RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-208ENST00000474426 HRH3Q9Y5N1 445 aa3.45□□□□□ -1.86
UBR3-208ENST00000474426 USP27XA6NNY8 438 aa3.45□□□□□ -1.86
UBR3-208ENST00000474426 ERVH48-1M5A8F1 160 aa3.45□□□□□ -1.86
UBR3-208ENST00000474426 MAGEB2O15479 319 aa3.45□□□□□ -1.86
UBR3-208ENST00000474426 RNMTO43148 476 aaKnown RBP3.45□□□□□ -1.86
UBR3-208ENST00000474426 HS6ST1O60243 411 aa3.45□□□□□ -1.86
UBR3-208ENST00000474426 DTNBO60941 627 aa3.45□□□□□ -1.86
UBR3-208ENST00000474426 IFNA6P05013 189 aa3.45□□□□□ -1.86
UBR3-208ENST00000474426 PRF1P14222 555 aa3.45□□□□□ -1.86
UBR3-208ENST00000474426 ELNP15502 786 aa3.45□□□□□ -1.86
UBR3-208ENST00000474426 AGAP20933 346 aa3.45□□□□□ -1.86
UBR3-208ENST00000474426 AKAP5P24588 427 aa3.45□□□□□ -1.86
UBR3-208ENST00000474426 HOXA13P31271 388 aaPredicted RBP3.45□□□□□ -1.86
UBR3-208ENST00000474426 HSPA9P38646 679 aaKnown RBP3.45□□□□□ -1.86
UBR3-208ENST00000474426 BTDP43251 543 aa3.45□□□□□ -1.86
UBR3-208ENST00000474426 KCNC1P48547 511 aa3.45□□□□□ -1.86
UBR3-208ENST00000474426 GPR15P49685 360 aa3.45□□□□□ -1.86
UBR3-208ENST00000474426 CACNA2D1P54289 1103 aa3.45□□□□□ -1.86
UBR3-208ENST00000474426 RPL6Q02878 288 aaKnown RBP3.45□□□□□ -1.86
UBR3-208ENST00000474426 LRRC63Q05C16 580 aa3.45□□□□□ -1.86
UBR3-208ENST00000474426 TEX44Q53QW1 395 aa3.45□□□□□ -1.86
UBR3-208ENST00000474426 EARS2Q5JPH6 523 aaKnown RBP3.45□□□□□ -1.86
UBR3-208ENST00000474426 PRAMEF14Q5SWL7 426 aa3.45□□□□□ -1.86
UBR3-208ENST00000474426 UBAP2Q5T6F2 1119 aaKnown RBP3.45□□□□□ -1.86
UBR3-208ENST00000474426 SLX4IPQ5VYV7 408 aa3.45□□□□□ -1.86
UBR3-208ENST00000474426 ATG9BQ674R7 924 aa3.45□□□□□ -1.86
UBR3-208ENST00000474426 ANKS6Q68DC2 871 aa3.45□□□□□ -1.86
UBR3-208ENST00000474426 TANGO2Q6ICL3 276 aa3.45□□□□□ -1.86
UBR3-208ENST00000474426 RNF207Q6ZRF8 634 aa3.45□□□□□ -1.86
UBR3-208ENST00000474426 LRRC8DQ7L1W4 858 aa3.45□□□□□ -1.86
UBR3-208ENST00000474426 MAEAQ7L5Y9 396 aa3.45□□□□□ -1.86
UBR3-208ENST00000474426 NIPA1Q7RTP0 329 aa3.45□□□□□ -1.86
UBR3-208ENST00000474426 ARMC8Q8IUR7 673 aa3.45□□□□□ -1.86
UBR3-208ENST00000474426 RASGRP3Q8IV61 690 aa3.45□□□□□ -1.86
UBR3-208ENST00000474426 SP8Q8IXZ3 490 aa3.45□□□□□ -1.86
UBR3-208ENST00000474426 IFT20Q8IY31 132 aa3.45□□□□□ -1.86
UBR3-208ENST00000474426 CDK20Q8IZL9 346 aa3.45□□□□□ -1.86
UBR3-208ENST00000474426 SH2D3CQ8N5H7 860 aa3.45□□□□□ -1.86
UBR3-208ENST00000474426 BEND7Q8N7W2 519 aaPredicted RBP3.45□□□□□ -1.86
UBR3-208ENST00000474426 BEST2Q8NFU1 509 aa3.45□□□□□ -1.86
UBR3-208ENST00000474426 TSEN15Q8WW01 171 aaKnown RBP3.45□□□□□ -1.86
UBR3-208ENST00000474426 CPNE4Q96A23 557 aaPredicted RBP3.45□□□□□ -1.86
UBR3-208ENST00000474426 SPSB4Q96A44 273 aa3.45□□□□□ -1.86
UBR3-208ENST00000474426 C14orf79Q96F83 325 aa3.45□□□□□ -1.86
UBR3-208ENST00000474426 PDXPQ96GD0 296 aa3.45□□□□□ -1.86
UBR3-208ENST00000474426 ZFRQ96KR1 1074 aaKnown RBP3.45□□□□□ -1.86
UBR3-208ENST00000474426 ZNF48Q96MX3 618 aaPredicted RBP3.45□□□□□ -1.86
UBR3-208ENST00000474426 KIFC1Q9BW19 673 aa3.45□□□□□ -1.86
UBR3-208ENST00000474426 MRPL4Q9BYD3 311 aaKnown RBP3.45□□□□□ -1.86
UBR3-208ENST00000474426 NAT10Q9H0A0 1025 aaKnown RBP3.45□□□□□ -1.86
