RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 IKZF3Q9UKT9 509 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 CDV3Q9UKY7 258 aaKnown RBP10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 COL4A1P02462 1669 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 CCDC189A1A4V9 331 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 TRIM24O15164 1050 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 ADH1CP00326 375 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 TRBC1P01850 177 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 OCM2P0CE71 109 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 OCMP0CE72 109 aaPredicted RBP10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 RPL17P18621 184 aaKnown RBP10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 CSKP41240 450 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 TIMM50Q3ZCQ8 353 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 ATXN7L2Q5T6C5 722 aaPredicted RBP10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 BEND5Q7L4P6 421 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 ZNF540Q8NDQ6 660 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 ACDQ96AP0 544 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 LRRC58Q96CX6 371 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 APOLD1Q96LR9 279 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 LRRC3Q9BY71 257 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 PCDHAC1Q9H158 963 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 DOLKQ9UPQ8 538 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 MRPS23Q9Y3D9 190 aaKnown RBP10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 FAM149AA5PLN7 773 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 PTGESO14684 152 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 PER2O15055 1255 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 SIX3O95343 332 aaPredicted RBP10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 CCND3P30281 292 aaPredicted RBP10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 CGB2Q6NT52 195 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 EIF3MQ7L2H7 374 aaKnown RBP10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 C14orf80Q86SX3 495 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 DCBLD1Q8N8Z6 715 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 TMEM40Q8WWA1 233 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 SLC13A3Q8WWT9 602 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 OR8D1Q8WZ84 308 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 KIAA1191Q96A73 305 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 ADI1Q9BV57 179 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 C1orf109Q9NX04 203 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 ETAA1Q9NY74 926 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 ZNF831Q5JPB2 1677 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 LCHNA4D1U4 455 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 H3BN98 237 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 FFAR2O15552 330 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 MED26O95402 600 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 CYP11A1P05108 521 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 CAPGP40121 348 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 MTTPP55157 894 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 PRMT2P55345 433 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 MRPL28Q13084 256 aaKnown RBP10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 SPIDRQ14159 915 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 PLCL1Q15111 1095 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 PHKG1Q16816 387 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 ARMCX4Q5H9R4 360 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 SATL1Q86VE3 508 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 ZC3H7AQ8IWR0 971 aaKnown RBP10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 TXNDC5Q8NBS9 432 aaKnown RBP10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 IL12RB2Q99665 862 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 ARMC7Q9H6L4 198 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 ENTPD4Q9Y227 616 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 TCRBV5S1A1TA0A578 114 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 MTMR11A4FU01 709 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 FPGTO14772 594 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 CNTN5O94779 1100 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 BMP10O95393 424 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 ASLP04424 464 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 GSNP06396 782 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 IL4RP24394 825 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 POM121L1PQ3SYA9 428 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 UBXN11Q5T124 520 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 ZFP28Q8NHY6 868 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 PLEKHG4BQ96PX9 1271 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 TUBGCP5Q96RT8 1024 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 FAIM2Q9BWQ8 316 aa10.64□□□□□ -0.71
LIMCH1-205ENST00000503057 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.63□□□□□ -0.71
LIMCH1-205ENST00000503057 PNMA8CA0A1B0GUJ8 204 aa10.63□□□□□ -0.71
LIMCH1-205ENST00000503057 STX16-NPEPL1H3BU86 382 aa10.63□□□□□ -0.71
LIMCH1-205ENST00000503057 STX16O14662 325 aa10.63□□□□□ -0.71
LIMCH1-205ENST00000503057 NIPSNAP2O75323 286 aa10.63□□□□□ -0.71
LIMCH1-205ENST00000503057 SLC35E2BP0CK96 405 aa10.63□□□□□ -0.71
LIMCH1-205ENST00000503057 PITRM1Q5JRX3 1037 aa10.63□□□□□ -0.71
LIMCH1-205ENST00000503057 PM20D1Q6GTS8 502 aa10.63□□□□□ -0.71
LIMCH1-205ENST00000503057 PNPT1Q8TCS8 783 aaKnown RBP10.63□□□□□ -0.71
LIMCH1-205ENST00000503057 PPCDCQ96CD2 204 aa10.63□□□□□ -0.71
LIMCH1-205ENST00000503057 TSEN34Q9BSV6 310 aaKnown RBP10.63□□□□□ -0.71
LIMCH1-205ENST00000503057 C6orf62Q9GZU0 229 aaPredicted RBP10.63□□□□□ -0.71
LIMCH1-205ENST00000503057 FAM83DQ9H4H8 585 aa10.63□□□□□ -0.71
LIMCH1-205ENST00000503057 PTTG2Q9NZH5 202 aa10.63□□□□□ -0.71
LIMCH1-205ENST00000503057 ASB3Q9Y575 518 aa10.63□□□□□ -0.71
LIMCH1-205ENST00000503057 A0A088AWK7 358 aa10.63□□□□□ -0.71
LIMCH1-205ENST00000503057 TBC1D3BA6NDS4 549 aa10.63□□□□□ -0.71
LIMCH1-205ENST00000503057 K7EPI3 171 aa10.63□□□□□ -0.71
LIMCH1-205ENST00000503057 RAP2AP10114 183 aa10.63□□□□□ -0.71
LIMCH1-205ENST00000503057 KCNQ1P51787 676 aa10.63□□□□□ -0.71
LIMCH1-205ENST00000503057 PNLIPRP1P54315 467 aa10.63□□□□□ -0.71
LIMCH1-205ENST00000503057 NRG1Q02297 640 aaPredicted RBP10.63□□□□□ -0.71
LIMCH1-205ENST00000503057 RING1Q06587 406 aa10.63□□□□□ -0.71
LIMCH1-205ENST00000503057 GNA13Q14344 377 aa10.63□□□□□ -0.71
LIMCH1-205ENST00000503057 TECRLQ5HYJ1 363 aa10.63□□□□□ -0.71
LIMCH1-205ENST00000503057 NPWQ8N729 165 aa10.63□□□□□ -0.71
LIMCH1-205ENST00000503057 NDEL1Q9GZM8 345 aa10.63□□□□□ -0.71
LIMCH1-205ENST00000503057 WDR70Q9NW82 654 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms