RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 HSPE1-MOB4S4R3N1 261 aa11.92□□□□□ -0.5
LIMCH1-213ENST00000511496 FAM20BO75063 409 aa11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 POLBP06746 335 aa11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 SBK3P0C264 359 aa11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 ZNF30P17039 623 aa11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 USP10Q14694 798 aaKnown RBP11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 BAK1Q16611 211 aa11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 TDRD10Q5VZ19 366 aaKnown RBP11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 C8orf82Q6P1X6 216 aaPredicted RBP11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 AHSA2Q719I0 299 aa11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 AGBL3Q8NEM8 1001 aa11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 LRRC58Q96CX6 371 aa11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 RNF157Q96PX1 679 aa11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 SORBS1Q9BX66 1292 aaKnown RBP11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 COPS3Q9UNS2 423 aa11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 ACTL7AQ9Y615 435 aa11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 ARFGEF1Q9Y6D6 1849 aa11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 TCRBV5S1A1TA0A578 114 aa11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 TCRBV5S2A0A599 114 aa11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 LINC00862A6NCI5 91 aa11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 H0YC42 278 aa11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 APOL1O14791 398 aa11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 HNRNPDLO14979 420 aaKnown RBP11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 RGS10O43665 173 aa11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 TRUB2O95900 331 aaKnown RBP11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 CAPN3P20807 821 aa11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 SCNN1GP51170 649 aa11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 LIMK2P53671 638 aa11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 OLR1P78380 273 aa11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 SEMA5AQ13591 1074 aa11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 NFYCQ13952 458 aa11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 LETMD1Q6P1Q0 360 aa11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 ZNF704Q6ZNC4 412 aaPredicted RBP11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 RASAL3Q86YV0 1011 aa11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 WDTC1Q8N5D0 677 aa11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 CAMKK1Q8N5S9 505 aa11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 NIPA2Q8N8Q9 360 aa11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 OR52H1Q8NGJ2 320 aa11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 NSMCE2Q96MF7 247 aa11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 GFM1Q96RP9 751 aaKnown RBP11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 PEBP4Q96S96 227 aa11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 CATSPERBQ9H7T0 1116 aa11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 SP110Q9HB58 689 aa11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 PTPRHQ9HD43 1115 aa11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 RASSF1Q9NS23 344 aa11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 AGO1Q9UL18 857 aaKnown RBP11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 RNF6Q9Y252 685 aa11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 CDK5RAP2Q96SN8 1893 aa11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 UPK1AO00322 258 aa11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 PITPNM1O00562 1244 aa11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 FHP07954 510 aa11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 TRAPPC2P0DI81 140 aa11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 TRAPPC2BP0DI82 140 aa11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 NPR3P17342 541 aa11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 RPL17P18621 184 aaKnown RBP11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 PGAM1P18669 254 aa11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 SREBF1P36956 1147 aa11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 GLUD2P49448 558 aa11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 PIK3R6Q5UE93 754 aa11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 TMC8Q8IU68 726 aa11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 RNF135Q8IUD6 432 aa11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 TBRG4Q969Z0 631 aaKnown RBP eCLIP11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 FCRL3Q96P31 734 aaPredicted RBP11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 OPALINQ96PE5 141 aa11.91□□□□□ -0.5
LIMCH1-213ENST00000511496 A0A1W2PQ09 198 aa11.9□□□□□ -0.5
LIMCH1-213ENST00000511496 BCKDKO14874 412 aa11.9□□□□□ -0.5
LIMCH1-213ENST00000511496 PTP4A3O75365 173 aa11.9□□□□□ -0.5
LIMCH1-213ENST00000511496 ERN1O75460 977 aaKnown RBP11.9□□□□□ -0.5
LIMCH1-213ENST00000511496 WDR47O94967 919 aa11.9□□□□□ -0.5
LIMCH1-213ENST00000511496 GLAP06280 429 aa11.9□□□□□ -0.5
LIMCH1-213ENST00000511496 SLURP2P0DP57 97 aa11.9□□□□□ -0.5
LIMCH1-213ENST00000511496 HMGCLP35914 325 aa11.9□□□□□ -0.5
LIMCH1-213ENST00000511496 GTF2BQ00403 316 aa11.9□□□□□ -0.5
LIMCH1-213ENST00000511496 SP2Q02086 613 aa11.9□□□□□ -0.5
LIMCH1-213ENST00000511496 MRPL28Q13084 256 aaKnown RBP11.9□□□□□ -0.5
LIMCH1-213ENST00000511496 TAZQ16635 292 aa11.9□□□□□ -0.5
LIMCH1-213ENST00000511496 ALFQ53S48 1182 aa11.9□□□□□ -0.5
LIMCH1-213ENST00000511496 ARHGAP36Q6ZRI8 547 aa11.9□□□□□ -0.5
LIMCH1-213ENST00000511496 B3GNT8Q7Z7M8 397 aa11.9□□□□□ -0.5
LIMCH1-213ENST00000511496 ZNF680Q8NEM1 530 aa11.9□□□□□ -0.5
LIMCH1-213ENST00000511496 CLHC1Q8NHS4 586 aa11.9□□□□□ -0.5
LIMCH1-213ENST00000511496 CRYGNQ8WXF5 182 aa11.9□□□□□ -0.5
LIMCH1-213ENST00000511496 ARNTL2Q8WYA1 636 aa11.9□□□□□ -0.5
LIMCH1-213ENST00000511496 SLC38A4Q969I6 547 aa11.9□□□□□ -0.5
LIMCH1-213ENST00000511496 PHF21AQ96BD5 680 aa11.9□□□□□ -0.5
LIMCH1-213ENST00000511496 SGTBQ96EQ0 304 aa11.9□□□□□ -0.5
LIMCH1-213ENST00000511496 OR51E2Q9H255 320 aa11.9□□□□□ -0.5
LIMCH1-213ENST00000511496 POMKQ9H5K3 350 aa11.9□□□□□ -0.5
LIMCH1-213ENST00000511496 SPON1Q9HCB6 807 aa11.9□□□□□ -0.5
LIMCH1-213ENST00000511496 RDH8Q9NYR8 311 aa11.9□□□□□ -0.5
LIMCH1-213ENST00000511496 NAALAD2Q9Y3Q0 740 aa11.9□□□□□ -0.5
LIMCH1-213ENST00000511496 PCDHGB2Q9Y5G2 931 aa11.9□□□□□ -0.5
LIMCH1-213ENST00000511496 STON1Q9Y6Q2 735 aa11.9□□□□□ -0.5
LIMCH1-213ENST00000511496 ALS2Q96Q42 1657 aa11.9□□□□□ -0.5
LIMCH1-213ENST00000511496 F8W810 466 aa11.9□□□□□ -0.5
LIMCH1-213ENST00000511496 CITO14578 2027 aa11.9□□□□□ -0.5
LIMCH1-213ENST00000511496 KATNA1O75449 491 aa11.9□□□□□ -0.5
LIMCH1-213ENST00000511496 GRAP2O75791 330 aa11.9□□□□□ -0.5
LIMCH1-213ENST00000511496 SNX4O95219 450 aa11.9□□□□□ -0.5
LIMCH1-213ENST00000511496 CST1P01037 141 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms