RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 SUPT20HL2P0C7V6 817 aa5.04□□□□□ -1.6
UPF3B-203ENST00000478840 KELP23276 732 aa5.04□□□□□ -1.6
UPF3B-203ENST00000478840 CDC25CP30307 473 aa5.04□□□□□ -1.6
UPF3B-203ENST00000478840 MTHFRP42898 656 aa5.04□□□□□ -1.6
UPF3B-203ENST00000478840 MXI1P50539 228 aa5.04□□□□□ -1.6
UPF3B-203ENST00000478840 ALDH3A2P51648 485 aa5.04□□□□□ -1.6
UPF3B-203ENST00000478840 CLCNKAP51800 687 aa5.04□□□□□ -1.6
UPF3B-203ENST00000478840 NUDT6P53370 316 aa5.04□□□□□ -1.6
UPF3B-203ENST00000478840 CTSCP53634 463 aa5.04□□□□□ -1.6
UPF3B-203ENST00000478840 CLDN20P56880 219 aa5.04□□□□□ -1.6
UPF3B-203ENST00000478840 TGFB2P61812 414 aa5.04□□□□□ -1.6
UPF3B-203ENST00000478840 SNRPEP62304 92 aaKnown RBP5.04□□□□□ -1.6
UPF3B-203ENST00000478840 YWHAHQ04917 246 aaPredicted RBP5.04□□□□□ -1.6
UPF3B-203ENST00000478840 PTK6Q13882 451 aa5.04□□□□□ -1.6
UPF3B-203ENST00000478840 PTGR1Q14914 329 aa5.04□□□□□ -1.6
UPF3B-203ENST00000478840 MORF4L2Q15014 288 aa5.04□□□□□ -1.6
UPF3B-203ENST00000478840 CTF1Q16619 201 aa5.04□□□□□ -1.6
UPF3B-203ENST00000478840 DNTTIP2Q5QJE6 756 aaKnown RBP5.04□□□□□ -1.6
UPF3B-203ENST00000478840 FAM69BQ5VUD6 431 aa5.04□□□□□ -1.6
UPF3B-203ENST00000478840 FIGLAQ6QHK4 219 aa5.04□□□□□ -1.6
UPF3B-203ENST00000478840 LINC00696Q6ZRV3 163 aa5.04□□□□□ -1.6
UPF3B-203ENST00000478840 TIGD4Q8IY51 512 aa5.04□□□□□ -1.6
UPF3B-203ENST00000478840 SIX6OS1Q8N1H7 587 aa5.04□□□□□ -1.6
UPF3B-203ENST00000478840 NEXN-AS1Q8NBZ9 246 aa5.04□□□□□ -1.6
UPF3B-203ENST00000478840 C9orf43Q8TAL5 461 aaPredicted RBP5.04□□□□□ -1.6
UPF3B-203ENST00000478840 RND1Q92730 232 aa5.04□□□□□ -1.6
UPF3B-203ENST00000478840 ZNF558Q96NG5 402 aa5.04□□□□□ -1.6
UPF3B-203ENST00000478840 SEMA3CQ99985 751 aa5.04□□□□□ -1.6
UPF3B-203ENST00000478840 FUT8Q9BYC5 575 aa5.04□□□□□ -1.6
UPF3B-203ENST00000478840 DBNDD1Q9H9R9 158 aa5.04□□□□□ -1.6
UPF3B-203ENST00000478840 PCDH9Q9HC56 1237 aa5.04□□□□□ -1.6
UPF3B-203ENST00000478840 ZBTB40Q9NUA8 1239 aa5.04□□□□□ -1.6
UPF3B-203ENST00000478840 LEF1Q9UJU2 399 aaPredicted RBP5.04□□□□□ -1.6
UPF3B-203ENST00000478840 FBXL2Q9UKC9 423 aa5.04□□□□□ -1.6
UPF3B-203ENST00000478840 CDH7Q9ULB5 785 aa5.04□□□□□ -1.6
UPF3B-203ENST00000478840 B3GALT5Q9Y2C3 310 aa5.04□□□□□ -1.6
UPF3B-203ENST00000478840 IGSF1Q8N6C5 1336 aa5.03□□□□□ -1.6
UPF3B-203ENST00000478840 IGLV5-39A0A0G2JS06 123 aa5.03□□□□□ -1.6
UPF3B-203ENST00000478840 ANKUB1A6NFN9 424 aa5.03□□□□□ -1.6
UPF3B-203ENST00000478840 SMTNL1A8MU46 457 aa5.03□□□□□ -1.6
UPF3B-203ENST00000478840 TMEM189-UBE2V1I3L0A0 370 aa5.03□□□□□ -1.6
UPF3B-203ENST00000478840 SLC30A4O14863 429 aa5.03□□□□□ -1.6
UPF3B-203ENST00000478840 SPRY3O43610 288 aa5.03□□□□□ -1.6
UPF3B-203ENST00000478840 GAGE7O76087 117 aa5.03□□□□□ -1.6
UPF3B-203ENST00000478840 GBAP04062 536 aa5.03□□□□□ -1.6
UPF3B-203ENST00000478840 RAB40ALP0C0E4 278 aa5.03□□□□□ -1.6
UPF3B-203ENST00000478840 GAGE12FP0CL80 117 aa5.03□□□□□ -1.6
UPF3B-203ENST00000478840 GAGE12GP0CL81 117 aa5.03□□□□□ -1.6
UPF3B-203ENST00000478840 GAGE12IP0CL82 117 aa5.03□□□□□ -1.6
UPF3B-203ENST00000478840 PDGFRAP16234 1089 aa5.03□□□□□ -1.6
UPF3B-203ENST00000478840 EEF1B2P24534 225 aaKnown RBP5.03□□□□□ -1.6
UPF3B-203ENST00000478840 PSMA3P25788 255 aa5.03□□□□□ -1.6
UPF3B-203ENST00000478840 GAGE1Q13065 139 aa5.03□□□□□ -1.6
UPF3B-203ENST00000478840 GAGE4Q13068 117 aa5.03□□□□□ -1.6
UPF3B-203ENST00000478840 UBE2V1Q13404 147 aa5.03□□□□□ -1.6
UPF3B-203ENST00000478840 NFE2L1Q14494 772 aa5.03□□□□□ -1.6
UPF3B-203ENST00000478840 RBMS2Q15434 407 aaKnown RBP5.03□□□□□ -1.6
UPF3B-203ENST00000478840 ZNF674Q2M3X9 581 aa5.03□□□□□ -1.6
UPF3B-203ENST00000478840 TWISTNBQ3B726 338 aaPredicted RBP5.03□□□□□ -1.6
UPF3B-203ENST00000478840 ODF3L2Q3SX64 289 aa5.03□□□□□ -1.6
UPF3B-203ENST00000478840 LEXMQ3ZCV2 418 aa5.03□□□□□ -1.6
UPF3B-203ENST00000478840 FSCBQ5H9T9 825 aa5.03□□□□□ -1.6
UPF3B-203ENST00000478840 NHSL2Q5HYW2 709 aa5.03□□□□□ -1.6
UPF3B-203ENST00000478840 MORN5Q5VZ52 161 aa5.03□□□□□ -1.6
UPF3B-203ENST00000478840 DPY19L2P1Q6NXN4 242 aa5.03□□□□□ -1.6
UPF3B-203ENST00000478840 MOXD1Q6UVY6 613 aa5.03□□□□□ -1.6
UPF3B-203ENST00000478840 DET1Q7L5Y6 550 aa5.03□□□□□ -1.6
UPF3B-203ENST00000478840 OTOAQ7RTW8 1153 aa5.03□□□□□ -1.6
UPF3B-203ENST00000478840 CHCHD4Q8N4Q1 142 aa5.03□□□□□ -1.6
UPF3B-203ENST00000478840 ATAD1Q8NBU5 361 aa5.03□□□□□ -1.6
UPF3B-203ENST00000478840 MOSPD2Q8NHP6 518 aa5.03□□□□□ -1.6
UPF3B-203ENST00000478840 GRAPLQ8TC17 118 aaPredicted RBP5.03□□□□□ -1.6
UPF3B-203ENST00000478840 UTP15Q8TED0 518 aaKnown RBP5.03□□□□□ -1.6
UPF3B-203ENST00000478840 OIT3Q8WWZ8 545 aa5.03□□□□□ -1.6
UPF3B-203ENST00000478840 SLAMF9Q96A28 289 aa5.03□□□□□ -1.6
UPF3B-203ENST00000478840 SPSB1Q96BD6 273 aa5.03□□□□□ -1.6
UPF3B-203ENST00000478840 CAMK1GQ96NX5 476 aa5.03□□□□□ -1.6
UPF3B-203ENST00000478840 MUS81Q96NY9 551 aa5.03□□□□□ -1.6
UPF3B-203ENST00000478840 C16orf70Q9BSU1 422 aa5.03□□□□□ -1.6
UPF3B-203ENST00000478840 FZD8Q9H461 694 aa5.03□□□□□ -1.6
UPF3B-203ENST00000478840 AGO1Q9UL18 857 aaKnown RBP5.03□□□□□ -1.6
UPF3B-203ENST00000478840 H0YGN5 161 aa5.02□□□□□ -1.61
UPF3B-203ENST00000478840 SOCS6O14544 535 aa5.02□□□□□ -1.61
UPF3B-203ENST00000478840 DVL1O14640 695 aa5.02□□□□□ -1.61
UPF3B-203ENST00000478840 SLC16A5O15375 505 aa5.02□□□□□ -1.61
UPF3B-203ENST00000478840 RGS14O43566 566 aa5.02□□□□□ -1.61
UPF3B-203ENST00000478840 CH25HO95992 272 aa5.02□□□□□ -1.61
UPF3B-203ENST00000478840 PRF1P14222 555 aa5.02□□□□□ -1.61
UPF3B-203ENST00000478840 PTMSP20962 102 aa5.02□□□□□ -1.61
UPF3B-203ENST00000478840 HNF4AP41235 474 aa5.02□□□□□ -1.61
UPF3B-203ENST00000478840 RFX2P48378 723 aa5.02□□□□□ -1.61
UPF3B-203ENST00000478840 AMTP48728 403 aa5.02□□□□□ -1.61
UPF3B-203ENST00000478840 PRKCZQ05513 592 aa5.02□□□□□ -1.61
UPF3B-203ENST00000478840 CRYZQ08257 329 aaKnown RBP5.02□□□□□ -1.61
UPF3B-203ENST00000478840 PPP2R5CQ13362 524 aa5.02□□□□□ -1.61
UPF3B-203ENST00000478840 KCNT1Q5JUK3 1230 aa5.02□□□□□ -1.61
UPF3B-203ENST00000478840 SFMBT2Q5VUG0 894 aa5.02□□□□□ -1.61
UPF3B-203ENST00000478840 FAM91A1Q658Y4 838 aa5.02□□□□□ -1.61
UPF3B-203ENST00000478840 SHC4Q6S5L8 630 aa5.02□□□□□ -1.61
UPF3B-203ENST00000478840 Q6ZTK2 550 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms