RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 PXKQ7Z7A4 578 aa3.58□□□□□ -1.84
VPS41-213ENST00000485955 ZNF248Q8NDW4 579 aa3.58□□□□□ -1.84
VPS41-213ENST00000485955 ELMOD3Q96FG2 381 aa3.58□□□□□ -1.84
VPS41-213ENST00000485955 OR2A14Q96R47 310 aa3.58□□□□□ -1.84
VPS41-213ENST00000485955 GAD1Q99259 594 aa3.58□□□□□ -1.84
VPS41-213ENST00000485955 ADPRHL2Q9NX46 363 aa3.58□□□□□ -1.84
VPS41-213ENST00000485955 TRMT1Q9NXH9 659 aaKnown RBP3.58□□□□□ -1.84
VPS41-213ENST00000485955 SMARCA2P51531 1590 aa3.58□□□□□ -1.84
VPS41-213ENST00000485955 ERCC6L2Q5T890 1561 aa3.58□□□□□ -1.84
VPS41-213ENST00000485955 IGKV3D-15A0A087WSY6 115 aa3.57□□□□□ -1.84
VPS41-213ENST00000485955 A0A087X002 238 aa3.57□□□□□ -1.84
VPS41-213ENST00000485955 ANTXRLA6NF34 631 aa3.57□□□□□ -1.84
VPS41-213ENST00000485955 PLK4O00444 970 aa3.57□□□□□ -1.84
VPS41-213ENST00000485955 ZNF821O75541 412 aaPredicted RBP3.57□□□□□ -1.84
VPS41-213ENST00000485955 TBX18O95935 607 aa3.57□□□□□ -1.84
VPS41-213ENST00000485955 HIST1H2ABP04908 130 aa3.57□□□□□ -1.84
VPS41-213ENST00000485955 IGHV4-38-2P0DP08 117 aa3.57□□□□□ -1.84
VPS41-213ENST00000485955 HIST1H2ADP20671 130 aa3.57□□□□□ -1.84
VPS41-213ENST00000485955 MAP2K2P36507 400 aa3.57□□□□□ -1.84
VPS41-213ENST00000485955 MSH2P43246 934 aa3.57□□□□□ -1.84
VPS41-213ENST00000485955 TAF6P49848 677 aa3.57□□□□□ -1.84
VPS41-213ENST00000485955 GPR143P51810 404 aa3.57□□□□□ -1.84
VPS41-213ENST00000485955 TFAP4Q01664 338 aa3.57□□□□□ -1.84
VPS41-213ENST00000485955 EIF4A2Q14240 407 aaKnown RBP3.57□□□□□ -1.84
VPS41-213ENST00000485955 MVPQ14764 893 aaKnown RBP3.57□□□□□ -1.84
VPS41-213ENST00000485955 ALFQ53S48 1182 aa3.57□□□□□ -1.84
VPS41-213ENST00000485955 CFAP77Q6ZQR2 320 aa3.57□□□□□ -1.84
VPS41-213ENST00000485955 HIST3H2AQ7L7L0 130 aa3.57□□□□□ -1.84
VPS41-213ENST00000485955 PPP4R1Q8TF05 950 aa3.57□□□□□ -1.84
VPS41-213ENST00000485955 SMPDL3BQ92485 455 aa3.57□□□□□ -1.84
VPS41-213ENST00000485955 C7orf26Q96N11 449 aa3.57□□□□□ -1.84
VPS41-213ENST00000485955 RAD21L1Q9H4I0 556 aa3.57□□□□□ -1.84
VPS41-213ENST00000485955 IRAK4Q9NWZ3 460 aa3.57□□□□□ -1.84
VPS41-213ENST00000485955 DISP3Q9P2K9 1392 aa3.57□□□□□ -1.84
VPS41-213ENST00000485955 DBNLQ9UJU6 430 aaKnown RBP3.57□□□□□ -1.84
VPS41-213ENST00000485955 CORO1CQ9ULV4 474 aaPredicted RBP3.57□□□□□ -1.84
VPS41-213ENST00000485955 A0A0G2JLW4 131 aa3.56□□□□□ -1.84
VPS41-213ENST00000485955 TMEM8BA6NDV4 472 aa3.56□□□□□ -1.84
VPS41-213ENST00000485955 A6NL46 340 aa3.56□□□□□ -1.84
VPS41-213ENST00000485955 MAGEB17A8MXT2 336 aa3.56□□□□□ -1.84
VPS41-213ENST00000485955 B4E171 279 aa3.56□□□□□ -1.84
VPS41-213ENST00000485955 PLOD2O00469 737 aa3.56□□□□□ -1.84
VPS41-213ENST00000485955 SCAMP1O15126 338 aa3.56□□□□□ -1.84
VPS41-213ENST00000485955 OGG1O15527 345 aa3.56□□□□□ -1.84
VPS41-213ENST00000485955 ZNF500O60304 480 aaPredicted RBP3.56□□□□□ -1.84
VPS41-213ENST00000485955 CCNDBP1O95273 360 aa3.56□□□□□ -1.84
VPS41-213ENST00000485955 RNF224P0DH78 156 aa3.56□□□□□ -1.84
VPS41-213ENST00000485955 ZNF26P17031 533 aaPredicted RBP3.56□□□□□ -1.84
VPS41-213ENST00000485955 GNAZP19086 355 aa3.56□□□□□ -1.84
VPS41-213ENST00000485955 CBLP22681 906 aa3.56□□□□□ -1.84
VPS41-213ENST00000485955 KRT9P35527 623 aa3.56□□□□□ -1.84
VPS41-213ENST00000485955 TSPAN7P41732 249 aa3.56□□□□□ -1.84
VPS41-213ENST00000485955 ZSCAN23Q3MJ62 389 aa3.56□□□□□ -1.84
VPS41-213ENST00000485955 KIAA1644Q3SXP7 199 aa3.56□□□□□ -1.84
VPS41-213ENST00000485955 JAKMIP3Q5VZ66 844 aa3.56□□□□□ -1.84
VPS41-213ENST00000485955 ZNF843Q8N446 348 aa3.56□□□□□ -1.84
VPS41-213ENST00000485955 PDILTQ8N807 584 aa3.56□□□□□ -1.84
VPS41-213ENST00000485955 SEMA4DQ92854 862 aa3.56□□□□□ -1.84
VPS41-213ENST00000485955 ORC3Q9UBD5 711 aaPredicted RBP3.56□□□□□ -1.84
VPS41-213ENST00000485955 ARID4BQ4LE39 1312 aaPredicted RBP3.55□□□□□ -1.84
VPS41-213ENST00000485955 CCDC189A1A4V9 331 aa3.55□□□□□ -1.84
VPS41-213ENST00000485955 C15orf62A8K5M9 175 aa3.55□□□□□ -1.84
VPS41-213ENST00000485955 J3KRW8 73 aa3.55□□□□□ -1.84
VPS41-213ENST00000485955 RNASEH2AO75792 299 aaKnown RBP3.55□□□□□ -1.84
VPS41-213ENST00000485955 CD4P01730 458 aa3.55□□□□□ -1.84
VPS41-213ENST00000485955 PSMA4P25789 261 aaKnown RBP3.55□□□□□ -1.84
VPS41-213ENST00000485955 MAPK4P31152 587 aa3.55□□□□□ -1.84
VPS41-213ENST00000485955 THOP1P52888 689 aa3.55□□□□□ -1.84
VPS41-213ENST00000485955 PPP2R2BQ00005 443 aa3.55□□□□□ -1.84
VPS41-213ENST00000485955 LRMPQ12912 555 aa3.55□□□□□ -1.84
VPS41-213ENST00000485955 PRKAA1Q13131 559 aa3.55□□□□□ -1.84
VPS41-213ENST00000485955 TMEM187Q14656 261 aa3.55□□□□□ -1.84
VPS41-213ENST00000485955 MEP1AQ16819 746 aa3.55□□□□□ -1.84
VPS41-213ENST00000485955 ASPRV1Q53RT3 343 aa3.55□□□□□ -1.84
VPS41-213ENST00000485955 GORABQ5T7V8 394 aa3.55□□□□□ -1.84
VPS41-213ENST00000485955 ACSM2BQ68CK6 577 aa3.55□□□□□ -1.84
VPS41-213ENST00000485955 HAUS3Q68CZ6 603 aa3.55□□□□□ -1.84
VPS41-213ENST00000485955 ZNF772Q68DY9 489 aaPredicted RBP3.55□□□□□ -1.84
VPS41-213ENST00000485955 JADE1Q6IE81 842 aa3.55□□□□□ -1.84
VPS41-213ENST00000485955 MFSD6Q6ZSS7 791 aa3.55□□□□□ -1.84
VPS41-213ENST00000485955 TPRG1Q6ZUI0 275 aa3.55□□□□□ -1.84
VPS41-213ENST00000485955 MYPOPQ86VE0 399 aaPredicted RBP3.55□□□□□ -1.84
VPS41-213ENST00000485955 CERS3Q8IU89 383 aa3.55□□□□□ -1.84
VPS41-213ENST00000485955 CRYBG2Q8N1P7 616 aa3.55□□□□□ -1.84
VPS41-213ENST00000485955 WDR20Q8TBZ3 569 aa3.55□□□□□ -1.84
VPS41-213ENST00000485955 ZNF599Q96NL3 588 aa3.55□□□□□ -1.84
VPS41-213ENST00000485955 ITPAQ9BY32 194 aa3.55□□□□□ -1.84
VPS41-213ENST00000485955 MUC13Q9H3R2 512 aa3.55□□□□□ -1.84
VPS41-213ENST00000485955 SIX2Q9NPC8 291 aa3.55□□□□□ -1.84
VPS41-213ENST00000485955 AASSQ9UDR5 926 aa3.55□□□□□ -1.84
VPS41-213ENST00000485955 MTMR6Q9Y217 621 aa3.55□□□□□ -1.84
VPS41-213ENST00000485955 FRMD3A2A2Y4 597 aa3.54□□□□□ -1.84
VPS41-213ENST00000485955 ERI2A8K979 691 aaKnown RBP3.54□□□□□ -1.84
VPS41-213ENST00000485955 EXTL3O43909 919 aa3.54□□□□□ -1.84
VPS41-213ENST00000485955 OR2C1O95371 312 aa3.54□□□□□ -1.84
VPS41-213ENST00000485955 DDX58O95786 925 aaKnown RBP3.54□□□□□ -1.84
VPS41-213ENST00000485955 IGLV1-44P01699 117 aa3.54□□□□□ -1.84
VPS41-213ENST00000485955 CEACAM1P13688 526 aa3.54□□□□□ -1.84
VPS41-213ENST00000485955 EPHA2P29317 976 aa3.54□□□□□ -1.84
VPS41-213ENST00000485955 ASTE1Q2TB18 679 aaPredicted RBP3.54□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms