 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 CYP20A1Q6UW02 462 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 DCDC5Q6ZRR9 648 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 THAP5Q7Z6K1 395 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 ZFAND4Q86XD8 727 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 PROSER1Q86XN7 944 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 NKAPQ8N5F7 415 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 SEPT5Q99719 369 aaPredicted RBP9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 POPDC3Q9HBV1 291 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 ZFP14Q9HCL3 533 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 FNIP2Q9P278 1114 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 ZNF236Q9UL36 1845 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 IGLV3-10A0A075B6K4 115 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 TOR1BO14657 336 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 TSPAN12O95859 305 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 EPOP01588 193 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 ALPLP05186 524 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 CDH1P12830 882 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 GDF5P43026 501 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 NKG7Q16617 165 aa9.13□□□□□ -0.95
LIMCH1-215ENST00000512632 PARP15Q460N3 678 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms