RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 VARSP26640 1264 aaKnown RBP16.33■□□□□ 0.2
CCDC88B-210ENST00000494566 ALDH7A1P49419 539 aaKnown RBP16.33■□□□□ 0.2
CCDC88B-210ENST00000494566 RAB39AQ14964 217 aa16.33■□□□□ 0.2
CCDC88B-210ENST00000494566 ALG1LQ6GMV1 187 aa16.33■□□□□ 0.2
CCDC88B-210ENST00000494566 ERI1Q8IV48 349 aaKnown RBP16.33■□□□□ 0.2
CCDC88B-210ENST00000494566 OR52B6Q8NGF0 335 aa16.33■□□□□ 0.2
CCDC88B-210ENST00000494566 LRRC58Q96CX6 371 aa16.33■□□□□ 0.2
CCDC88B-210ENST00000494566 ITCHQ96J02 903 aa16.33■□□□□ 0.2
CCDC88B-210ENST00000494566 CLSTN3Q9BQT9 956 aa16.33■□□□□ 0.2
CCDC88B-210ENST00000494566 TTLL2Q9BWV7 592 aa16.33■□□□□ 0.2
CCDC88B-210ENST00000494566 UNC80Q8N2C7 3258 aa16.33■□□□□ 0.2
CCDC88B-210ENST00000494566 GBF1Q92538 1859 aa16.33■□□□□ 0.2
CCDC88B-210ENST00000494566 H0Y626 953 aa16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 FXYD1O00168 92 aa16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 IL7RP16871 459 aa16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 SLC6A2P23975 617 aa16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 KPNA1P52294 538 aaPredicted RBP16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 ZXDBP98169 803 aa16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 FOXD4Q12950 439 aaPredicted RBP16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 LCP2Q13094 533 aa16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 SLC2A7Q6PXP3 512 aa16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 MIER2Q8N344 545 aa16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 PAF1Q8N7H5 531 aa16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 CDYL2Q8N8U2 506 aa16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 PCYOX1LQ8NBM8 494 aa16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 OR2T11Q8NH01 316 aa16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 RHEBL1Q8TAI7 183 aa16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 SEPT8Q92599 483 aa16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 DGCR6LQ9BY27 220 aa16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 DERL2Q9GZP9 239 aa16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 HMX1Q9NP08 348 aaPredicted RBP16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 INTS10Q9NVR2 710 aaKnown RBP16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 CHCHD3Q9NX63 227 aaKnown RBP16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 CD274Q9NZQ7 290 aa16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 UTS2RQ9UKP6 389 aa16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 E5RI56 91 aa16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 TOR1BO14657 336 aa16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 TSPAN12O95859 305 aa16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 ALDH1A1P00352 501 aa16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 PKMP14618 531 aaKnown RBP16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 ALDH3B2P48448 385 aa16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 LIPEQ05469 1076 aa16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 CD300CQ08708 224 aa16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 SPOUT1Q5T280 376 aaKnown RBP16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 ANKS6Q68DC2 871 aa16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 ZC3H7AQ8IWR0 971 aaKnown RBP16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 FAM126BQ8IXS8 530 aa16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 KCTD14Q9BQ13 255 aaPredicted RBP16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 HGH1Q9BTY7 390 aa16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 SYTL2Q9HCH5 934 aa16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 PCDH12Q9NPG4 1184 aa16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 TRMT6Q9UJA5 497 aaKnown RBP16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 COMMD10Q9Y6G5 202 aa16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 A0A1B0GVM2 712 aa16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 LCHNA4D1U4 455 aa16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 NOBOXO60393 691 aa16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 OR4F21O95013 312 aa16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 GSK3BP49841 420 aa16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 DGKQP52824 942 aa16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 C5orf22Q49AR2 442 aa16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 CD200R1Q8TD46 325 aa16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 BOCQ9BWV1 1114 aa16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 ABCG8Q9H221 673 aa16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 TLR9Q9NR96 1032 aa16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 TRPM5Q9NZQ8 1165 aa16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 SARDHQ9UL12 918 aa16.32■□□□□ 0.2
CCDC88B-210ENST00000494566 TPP2P29144 1249 aaPredicted RBP16.31■□□□□ 0.2
CCDC88B-210ENST00000494566 LSM3P62310 102 aaKnown RBP16.31■□□□□ 0.2
CCDC88B-210ENST00000494566 IL1RL1Q01638 556 aa16.31■□□□□ 0.2
CCDC88B-210ENST00000494566 ADGRF1Q5T601 910 aa16.31■□□□□ 0.2
CCDC88B-210ENST00000494566 PPP4R4Q6NUP7 873 aa16.31■□□□□ 0.2
CCDC88B-210ENST00000494566 FAM151BQ6UXP7 276 aa16.31■□□□□ 0.2
CCDC88B-210ENST00000494566 LYSMD3Q7Z3D4 306 aa16.31■□□□□ 0.2
CCDC88B-210ENST00000494566 CAMK1DQ8IU85 385 aa16.31■□□□□ 0.2
CCDC88B-210ENST00000494566 TBCDQ9BTW9 1192 aa16.31■□□□□ 0.2
CCDC88B-210ENST00000494566 ANKRD60Q9BZ19 345 aa16.31■□□□□ 0.2
CCDC88B-210ENST00000494566 ELAC1Q9H777 363 aaKnown RBP16.31■□□□□ 0.2
CCDC88B-210ENST00000494566 TIMMDC1Q9NPL8 285 aa16.31■□□□□ 0.2
CCDC88B-210ENST00000494566 SLC8A2Q9UPR5 921 aa16.31■□□□□ 0.2
CCDC88B-210ENST00000494566 U3KQV3 271 aa16.31■□□□□ 0.2
CCDC88B-210ENST00000494566 ILVBLA1L0T0 632 aa16.31■□□□□ 0.2
CCDC88B-210ENST00000494566 H3BMQ9 156 aa16.31■□□□□ 0.2
CCDC88B-210ENST00000494566 FGF4P08620 206 aa16.31■□□□□ 0.2
CCDC88B-210ENST00000494566 MBL2P11226 248 aaPredicted RBP16.31■□□□□ 0.2
CCDC88B-210ENST00000494566 LBPP18428 481 aa16.31■□□□□ 0.2
CCDC88B-210ENST00000494566 ALDH4A1P30038 563 aa16.31■□□□□ 0.2
CCDC88B-210ENST00000494566 MAGEA10P43363 369 aaPredicted RBP16.31■□□□□ 0.2
CCDC88B-210ENST00000494566 OR4D2P58180 307 aa16.31■□□□□ 0.2
CCDC88B-210ENST00000494566 RPL26P61254 145 aaKnown RBP16.31■□□□□ 0.2
CCDC88B-210ENST00000494566 SMAD3P84022 425 aaKnown RBP16.31■□□□□ 0.2
CCDC88B-210ENST00000494566 SELPLGQ14242 412 aa16.31■□□□□ 0.2
CCDC88B-210ENST00000494566 LAPTM4AQ15012 233 aa16.31■□□□□ 0.2
CCDC88B-210ENST00000494566 SLC8B1Q6J4K2 584 aa16.31■□□□□ 0.2
CCDC88B-210ENST00000494566 C16orf87Q6PH81 154 aa16.31■□□□□ 0.2
CCDC88B-210ENST00000494566 CLDN19Q8N6F1 224 aa16.31■□□□□ 0.2
CCDC88B-210ENST00000494566 COG8Q96MW5 612 aa16.31■□□□□ 0.2
CCDC88B-210ENST00000494566 MUS81Q96NY9 551 aa16.31■□□□□ 0.2
CCDC88B-210ENST00000494566 NPLQ9BXD5 320 aaPredicted RBP16.31■□□□□ 0.2
CCDC88B-210ENST00000494566 PCTPQ9UKL6 214 aa16.31■□□□□ 0.2
CCDC88B-210ENST00000494566 C1orf232A0A0U1RR37 186 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms