RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 TRMT10CQ7L0Y3 403 aaKnown RBP29.15■■■□□ 2.26
LIMCH1-211ENST00000509638 KANSL1Q7Z3B3 1105 aa29.15■■■□□ 2.26
LIMCH1-211ENST00000509638 LRRC6Q86X45 466 aa29.15■■■□□ 2.26
LIMCH1-211ENST00000509638 TIMM29Q9BSF4 260 aa29.15■■■□□ 2.26
LIMCH1-211ENST00000509638 GSDMCQ9BYG8 508 aa29.15■■■□□ 2.26
LIMCH1-211ENST00000509638 ARID1BQ8NFD5 2236 aaPredicted RBP29.15■■■□□ 2.26
LIMCH1-211ENST00000509638 CXorf49A8MYA2 514 aaPredicted RBP29.14■■■□□ 2.26
LIMCH1-211ENST00000509638 PCDHGA12O60330 932 aa29.14■■■□□ 2.26
LIMCH1-211ENST00000509638 OR56A5P0C7T3 313 aa29.14■■■□□ 2.26
LIMCH1-211ENST00000509638 LEPRP48357 1165 aaKnown RBP29.14■■■□□ 2.26
LIMCH1-211ENST00000509638 ADARP55265 1226 aaKnown RBP29.14■■■□□ 2.26
LIMCH1-211ENST00000509638 EFTUD2Q15029 972 aaKnown RBP eCLIP29.14■■■□□ 2.26
LIMCH1-211ENST00000509638 CTSL3PQ5NE16 218 aa29.14■■■□□ 2.26
LIMCH1-211ENST00000509638 SLC30A9Q6PML9 568 aa29.14■■■□□ 2.26
LIMCH1-211ENST00000509638 SLC25A45Q8N413 288 aa29.14■■■□□ 2.26
LIMCH1-211ENST00000509638 GPBAR1Q8TDU6 330 aa29.14■■■□□ 2.26
LIMCH1-211ENST00000509638 BIRC8Q96P09 236 aa29.14■■■□□ 2.26
LIMCH1-211ENST00000509638 KLC4Q9NSK0 619 aa29.14■■■□□ 2.26
LIMCH1-211ENST00000509638 FAM8A1Q9UBU6 413 aa29.14■■■□□ 2.26
LIMCH1-211ENST00000509638 RAB21Q9UL25 225 aa29.14■■■□□ 2.26
LIMCH1-211ENST00000509638 DNAJC16Q9Y2G8 782 aa29.14■■■□□ 2.26
LIMCH1-211ENST00000509638 FFAR2O15552 330 aa29.13■■■□□ 2.25
LIMCH1-211ENST00000509638 POP7O75817 140 aaKnown RBP29.13■■■□□ 2.25
LIMCH1-211ENST00000509638 FMO4P31512 558 aa29.13■■■□□ 2.25
LIMCH1-211ENST00000509638 ABCG1P45844 678 aa29.13■■■□□ 2.25
LIMCH1-211ENST00000509638 PTRHD1Q6GMV3 140 aaKnown RBP29.13■■■□□ 2.25
LIMCH1-211ENST00000509638 CNSTQ6PJW8 725 aa29.13■■■□□ 2.25
LIMCH1-211ENST00000509638 TAF8Q7Z7C8 310 aa29.13■■■□□ 2.25
LIMCH1-211ENST00000509638 GALNT7Q86SF2 657 aa29.13■■■□□ 2.25
LIMCH1-211ENST00000509638 NRROSQ86YC3 692 aa29.13■■■□□ 2.25
LIMCH1-211ENST00000509638 OSGEPL1Q9H4B0 414 aa29.13■■■□□ 2.25
LIMCH1-211ENST00000509638 PCDHB1Q9Y5F3 818 aa29.13■■■□□ 2.25
LIMCH1-211ENST00000509638 C4orf47A7E2U8 309 aa29.13■■■□□ 2.25
LIMCH1-211ENST00000509638 LMO7DNF2Z398 122 aa29.13■■■□□ 2.25
LIMCH1-211ENST00000509638 HAUS5O94927 633 aa29.13■■■□□ 2.25
LIMCH1-211ENST00000509638 GABRB3P28472 473 aa29.13■■■□□ 2.25
LIMCH1-211ENST00000509638 ACTR1BP42025 376 aa29.13■■■□□ 2.25
LIMCH1-211ENST00000509638 ACTR1AP61163 376 aa29.13■■■□□ 2.25
LIMCH1-211ENST00000509638 UAP1L1Q3KQV9 507 aa29.13■■■□□ 2.25
LIMCH1-211ENST00000509638 AMZ2Q86W34 360 aa29.13■■■□□ 2.25
LIMCH1-211ENST00000509638 SLC26A11Q86WA9 606 aa29.13■■■□□ 2.25
LIMCH1-211ENST00000509638 CTAGE3PQ8IX95 158 aa29.13■■■□□ 2.25
LIMCH1-211ENST00000509638 KIAA2013Q8IYS2 634 aa29.13■■■□□ 2.25
LIMCH1-211ENST00000509638 AENQ8WTP8 325 aaKnown RBP29.13■■■□□ 2.25
LIMCH1-211ENST00000509638 LINC00615Q96LM1 132 aaPredicted RBP29.13■■■□□ 2.25
LIMCH1-211ENST00000509638 NSMCE4AQ9NXX6 385 aa29.13■■■□□ 2.25
LIMCH1-211ENST00000509638 DOLKQ9UPQ8 538 aa29.13■■■□□ 2.25
LIMCH1-211ENST00000509638 CSNK1G3Q9Y6M4 447 aa29.13■■■□□ 2.25
LIMCH1-211ENST00000509638 F8W8V4 182 aa29.12■■■□□ 2.25
LIMCH1-211ENST00000509638 RIPK2O43353 540 aa29.12■■■□□ 2.25
LIMCH1-211ENST00000509638 AHSGP02765 367 aa29.12■■■□□ 2.25
LIMCH1-211ENST00000509638 FTH1P02794 183 aa29.12■■■□□ 2.25
LIMCH1-211ENST00000509638 ESR1P03372 595 aa29.12■■■□□ 2.25
LIMCH1-211ENST00000509638 VCLP18206 1134 aa29.12■■■□□ 2.25
LIMCH1-211ENST00000509638 CD151P48509 253 aa29.12■■■□□ 2.25
LIMCH1-211ENST00000509638 DEFB133Q30KQ1 61 aa29.12■■■□□ 2.25
LIMCH1-211ENST00000509638 STRA8Q7Z7C7 330 aa29.12■■■□□ 2.25
LIMCH1-211ENST00000509638 GKN2Q86XP6 184 aa29.12■■■□□ 2.25
LIMCH1-211ENST00000509638 LKAAEAR1Q8TD35 194 aa29.12■■■□□ 2.25
LIMCH1-211ENST00000509638 ACSS3Q9H6R3 686 aa29.12■■■□□ 2.25
LIMCH1-211ENST00000509638 PCDHGB2Q9Y5G2 931 aa29.12■■■□□ 2.25
LIMCH1-211ENST00000509638 DNMT3AQ9Y6K1 912 aaPredicted RBP29.12■■■□□ 2.25
LIMCH1-211ENST00000509638 CEP250Q9BV73 2442 aa29.11■■■□□ 2.25
LIMCH1-211ENST00000509638 LOC105378220A0A1B0GUY1 285 aaPredicted RBP29.11■■■□□ 2.25
LIMCH1-211ENST00000509638 NEMP2A6NFY4 417 aa29.11■■■□□ 2.25
LIMCH1-211ENST00000509638 IQCF5A8MTL0 148 aa29.11■■■□□ 2.25
LIMCH1-211ENST00000509638 TUBBP07437 444 aa29.11■■■□□ 2.25
LIMCH1-211ENST00000509638 ITGB6P18564 788 aa29.11■■■□□ 2.25
LIMCH1-211ENST00000509638 STPG1Q5TH74 334 aa29.11■■■□□ 2.25
LIMCH1-211ENST00000509638 UHMK1Q8TAS1 419 aaKnown RBP29.11■■■□□ 2.25
LIMCH1-211ENST00000509638 CCM2Q9BSQ5 444 aa29.11■■■□□ 2.25
LIMCH1-211ENST00000509638 FUT8Q9BYC5 575 aa29.11■■■□□ 2.25
LIMCH1-211ENST00000509638 CCDC68Q9H2F9 335 aa29.11■■■□□ 2.25
LIMCH1-211ENST00000509638 GULP1Q9UBP9 304 aa29.11■■■□□ 2.25
LIMCH1-211ENST00000509638 RABGEF1Q9UJ41 708 aa29.11■■■□□ 2.25
LIMCH1-211ENST00000509638 GOLGA4Q13439 2230 aaKnown RBP29.1■■■□□ 2.25
LIMCH1-211ENST00000509638 MGAT4DA6NG13 374 aa29.1■■■□□ 2.25
LIMCH1-211ENST00000509638 ANXA6P08133 673 aa29.1■■■□□ 2.25
LIMCH1-211ENST00000509638 PKMP14618 531 aaKnown RBP29.1■■■□□ 2.25
LIMCH1-211ENST00000509638 NFE2L1Q14494 772 aa29.1■■■□□ 2.25
LIMCH1-211ENST00000509638 EMBQ6PCB8 327 aa29.1■■■□□ 2.25
LIMCH1-211ENST00000509638 KRT222Q8N1A0 295 aa29.1■■■□□ 2.25
LIMCH1-211ENST00000509638 SDR16C5Q8N3Y7 309 aa29.1■■■□□ 2.25
LIMCH1-211ENST00000509638 PPM1NQ8N819 430 aa29.1■■■□□ 2.25
LIMCH1-211ENST00000509638 OR2L2Q8NH16 312 aa29.1■■■□□ 2.25
LIMCH1-211ENST00000509638 HM13Q8TCT9 377 aa29.1■■■□□ 2.25
LIMCH1-211ENST00000509638 ATXN7L3BQ96GX2 97 aa29.1■■■□□ 2.25
LIMCH1-211ENST00000509638 CYTH2Q99418 400 aa29.1■■■□□ 2.25
LIMCH1-211ENST00000509638 TSSK1BQ9BXA7 367 aa29.1■■■□□ 2.25
LIMCH1-211ENST00000509638 TAAR2Q9P1P5 351 aa29.1■■■□□ 2.25
LIMCH1-211ENST00000509638 TXNDC16Q9P2K2 825 aa29.1■■■□□ 2.25
LIMCH1-211ENST00000509638 YY2O15391 372 aa29.09■■■□□ 2.25
LIMCH1-211ENST00000509638 NIPSNAP2O75323 286 aa29.09■■■□□ 2.25
LIMCH1-211ENST00000509638 ABHD2P08910 425 aa29.09■■■□□ 2.25
LIMCH1-211ENST00000509638 ARHGAP8P85298 464 aa29.09■■■□□ 2.25
LIMCH1-211ENST00000509638 DMPKQ09013 629 aa29.09■■■□□ 2.25
LIMCH1-211ENST00000509638 SLC14A1Q13336 389 aa29.09■■■□□ 2.25
LIMCH1-211ENST00000509638 ZNF549Q6P9A3 640 aa29.09■■■□□ 2.25
LIMCH1-211ENST00000509638 FAM83HQ6ZRV2 1179 aaPredicted RBP29.09■■■□□ 2.25
LIMCH1-211ENST00000509638 EPB41L4BQ9H329 900 aa29.09■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms