RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 ARL5AQ9Y689 179 aa18.44■□□□□ 0.54
CCDC88B-206ENST00000473405 DUSP10Q9Y6W6 482 aa18.44■□□□□ 0.54
CCDC88B-206ENST00000473405 OR2AG2A6NM03 316 aa18.43■□□□□ 0.54
CCDC88B-206ENST00000473405 H7C0C1 242 aa18.43■□□□□ 0.54
CCDC88B-206ENST00000473405 KIF1CO43896 1103 aaKnown RBP18.43■□□□□ 0.54
CCDC88B-206ENST00000473405 NDUFA10O95299 355 aa18.43■□□□□ 0.54
CCDC88B-206ENST00000473405 PRAMEF1O95521 474 aa18.43■□□□□ 0.54
CCDC88B-206ENST00000473405 MAP4P27816 1152 aaKnown RBP18.43■□□□□ 0.54
CCDC88B-206ENST00000473405 PTPN7P35236 360 aa18.43■□□□□ 0.54
CCDC88B-206ENST00000473405 ADRA1AP35348 466 aa18.43■□□□□ 0.54
CCDC88B-206ENST00000473405 ATP5OP48047 213 aa18.43■□□□□ 0.54
CCDC88B-206ENST00000473405 PPP1CAP62136 330 aa18.43■□□□□ 0.54
CCDC88B-206ENST00000473405 SH3BP2P78314 561 aa18.43■□□□□ 0.54
CCDC88B-206ENST00000473405 NFKB2Q00653 900 aa18.43■□□□□ 0.54
CCDC88B-206ENST00000473405 OTUD4Q01804 1114 aaKnown RBP18.43■□□□□ 0.54
CCDC88B-206ENST00000473405 ITGA9Q13797 1035 aa18.43■□□□□ 0.54
CCDC88B-206ENST00000473405 BORAQ6PGQ7 559 aa18.43■□□□□ 0.54
CCDC88B-206ENST00000473405 PRICKLE2Q7Z3G6 844 aa18.43■□□□□ 0.54
CCDC88B-206ENST00000473405 PRSS42Q7Z5A4 293 aa18.43■□□□□ 0.54
CCDC88B-206ENST00000473405 AMZ2Q86W34 360 aa18.43■□□□□ 0.54
CCDC88B-206ENST00000473405 RBM12BQ8IXT5 1001 aaKnown RBP18.43■□□□□ 0.54
CCDC88B-206ENST00000473405 PANX2Q96RD6 677 aa18.43■□□□□ 0.54
CCDC88B-206ENST00000473405 GPN2Q9H9Y4 310 aaPredicted RBP18.43■□□□□ 0.54
CCDC88B-206ENST00000473405 LUC7LQ9NQ29 371 aaKnown RBP18.43■□□□□ 0.54
CCDC88B-206ENST00000473405 EFR3BQ9Y2G0 817 aa18.43■□□□□ 0.54
CCDC88B-206ENST00000473405 ZNF891A8MT65 544 aaPredicted RBP18.42■□□□□ 0.54
CCDC88B-206ENST00000473405 POP7O75817 140 aaKnown RBP18.42■□□□□ 0.54
CCDC88B-206ENST00000473405 ANXA9O76027 345 aa18.42■□□□□ 0.54
CCDC88B-206ENST00000473405 AMD1P17707 334 aa18.42■□□□□ 0.54
CCDC88B-206ENST00000473405 PSMB4P28070 264 aa18.42■□□□□ 0.54
CCDC88B-206ENST00000473405 STAT5AP42229 794 aa18.42■□□□□ 0.54
CCDC88B-206ENST00000473405 HALP42357 657 aa18.42■□□□□ 0.54
CCDC88B-206ENST00000473405 SEPHS1P49903 392 aa18.42■□□□□ 0.54
CCDC88B-206ENST00000473405 GEMP55040 296 aa18.42■□□□□ 0.54
CCDC88B-206ENST00000473405 ABHD18Q0P651 414 aa18.42■□□□□ 0.54
CCDC88B-206ENST00000473405 NFE2L1Q14494 772 aa18.42■□□□□ 0.54
CCDC88B-206ENST00000473405 RANBP10Q6VN20 620 aa18.42■□□□□ 0.54
CCDC88B-206ENST00000473405 ALG3Q92685 438 aa18.42■□□□□ 0.54
CCDC88B-206ENST00000473405 FAM118BQ9BPY3 351 aa18.42■□□□□ 0.54
CCDC88B-206ENST00000473405 OSBPL8Q9BZF1 889 aa18.42■□□□□ 0.54
CCDC88B-206ENST00000473405 GEMIN8Q9NWZ8 242 aaKnown RBP18.42■□□□□ 0.54
CCDC88B-206ENST00000473405 EPHA6Q9UF33 1036 aa18.42■□□□□ 0.54
CCDC88B-206ENST00000473405 IL17BQ9UHF5 180 aa18.42■□□□□ 0.54
CCDC88B-206ENST00000473405 EPN1Q9Y6I3 576 aaPredicted RBP18.42■□□□□ 0.54
CCDC88B-206ENST00000473405 UTP20O75691 2785 aaKnown RBP18.41■□□□□ 0.54
CCDC88B-206ENST00000473405 MACROD2A1Z1Q3 448 aa18.41■□□□□ 0.54
CCDC88B-206ENST00000473405 BTNL10A8MVZ5 291 aa18.41■□□□□ 0.54
CCDC88B-206ENST00000473405 STX7O15400 261 aaKnown RBP18.41■□□□□ 0.54
CCDC88B-206ENST00000473405 NKX2-8O15522 239 aa18.41■□□□□ 0.54
CCDC88B-206ENST00000473405 KCNJ13O60928 360 aa18.41■□□□□ 0.54
CCDC88B-206ENST00000473405 RASSF9O75901 435 aa18.41■□□□□ 0.54
CCDC88B-206ENST00000473405 SFTPCP11686 197 aa18.41■□□□□ 0.54
CCDC88B-206ENST00000473405 ZNF28P17035 718 aa18.41■□□□□ 0.54
CCDC88B-206ENST00000473405 ZNF75DP51815 510 aa18.41■□□□□ 0.54
CCDC88B-206ENST00000473405 FOXM1Q08050 763 aa18.41■□□□□ 0.54
CCDC88B-206ENST00000473405 MSLNQ13421 630 aaPredicted RBP18.41■□□□□ 0.54
CCDC88B-206ENST00000473405 MAP7Q14244 749 aa18.41■□□□□ 0.54
CCDC88B-206ENST00000473405 TAF1AQ15573 450 aaPredicted RBP18.41■□□□□ 0.54
CCDC88B-206ENST00000473405 RPE65Q16518 533 aa18.41■□□□□ 0.54
CCDC88B-206ENST00000473405 ANKRD20A2Q5SQ80 823 aa18.41■□□□□ 0.54
CCDC88B-206ENST00000473405 CCDC181Q5TID7 509 aa18.41■□□□□ 0.54
CCDC88B-206ENST00000473405 ANKRD20A1Q5TYW2 823 aa18.41■□□□□ 0.54
CCDC88B-206ENST00000473405 ANKRD20A3Q5VUR7 823 aa18.41■□□□□ 0.54
CCDC88B-206ENST00000473405 ITPRIPL1Q6GPH6 555 aa18.41■□□□□ 0.54
CCDC88B-206ENST00000473405 TMEM220Q6QAJ8 160 aa18.41■□□□□ 0.54
CCDC88B-206ENST00000473405 RAD9BQ6WBX8 426 aa18.41■□□□□ 0.54
CCDC88B-206ENST00000473405 FAM92BQ6ZTR7 304 aa18.41■□□□□ 0.54
CCDC88B-206ENST00000473405 CDKL3Q8IVW4 592 aaPredicted RBP18.41■□□□□ 0.54
CCDC88B-206ENST00000473405 BEND7Q8N7W2 519 aaPredicted RBP18.41■□□□□ 0.54
CCDC88B-206ENST00000473405 LRRC57Q8N9N7 239 aa18.41■□□□□ 0.54
CCDC88B-206ENST00000473405 NAT14Q8WUY8 206 aa18.41■□□□□ 0.54
CCDC88B-206ENST00000473405 KLHL6Q8WZ60 621 aa18.41■□□□□ 0.54
CCDC88B-206ENST00000473405 KIAA1143Q96AT1 154 aaPredicted RBP18.41■□□□□ 0.54
CCDC88B-206ENST00000473405 RNF31Q96EP0 1072 aa18.41■□□□□ 0.54
CCDC88B-206ENST00000473405 MRFAP1L1Q96HT8 127 aa18.41■□□□□ 0.54
CCDC88B-206ENST00000473405 APOL2Q9BQE5 337 aa18.41■□□□□ 0.54
CCDC88B-206ENST00000473405 ULBP3Q9BZM4 244 aa18.41■□□□□ 0.54
CCDC88B-206ENST00000473405 FAM117AQ9C073 453 aa18.41■□□□□ 0.54
CCDC88B-206ENST00000473405 LACRTQ9GZZ8 138 aa18.41■□□□□ 0.54
CCDC88B-206ENST00000473405 RAB33BQ9H082 229 aa18.41■□□□□ 0.54
CCDC88B-206ENST00000473405 PSMD13Q9UNM6 376 aa18.41■□□□□ 0.54
CCDC88B-206ENST00000473405 KCTD3Q9Y597 815 aa18.41■□□□□ 0.54
CCDC88B-206ENST00000473405 CCDC66A2RUB6 948 aa18.4■□□□□ 0.54
CCDC88B-206ENST00000473405 RBP3P10745 1247 aa18.4■□□□□ 0.54
CCDC88B-206ENST00000473405 LPOP22079 712 aaPredicted RBP18.4■□□□□ 0.54
CCDC88B-206ENST00000473405 CTNNA2P26232 953 aa18.4■□□□□ 0.54
CCDC88B-206ENST00000473405 PBLDP30039 288 aaPredicted RBP18.4■□□□□ 0.54
CCDC88B-206ENST00000473405 AKT1P31749 480 aa18.4■□□□□ 0.54
CCDC88B-206ENST00000473405 POLE2P56282 527 aa18.4■□□□□ 0.54
CCDC88B-206ENST00000473405 EIF3EP60228 445 aaKnown RBP18.4■□□□□ 0.54
CCDC88B-206ENST00000473405 CDC20Q12834 499 aa18.4■□□□□ 0.54
CCDC88B-206ENST00000473405 FNBP1LQ5T0N5 605 aa18.4■□□□□ 0.54
CCDC88B-206ENST00000473405 METRNLQ641Q3 311 aa18.4■□□□□ 0.54
CCDC88B-206ENST00000473405 IRGCQ6NXR0 463 aa18.4■□□□□ 0.54
CCDC88B-206ENST00000473405 AADACL2Q6P093 401 aa18.4■□□□□ 0.54
CCDC88B-206ENST00000473405 DET1Q7L5Y6 550 aa18.4■□□□□ 0.54
CCDC88B-206ENST00000473405 OR4K2Q8NGD2 314 aa18.4■□□□□ 0.54
CCDC88B-206ENST00000473405 ZNF398Q8TD17 642 aa18.4■□□□□ 0.54
CCDC88B-206ENST00000473405 CALR3Q96L12 384 aaKnown RBP18.4■□□□□ 0.54
CCDC88B-206ENST00000473405 OR6C1Q96RD1 312 aa18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms