RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 IL17CQ9P0M4 197 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 ATXN10Q9UBB4 475 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 NFKBIL1Q9UBC1 381 aaPredicted RBP7.93□□□□□ -1.14
USP40-216ENST00000485943 SLC17A4Q9Y2C5 497 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 UTP11Q9Y3A2 253 aaKnown RBP7.93□□□□□ -1.14
USP40-216ENST00000485943 CEP250Q9BV73 2442 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 ZFC3H1O60293 1989 aaKnown RBP7.93□□□□□ -1.14
USP40-216ENST00000485943 LAMA1P25391 3075 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 KIR2DS5A0A0G2JLQ3 304 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 A0A0G2JNG1 304 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 MED19A0JLT2 244 aaPredicted RBP7.92□□□□□ -1.14
USP40-216ENST00000485943 EME2A4GXA9 379 aaPredicted RBP7.92□□□□□ -1.14
USP40-216ENST00000485943 EFCAB8A8MWE9 144 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 E5RI56 91 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 KIR2DS3K7RE56 304 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 TM4SF5O14894 197 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 DUX1O43812 170 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 MT-CO3P00414 261 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 RPLP0P05388 317 aaKnown RBP7.92□□□□□ -1.14
USP40-216ENST00000485943 MYF5P13349 255 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 ATP1B2P14415 290 aaPredicted RBP7.92□□□□□ -1.14
USP40-216ENST00000485943 TPSB2P20231 275 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 MGAT1P26572 445 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 RBMS1P29558 406 aaKnown RBP7.92□□□□□ -1.14
USP40-216ENST00000485943 ADRA1AP35348 466 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 NSG1P42857 185 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 TTPAP49638 278 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 ARL4DP49703 201 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 ACADVLP49748 655 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 ETF1P62495 437 aaKnown RBP7.92□□□□□ -1.14
USP40-216ENST00000485943 DHX34Q14147 1143 aaKnown RBP7.92□□□□□ -1.14
USP40-216ENST00000485943 KIR2DS5Q14953 304 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 SHBQ15464 509 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 TPSAB1Q15661 275 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 C11orf91Q3C1V1 193 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 PYCR3Q53H96 274 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 CERCAMQ5T4B2 595 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 GPRC6AQ5T6X5 926 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 IZUMO3Q5VZ72 239 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 GUSBP11Q6P575 273 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 LRRC8BQ6P9F7 803 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 TTC23LQ6PF05 361 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 CERS6Q6ZMG9 384 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 DBX2Q6ZNG2 339 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 PRUNE1Q86TP1 453 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 PIM3Q86V86 326 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 SERPINA9Q86WD7 417 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 ATCAYQ86WG3 371 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 CCNJLQ8IV13 435 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 SLC35F3Q8IY50 421 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 PDIK1LQ8N165 341 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 PELI3Q8N2H9 469 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 TTC30BQ8N4P2 665 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 RAB42Q8N4Z0 105 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 PRELID2Q8N945 189 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 OR4L1Q8NH43 312 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 CCL4L1Q8NHW4 92 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 KIF18AQ8NI77 898 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 CALML6Q8TD86 181 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 HDAC10Q969S8 669 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 CCDC74AQ96AQ1 378 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 ZNF669Q96BR6 464 aaPredicted RBP7.92□□□□□ -1.14
USP40-216ENST00000485943 NXPE2Q96DL1 559 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 COX14Q96I36 57 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 FOPNLQ96NB1 174 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 TMEM74Q96NL1 305 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 WDR24Q96S15 920 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 TIMM29Q9BSF4 260 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 RAB17Q9H0T7 212 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 ARNT2Q9HBZ2 717 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 EPB41L5Q9HCM4 733 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 GPR27Q9NS67 375 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 CATSPERZQ9NTU4 200 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 KLF15Q9UIH9 416 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 TCAF1Q9Y4C2 921 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 HEBP2Q9Y5Z4 205 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 FAM169AQ9Y6X4 670 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 COLEC10Q9Y6Z7 277 aa7.92□□□□□ -1.14
USP40-216ENST00000485943 COL5A1P20908 1838 aaPredicted RBP7.92□□□□□ -1.14
USP40-216ENST00000485943 MAGEB16A2A368 324 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 FAM149AA5PLN7 773 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 FAM187AA6NFU0 413 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 SDR42E2A6NKP2 422 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 AGRPO00253 132 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 CCL22O00626 93 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 NUDT21O43809 227 aaKnown RBP7.91□□□□□ -1.14
USP40-216ENST00000485943 CBFA2T3O75081 653 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 TCEA3O75764 348 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 POP7O75817 140 aaKnown RBP7.91□□□□□ -1.14
USP40-216ENST00000485943 RASSF9O75901 435 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 GOT2P00505 430 aaKnown RBP7.91□□□□□ -1.14
USP40-216ENST00000485943 POLBP06746 335 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 CELA2BP08218 269 aaPredicted RBP7.91□□□□□ -1.14
USP40-216ENST00000485943 JMJD7P0C870 316 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 BMP2P12643 396 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 F3P13726 295 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 GM2AP17900 193 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 SPINK2P20155 84 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 ACRV1P26436 265 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 RPL10P27635 214 aaKnown RBP7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms