RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 BEND7Q8N7W2 519 aaPredicted RBP13.84□□□□□ -0.19
UPF3A-204ENST00000475218 ZNF398Q8TD17 642 aa13.84□□□□□ -0.19
UPF3A-204ENST00000475218 BRSK1Q8TDC3 778 aa13.84□□□□□ -0.19
UPF3A-204ENST00000475218 C9orf72Q96LT7 481 aa13.84□□□□□ -0.19
UPF3A-204ENST00000475218 EPB41L1Q9H4G0 881 aa13.84□□□□□ -0.19
UPF3A-204ENST00000475218 ARNT2Q9HBZ2 717 aa13.84□□□□□ -0.19
UPF3A-204ENST00000475218 POT1Q9NUX5 634 aa13.84□□□□□ -0.19
UPF3A-204ENST00000475218 PILRAQ9UKJ1 303 aa13.84□□□□□ -0.19
UPF3A-204ENST00000475218 PKP3Q9Y446 797 aa13.84□□□□□ -0.19
UPF3A-204ENST00000475218 C5orf60A6NFR6 353 aa13.83□□□□□ -0.19
UPF3A-204ENST00000475218 CCL22O00626 93 aa13.83□□□□□ -0.19
UPF3A-204ENST00000475218 STX7O15400 261 aaKnown RBP13.83□□□□□ -0.19
UPF3A-204ENST00000475218 KIF1CO43896 1103 aaKnown RBP13.83□□□□□ -0.19
UPF3A-204ENST00000475218 PPFIA2O75334 1257 aa13.83□□□□□ -0.19
UPF3A-204ENST00000475218 UBXN7O94888 489 aa13.83□□□□□ -0.19
UPF3A-204ENST00000475218 TJP3O95049 919 aa13.83□□□□□ -0.19
UPF3A-204ENST00000475218 IPO7O95373 1038 aaKnown RBP13.83□□□□□ -0.19
UPF3A-204ENST00000475218 PRAMEF1O95521 474 aa13.83□□□□□ -0.19
UPF3A-204ENST00000475218 METTL18O95568 372 aa13.83□□□□□ -0.19
UPF3A-204ENST00000475218 VIPP01282 170 aa13.83□□□□□ -0.19
UPF3A-204ENST00000475218 ANKRD34CP0C6C1 535 aa13.83□□□□□ -0.19
UPF3A-204ENST00000475218 LPOP22079 712 aaPredicted RBP13.83□□□□□ -0.19
UPF3A-204ENST00000475218 IDSP22304 550 aa13.83□□□□□ -0.19
UPF3A-204ENST00000475218 PPP1CAP62136 330 aa13.83□□□□□ -0.19
UPF3A-204ENST00000475218 TMEM220Q6QAJ8 160 aa13.83□□□□□ -0.19
UPF3A-204ENST00000475218 KIAA1328Q86T90 577 aa13.83□□□□□ -0.19
UPF3A-204ENST00000475218 FBXO8Q9NRD0 319 aa13.83□□□□□ -0.19
UPF3A-204ENST00000475218 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.83□□□□□ -0.19
UPF3A-204ENST00000475218 LDB2O43679 373 aa13.83□□□□□ -0.2
UPF3A-204ENST00000475218 SRP72O76094 671 aaKnown RBP13.83□□□□□ -0.2
UPF3A-204ENST00000475218 LIFP15018 202 aa13.83□□□□□ -0.2
UPF3A-204ENST00000475218 CDC25BP30305 580 aa13.83□□□□□ -0.2
UPF3A-204ENST00000475218 ITGA9Q13797 1035 aa13.83□□□□□ -0.2
UPF3A-204ENST00000475218 RPE65Q16518 533 aa13.83□□□□□ -0.2
UPF3A-204ENST00000475218 DCAF12Q5T6F0 453 aa13.83□□□□□ -0.2
UPF3A-204ENST00000475218 PEX26Q7Z412 305 aa13.83□□□□□ -0.2
UPF3A-204ENST00000475218 AMZ2Q86W34 360 aa13.83□□□□□ -0.2
UPF3A-204ENST00000475218 FAM71DQ8N9W8 422 aa13.83□□□□□ -0.2
UPF3A-204ENST00000475218 AVL9Q8NBF6 648 aa13.83□□□□□ -0.2
UPF3A-204ENST00000475218 SPC24Q8NBT2 197 aa13.83□□□□□ -0.2
UPF3A-204ENST00000475218 SLC35B2Q8TB61 432 aa13.83□□□□□ -0.2
UPF3A-204ENST00000475218 HES6Q96HZ4 224 aa13.83□□□□□ -0.2
UPF3A-204ENST00000475218 SLC12A9Q9BXP2 914 aa13.83□□□□□ -0.2
UPF3A-204ENST00000475218 ZMYND15Q9H091 742 aa13.83□□□□□ -0.2
UPF3A-204ENST00000475218 AMFRQ9UKV5 643 aa13.83□□□□□ -0.2
UPF3A-204ENST00000475218 PSMD13Q9UNM6 376 aa13.83□□□□□ -0.2
UPF3A-204ENST00000475218 AAR2Q9Y312 384 aaKnown RBP13.83□□□□□ -0.2
UPF3A-204ENST00000475218 CAPN5O15484 640 aaPredicted RBP13.82□□□□□ -0.2
UPF3A-204ENST00000475218 RAD1O60671 282 aa13.82□□□□□ -0.2
UPF3A-204ENST00000475218 TNNT3P45378 269 aaPredicted RBP13.82□□□□□ -0.2