UBR3-208ENST00000474426 TP63Q9H3D4 680 aaPredicted RBP3.45□□□□□ -1.86
UBR3-208ENST00000474426 EPB41L1Q9H4G0 881 aa3.45□□□□□ -1.86
UBR3-208ENST00000474426 ARMC7Q9H6L4 198 aa3.45□□□□□ -1.86
UBR3-208ENST00000474426 CHODLQ9H9P2 273 aa3.45□□□□□ -1.86
UBR3-208ENST00000474426 MAGEF1Q9HAY2 307 aa3.45□□□□□ -1.86
UBR3-208ENST00000474426 CHMP1AQ9HD42 196 aaPredicted RBP3.45□□□□□ -1.86
UBR3-208ENST00000474426 PRDM7Q9NQW5 492 aa3.45□□□□□ -1.86
UBR3-208ENST00000474426 TLR8Q9NR97 1041 aaKnown RBP3.45□□□□□ -1.86
UBR3-208ENST00000474426 TREX1Q9NSU2 369 aa3.45□□□□□ -1.86
UBR3-208ENST00000474426 RIC8BQ9NVN3 520 aa3.45□□□□□ -1.86
UBR3-208ENST00000474426 RGS17Q9UGC6 210 aaPredicted RBP3.45□□□□□ -1.86
UBR3-208ENST00000474426 NAGKQ9UJ70 344 aa3.45□□□□□ -1.86
UBR3-208ENST00000474426 UTS2RQ9UKP6 389 aa3.45□□□□□ -1.86
UBR3-208ENST00000474426 ZNRF3Q9ULT6 936 aa3.45□□□□□ -1.86
UBR3-208ENST00000474426 CTTNBP2Q8WZ74 1663 aa3.45□□□□□ -1.86
UBR3-208ENST00000474426 MYH11P35749 1972 aa3.45□□□□□ -1.86
UBR3-208ENST00000474426 ERCC6Q03468 1493 aa3.45□□□□□ -1.86
UBR3-208ENST00000474426 A0A1W2PPC4 97 aa3.44□□□□□ -1.86
UBR3-208ENST00000474426 A0A1W2PQU0 124 aa3.44□□□□□ -1.86
UBR3-208ENST00000474426 TMEM82A0PJX8 343 aa3.44□□□□□ -1.86
UBR3-208ENST00000474426 FAM172BPA6NC97 362 aa3.44□□□□□ -1.86
UBR3-208ENST00000474426 POTEB2H3BUK9 544 aa3.44□□□□□ -1.86
UBR3-208ENST00000474426 CHMP2AO43633 222 aa3.44□□□□□ -1.86
UBR3-208ENST00000474426 KAT7O95251 611 aa3.44□□□□□ -1.86
UBR3-208ENST00000474426 GUSBP08236 651 aa3.44□□□□□ -1.86
UBR3-208ENST00000474426 CCL2P13500 99 aa3.44□□□□□ -1.86
UBR3-208ENST00000474426 XRCC1P18887 633 aaPredicted RBP3.44□□□□□ -1.86
UBR3-208ENST00000474426 ZNF10P21506 573 aaPredicted RBP3.44□□□□□ -1.86
UBR3-208ENST00000474426 PTGS1P23219 599 aa3.44□□□□□ -1.86
UBR3-208ENST00000474426 MC5RP33032 325 aa3.44□□□□□ -1.86
UBR3-208ENST00000474426 SREBF1P36956 1147 aa3.44□□□□□ -1.86
UBR3-208ENST00000474426 ARL1P40616 181 aaPredicted RBP3.44□□□□□ -1.86
UBR3-208ENST00000474426 VAV2P52735 878 aa3.44□□□□□ -1.86
UBR3-208ENST00000474426 PSME3P61289 254 aa3.44□□□□□ -1.86
UBR3-208ENST00000474426 AP1S1P61966 158 aa3.44□□□□□ -1.86
UBR3-208ENST00000474426 PTSQ03393 145 aa3.44□□□□□ -1.86
UBR3-208ENST00000474426 EN1Q05925 392 aaPredicted RBP3.44□□□□□ -1.86
UBR3-208ENST00000474426 DHX9Q08211 1270 aaKnown RBP3.44□□□□□ -1.86
UBR3-208ENST00000474426 TARDBPQ13148 414 aaKnown RBP eCLIP3.44□□□□□ -1.86
UBR3-208ENST00000474426 RPS6KA1Q15418 735 aa3.44□□□□□ -1.86
UBR3-208ENST00000474426 ZYXQ15942 572 aaKnown RBP3.44□□□□□ -1.86
UBR3-208ENST00000474426 MPPE1Q53F39 396 aa3.44□□□□□ -1.86
UBR3-208ENST00000474426 TMEM63BQ5T3F8 832 aa3.44□□□□□ -1.86
UBR3-208ENST00000474426 IRAK1BP1Q5VVH5 260 aa3.44□□□□□ -1.86
UBR3-208ENST00000474426 CDPF1Q6NVV7 123 aa3.44□□□□□ -1.86
UBR3-208ENST00000474426 MOXD1Q6UVY6 613 aa3.44□□□□□ -1.86
UBR3-208ENST00000474426 LHFPL3Q86UP9 236 aa3.44□□□□□ -1.86
UBR3-208ENST00000474426 DENND1CQ8IV53 801 aa3.44□□□□□ -1.86
UBR3-208ENST00000474426 WDTC1Q8N5D0 677 aa3.44□□□□□ -1.86
UBR3-208ENST00000474426 FAM89BQ8N5H3 189 aa3.44□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms