RNA–Protein interactions for RNA: ENST00000495981.5

VPS52-222, Transcript of VPS52, GARP complex subunit, human

TSL 1 (best)

Gene VPS52, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-222	ENST00000495981	FUT11	Q495W5	492 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	HECTD3	Q5T447	861 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	C1QTNF12	Q5T7M4	302 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	CACHD1	Q5VU97	1274 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	METRNL	Q641Q3	311 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	CLEC20A	Q6ZU45	233 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	BHLHA9	Q7RTU4	235 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	TMPRSS9	Q7Z410	1059 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	TRMT11	Q7Z4G4	463 aa	Known RBP	4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	NELFCD	Q8IXH7	590 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	FAM217A	Q8IXS0	508 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	CCDC65	Q8IXS2	484 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	SYCP3	Q8IZU3	236 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	NUP93	Q8N1F7	819 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	KLHL36	Q8N4N3	616 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	LINC00301	Q8NCQ3	95 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	PSD4	Q8NDX1	1056 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	POC1B	Q8TC44	478 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	SLC2A14	Q8TDB8	520 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	NOC3L	Q8WTT2	800 aa	Known RBP	4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	TMEM174	Q8WUU8	243 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	FBXO32	Q969P5	355 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	SYAP1	Q96A49	352 aa	Predicted RBP	4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	CCDC127	Q96BQ5	260 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	C3orf49	Q96BT1	292 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	NXPE2	Q96DL1	559 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	ZDHHC12	Q96GR4	267 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	HIC2	Q96JB3	615 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	MMS19	Q96T76	1030 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	NEU1	Q99519	415 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	MECR	Q9BV79	373 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	TRIM5	Q9C035	493 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	SIK2	Q9H0K1	926 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	TMEM168	Q9H0V1	697 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	GHITM	Q9H3K2	345 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	GAREM1	Q9H706	876 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	CXorf36	Q9H7Y0	433 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	NMUR1	Q9HB89	426 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	SPHK2	Q9NRA0	654 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	STARD5	Q9NSY2	213 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	DNAJC17	Q9NVM6	304 aa	Known RBP	4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	TBC1D14	Q9P2M4	693 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	HSF4	Q9ULV5	492 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	ATP8B3	O60423	1300 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	NUMA1	Q14980	2115 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	CCDC168	Q8NDH2	2452 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981		A0A1B0GTL3	188 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981		A0A1W2PNU3	283 aa	Predicted RBP	4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	DRGX	A6NNA5	263 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981		A8MXQ7	604 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	KCNJ18	B7U540	433 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	SPTLC2	O15270	562 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	TNFSF14	O43557	240 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	KLRC4	O43908	158 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	SRGAP2	O75044	1071 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	PTP4A3	O75365	173 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	RASAL1	O95294	804 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	YEATS4	O95619	227 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	MLYCD	O95822	493 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	ASS1	P00966	412 aa	Known RBP	4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	KLKB1	P03952	638 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	CISD3	P0C7P0	127 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	HGF	P14210	728 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	NTSR1	P30989	418 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	GALNS	P34059	522 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	GNL1	P36915	607 aa	Predicted RBP	4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	KCNC1	P48547	511 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	POLD2	P49005	469 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	MFAP3	P55082	362 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	CDH8	P55286	799 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	ASIC1	P78348	528 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	DLG4	P78352	724 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	CEBPZ	Q03701	1054 aa	Known RBP	4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	GAD2	Q05329	585 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	GALNT2	Q10471	571 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	GEN1	Q17RS7	908 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	PRICKLE4	Q2TBC4	344 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	PREPL	Q4J6C6	727 aa	Predicted RBP	4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	ZCWPW2	Q504Y3	356 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	TMEM215	Q68D42	235 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	SPOPL	Q6IQ16	392 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	MSANTD2	Q6P1R3	559 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	LAYN	Q6UX15	382 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	SLC36A4	Q6YBV0	504 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	STXBP4	Q6ZWJ1	553 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	HTR3D	Q70Z44	454 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	H1FNT	Q75WM6	255 aa	Predicted RBP	4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	ENOSF1	Q7L5Y1	443 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	CCDC186	Q7Z3E2	898 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	RABEPK	Q7Z6M1	372 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	SCD5	Q86SK9	330 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	ACOT1	Q86TX2	421 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	TMPRSS12	Q86WS5	348 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	CACUL1	Q86Y37	369 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	ZC3H3	Q8IXZ2	948 aa	Known RBP	4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	ZCCHC9	Q8N567	271 aa	Known RBP	4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	XXYLT1	Q8NBI6	393 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	DNAJB14	Q8TBM8	379 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	ZNF483	Q8TF39	744 aa	Predicted RBP	4.35	□□□□□ -1.71

Retrieved 100 of 20,778 RNA–protein pairs in 103.9 ms