UPF3A-204ENST00000475218 CAPZBP47756 277 aa13.82□□□□□ -0.2
UPF3A-204ENST00000475218 CDKN1CP49918 316 aaPredicted RBP13.82□□□□□ -0.2
UPF3A-204ENST00000475218 RAB15P59190 212 aa13.82□□□□□ -0.2
UPF3A-204ENST00000475218 SH3BP2P78314 561 aa13.82□□□□□ -0.2
UPF3A-204ENST00000475218 GTF2H3Q13889 308 aa13.82□□□□□ -0.2
UPF3A-204ENST00000475218 FNBP1LQ5T0N5 605 aa13.82□□□□□ -0.2
UPF3A-204ENST00000475218 METRNLQ641Q3 311 aa13.82□□□□□ -0.2
UPF3A-204ENST00000475218 DET1Q7L5Y6 550 aa13.82□□□□□ -0.2
UPF3A-204ENST00000475218 PLXDC1Q8IUK5 500 aa13.82□□□□□ -0.2
UPF3A-204ENST00000475218 TRIM48Q8IWZ4 208 aa13.82□□□□□ -0.2
UPF3A-204ENST00000475218 LILRA3Q8N6C8 439 aaPredicted RBP13.82□□□□□ -0.2
UPF3A-204ENST00000475218 EXTL1Q92935 676 aa13.82□□□□□ -0.2
UPF3A-204ENST00000475218 RNF31Q96EP0 1072 aa13.82□□□□□ -0.2
UPF3A-204ENST00000475218 TGM7Q96PF1 710 aa13.82□□□□□ -0.2
UPF3A-204ENST00000475218 TBL1YQ9BQ87 522 aa13.82□□□□□ -0.2
UPF3A-204ENST00000475218 ASPSCR1Q9BZE9 553 aa13.82□□□□□ -0.2
UPF3A-204ENST00000475218 PCDHB11Q9Y5F2 797 aa13.82□□□□□ -0.2
UPF3A-204ENST00000475218 TLN1Q9Y490 2541 aaKnown RBP13.82□□□□□ -0.2
UPF3A-204ENST00000475218 PRSS56P0CW18 603 aa13.81□□□□□ -0.2
UPF3A-204ENST00000475218 ZNF28P17035 718 aa13.81□□□□□ -0.2
UPF3A-204ENST00000475218 PBLDP30039 288 aaPredicted RBP13.81□□□□□ -0.2
UPF3A-204ENST00000475218 PPM1FP49593 454 aaPredicted RBP13.81□□□□□ -0.2
UPF3A-204ENST00000475218 ZNF658BQ4V348 819 aaPredicted RBP13.81□□□□□ -0.2
UPF3A-204ENST00000475218 DUS1LQ6P1R4 473 aaKnown RBP13.81□□□□□ -0.2
UPF3A-204ENST00000475218 CCDC112Q8NEF3 446 aa13.81□□□□□ -0.2
UPF3A-204ENST00000475218 SPDYE1Q8NFV5 336 aaPredicted RBP13.81□□□□□ -0.2
UPF3A-204ENST00000475218 MED8Q96G25 268 aa13.81□□□□□ -0.2
UPF3A-204ENST00000475218 TTC25Q96NG3 672 aa13.81□□□□□ -0.2
UPF3A-204ENST00000475218 ZNF768Q9H5H4 540 aaKnown RBP13.81□□□□□ -0.2
UPF3A-204ENST00000475218 FAM96AQ9H5X1 160 aa13.81□□□□□ -0.2
UPF3A-204ENST00000475218 ASB8Q9H765 288 aa13.81□□□□□ -0.2
UPF3A-204ENST00000475218 IMPACTQ9P2X3 320 aa13.81□□□□□ -0.2
UPF3A-204ENST00000475218 TMEM184BQ9Y519 407 aaPredicted RBP13.81□□□□□ -0.2
UPF3A-204ENST00000475218 CFAP20Q9Y6A4 193 aaKnown RBP13.81□□□□□ -0.2
UPF3A-204ENST00000475218 DNMT3AQ9Y6K1 912 aaPredicted RBP13.81□□□□□ -0.2
UPF3A-204ENST00000475218 C2orf81A6NN90 581 aa13.81□□□□□ -0.2
UPF3A-204ENST00000475218 MIF4GDA9UHW6 222 aaKnown RBP13.81□□□□□ -0.2
UPF3A-204ENST00000475218 KCNJ13O60928 360 aa13.81□□□□□ -0.2
UPF3A-204ENST00000475218 DLGAP3O95886 979 aa13.81□□□□□ -0.2
UPF3A-204ENST00000475218 PLA2G2AP14555 144 aa13.81□□□□□ -0.2
UPF3A-204ENST00000475218 TMPRSS15P98073 1019 aa13.81□□□□□ -0.2
UPF3A-204ENST00000475218 KIF5AQ12840 1032 aa13.81□□□□□ -0.2
UPF3A-204ENST00000475218 PRPSAP1Q14558 356 aa13.81□□□□□ -0.2
UPF3A-204ENST00000475218 TBR1Q16650 682 aa13.81□□□□□ -0.2
UPF3A-204ENST00000475218 PARP6Q2NL67 630 aa13.81□□□□□ -0.2
UPF3A-204ENST00000475218 BCL7AQ4VC05 210 aa13.81□□□□□ -0.2
UPF3A-204ENST00000475218 CACNA2D3Q8IZS8 1091 aa13.81□□□□□ -0.2
UPF3A-204ENST00000475218 ATG4AQ8WYN0 398 aa13.81□□□□□ -0.2
UPF3A-204ENST00000475218 CXorf40BQ96DE9 158 aa13.81□□□□□ -0.2
UPF3A-204ENST00000475218 INSM2Q96T92 566 aaPredicted RBP13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms