RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 TMEM248Q9NWD8 314 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 KIF25Q9UIL4 384 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 DBR1Q9UK59 544 aaKnown RBP3.55□□□□□ -1.84
USP53-205ENST00000509769 FLVCR2Q9UPI3 526 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 ADAM18Q9Y3Q7 739 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 PCDHGA5Q9Y5G8 931 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 XDHP47989 1333 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 FAM208AQ9UK61 1670 aaKnown RBP3.54□□□□□ -1.84
USP53-205ENST00000509769 PPLO60437 1756 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 LOC100506127A0A0U1RQW1 187 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 EFCAB9A8MZ26 197 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 BHMG1C9JSJ3 638 aaPredicted RBP3.54□□□□□ -1.84
USP53-205ENST00000509769 VAMP4O75379 141 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 SNCGO76070 127 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 LSM8O95777 96 aaKnown RBP3.54□□□□□ -1.84
USP53-205ENST00000509769 RLN1P04808 185 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 SRCP12931 536 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 CHRNB2P17787 502 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 HNF1AP20823 631 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 CCNOP22674 350 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 KELP23276 732 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 CDK2P24941 298 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 HSD3B2P26439 372 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 PTBP1P26599 531 aaKnown RBP eCLIP3.54□□□□□ -1.842e-7■■■■■ 29.1
USP53-205ENST00000509769 ETFBP38117 255 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 S100A10P60903 97 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 ADAM8P78325 824 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 KLF10Q13118 480 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 MADCAM1Q13477 382 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 RIN1Q13671 783 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 MED22Q15528 200 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 MPPE1Q53F39 396 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 EPHA10Q5JZY3 1008 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 PPP1R26Q5T8A7 1209 aaPredicted RBP3.54□□□□□ -1.84
USP53-205ENST00000509769 RNF220Q5VTB9 566 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 ANKRD22Q5VYY1 191 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 PLA2G4FQ68DD2 849 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 GAREM2Q75VX8 874 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 COX15Q7KZN9 410 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 LRRC70Q7Z2Q7 622 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 FAM122BQ7Z309 247 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 ZNF438Q7Z4V0 828 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 DSELQ8IZU8 1212 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 DNAJC22Q8N4W6 341 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 ZCCHC9Q8N567 271 aaKnown RBP3.54□□□□□ -1.84
USP53-205ENST00000509769 KCT2Q8NC54 265 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 OR1M1Q8NGA1 313 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 OR1J4Q8NGS1 313 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 OR8S1Q8NH09 359 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 SLC39A7Q92504 469 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 AURKBQ96GD4 344 aaPredicted RBP3.54□□□□□ -1.84
USP53-205ENST00000509769 MARK4Q96L34 752 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 C14orf93Q9H972 538 aaKnown RBP3.54□□□□□ -1.84
USP53-205ENST00000509769 CERS4Q9HA82 394 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 SIAEQ9HAT2 523 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 HCN3Q9P1Z3 774 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 SLC7A8Q9UHI5 535 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 OGDHLQ9ULD0 1010 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 PLAGL2Q9UPG8 496 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 MAPK8IP1Q9UQF2 711 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 GNEQ9Y223 722 aaKnown RBP3.54□□□□□ -1.84
USP53-205ENST00000509769 CMAHPQ9Y471 501 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 PCDHA3Q9Y5H8 950 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 FAM205AQ6ZU69 1335 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 PRR36Q9H6K5 1346 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 A0A088AWK7 358 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 A0A0J9YVX5 310 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 SUPT3HB4E1H0 165 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 H0Y8G0 127 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 TLR4O00206 839 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 BCKDKO14874 412 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 PAPSS1O43252 624 aaPredicted RBP3.54□□□□□ -1.84
USP53-205ENST00000509769 FAM189A1O60320 539 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 JAK2O60674 1132 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 EDF1O60869 148 aaKnown RBP3.54□□□□□ -1.84
USP53-205ENST00000509769 ATG13O75143 517 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 CIAO1O76071 339 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 RHOBTB3O94955 611 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 ALX3O95076 343 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 LRATO95237 230 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 SLC16A8O95907 504 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 FTLP02792 175 aaPredicted RBP3.54□□□□□ -1.84
USP53-205ENST00000509769 PRKCGP05129 697 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 CCNB1P14635 433 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 PPP3CBP16298 524 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 PGAM1P18669 254 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 MAOAP21397 527 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 ZNF10P21506 573 aaPredicted RBP3.54□□□□□ -1.84
USP53-205ENST00000509769 HOXD10P28358 340 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 RPL13AP40429 203 aaKnown RBP3.54□□□□□ -1.84
USP53-205ENST00000509769 RPL35P42766 123 aaKnown RBP3.54□□□□□ -1.84
USP53-205ENST00000509769 FNTBP49356 437 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 THBS3P49746 956 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 ARSFP54793 590 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 INHBEP58166 350 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 SORDQ00796 357 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 SEMA5AQ13591 1074 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 ZNF460Q14592 562 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 TCEA2Q15560 299 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 BAK1Q16611 211 aa3.54□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms