RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 CHRNA6Q15825 494 aa19.38■□□□□ 0.69
COL9A3-210ENST00000472880 DEFB109BQ30KR1 87 aa19.38■□□□□ 0.69
COL9A3-210ENST00000472880 C16orf46Q6P387 395 aa19.38■□□□□ 0.69
COL9A3-210ENST00000472880 C6orf15Q6UXA7 325 aaPredicted RBP19.38■□□□□ 0.69
COL9A3-210ENST00000472880 RCOR2Q8IZ40 523 aa19.38■□□□□ 0.69
COL9A3-210ENST00000472880 DDHD1Q8NEL9 900 aa19.38■□□□□ 0.69
COL9A3-210ENST00000472880 C9orf43Q8TAL5 461 aaPredicted RBP19.38■□□□□ 0.69
COL9A3-210ENST00000472880 ELMO2Q96JJ3 720 aa19.38■□□□□ 0.69
COL9A3-210ENST00000472880 EPHA6Q9UF33 1036 aa19.38■□□□□ 0.69
COL9A3-210ENST00000472880 TRHDEQ9UKU6 1024 aa19.38■□□□□ 0.69
COL9A3-210ENST00000472880 BUD23O43709 281 aaKnown RBP19.37■□□□□ 0.69
COL9A3-210ENST00000472880 KIF1CO43896 1103 aaKnown RBP19.37■□□□□ 0.69
COL9A3-210ENST00000472880 UGT1A9O60656 530 aa19.37■□□□□ 0.69
COL9A3-210ENST00000472880 POP7O75817 140 aaKnown RBP19.37■□□□□ 0.69
COL9A3-210ENST00000472880 KIAA0754O94854 1291 aa19.37■□□□□ 0.69
COL9A3-210ENST00000472880 UGT1A6P19224 532 aa19.37■□□□□ 0.69
COL9A3-210ENST00000472880 UGT1A1P22309 533 aa19.37■□□□□ 0.69
COL9A3-210ENST00000472880 UGT1A4P22310 534 aa19.37■□□□□ 0.69
COL9A3-210ENST00000472880 PBLDP30039 288 aaPredicted RBP19.37■□□□□ 0.69
COL9A3-210ENST00000472880 AKT1P31749 480 aa19.37■□□□□ 0.69
COL9A3-210ENST00000472880 DLSTP36957 453 aa19.37■□□□□ 0.69
COL9A3-210ENST00000472880 CTSCP53634 463 aa19.37■□□□□ 0.69
COL9A3-210ENST00000472880 CRTC2Q53ET0 693 aaPredicted RBP19.37■□□□□ 0.69
COL9A3-210ENST00000472880 GPRC6AQ5T6X5 926 aa19.37■□□□□ 0.69
COL9A3-210ENST00000472880 KLHL35Q6PF15 583 aa19.37■□□□□ 0.69
COL9A3-210ENST00000472880 RASGEF1AQ8N9B8 481 aa19.37■□□□□ 0.69
COL9A3-210ENST00000472880 GALNT6Q8NCL4 622 aa19.37■□□□□ 0.69
COL9A3-210ENST00000472880 GPR150Q8NGU9 434 aa19.37■□□□□ 0.69
COL9A3-210ENST00000472880 APOBEC4Q8WW27 367 aaKnown RBP19.37■□□□□ 0.69
COL9A3-210ENST00000472880 RAB33BQ9H082 229 aa19.37■□□□□ 0.69
COL9A3-210ENST00000472880 UGT1A7Q9HAW7 530 aa19.37■□□□□ 0.69
COL9A3-210ENST00000472880 UGT1A10Q9HAW8 530 aa19.37■□□□□ 0.69
COL9A3-210ENST00000472880 UGT1A8Q9HAW9 530 aa19.37■□□□□ 0.69
COL9A3-210ENST00000472880 LNPEPQ9UIQ6 1025 aa19.37■□□□□ 0.69
COL9A3-210ENST00000472880 CROTQ9UKG9 612 aa19.37■□□□□ 0.69
COL9A3-210ENST00000472880 PSMD13Q9UNM6 376 aa19.37■□□□□ 0.69
COL9A3-210ENST00000472880 PCDHB3Q9Y5E6 796 aa19.37■□□□□ 0.69
COL9A3-210ENST00000472880 MRPS18BQ9Y676 258 aaKnown RBP19.37■□□□□ 0.69
COL9A3-210ENST00000472880 OR2AG2A6NM03 316 aa19.36■□□□□ 0.69
COL9A3-210ENST00000472880 STX7O15400 261 aaKnown RBP19.36■□□□□ 0.69
COL9A3-210ENST00000472880 ARHGAP6O43182 974 aa19.36■□□□□ 0.69
COL9A3-210ENST00000472880 FECHP22830 423 aa19.36■□□□□ 0.69
COL9A3-210ENST00000472880 MARCKSL1P49006 195 aa19.36■□□□□ 0.69
COL9A3-210ENST00000472880 TBX2Q13207 712 aaPredicted RBP19.36■□□□□ 0.69
COL9A3-210ENST00000472880 SEPT6Q14141 434 aa19.36■□□□□ 0.69
COL9A3-210ENST00000472880 PLCL1Q15111 1095 aa19.36■□□□□ 0.69
COL9A3-210ENST00000472880 ATP1A1-AS1Q5TC04 95 aa19.36■□□□□ 0.69
COL9A3-210ENST00000472880 C11orf63Q6NUN7 778 aa19.36■□□□□ 0.69
COL9A3-210ENST00000472880 PPP1R3BQ86XI6 285 aa19.36■□□□□ 0.69
COL9A3-210ENST00000472880 KLHL6Q8WZ60 621 aa19.36■□□□□ 0.69
COL9A3-210ENST00000472880 FERMT1Q9BQL6 677 aa19.36■□□□□ 0.69
COL9A3-210ENST00000472880 SMOXQ9NWM0 555 aa19.36■□□□□ 0.69
COL9A3-210ENST00000472880 H7C0C1 242 aa19.35■□□□□ 0.69
COL9A3-210ENST00000472880 FGF5P12034 268 aa19.35■□□□□ 0.69
COL9A3-210ENST00000472880 NELFEP18615 380 aaKnown RBP19.35■□□□□ 0.69
COL9A3-210ENST00000472880 MSH3P20585 1137 aa19.35■□□□□ 0.69
COL9A3-210ENST00000472880 ATP5OP48047 213 aa19.35■□□□□ 0.69
COL9A3-210ENST00000472880 GEMP55040 296 aa19.35■□□□□ 0.69
COL9A3-210ENST00000472880 NFE2L1Q14494 772 aa19.35■□□□□ 0.69
COL9A3-210ENST00000472880 RPE65Q16518 533 aa19.35■□□□□ 0.69
COL9A3-210ENST00000472880 LONRF2Q1L5Z9 754 aa19.35■□□□□ 0.69
COL9A3-210ENST00000472880 LARP7Q4G0J3 582 aaKnown RBP eCLIP19.35■□□□□ 0.69
COL9A3-210ENST00000472880 CCDC181Q5TID7 509 aa19.35■□□□□ 0.69
COL9A3-210ENST00000472880 ITPRIPL1Q6GPH6 555 aa19.35■□□□□ 0.69
COL9A3-210ENST00000472880 TMEM220Q6QAJ8 160 aa19.35■□□□□ 0.69
COL9A3-210ENST00000472880 FAM83HQ6ZRV2 1179 aaPredicted RBP19.35■□□□□ 0.69
COL9A3-210ENST00000472880 BBS12Q6ZW61 710 aa19.35■□□□□ 0.69
COL9A3-210ENST00000472880 SIDT2Q8NBJ9 832 aaKnown RBP19.35■□□□□ 0.69
COL9A3-210ENST00000472880 UBXN4Q92575 508 aa19.35■□□□□ 0.69
COL9A3-210ENST00000472880 ZNF514Q96K75 400 aaPredicted RBP19.35■□□□□ 0.69
COL9A3-210ENST00000472880 FICDQ9BVA6 458 aa19.35■□□□□ 0.69
COL9A3-210ENST00000472880 GBA3Q9H227 469 aa19.35■□□□□ 0.69
COL9A3-210ENST00000472880 PDE7BQ9NP56 450 aa19.35■□□□□ 0.69
COL9A3-210ENST00000472880 LUC7LQ9NQ29 371 aaKnown RBP19.35■□□□□ 0.69
COL9A3-210ENST00000472880 IMP3Q9NV31 184 aaKnown RBP19.35■□□□□ 0.69
COL9A3-210ENST00000472880 KCTD3Q9Y597 815 aa19.35■□□□□ 0.69
COL9A3-210ENST00000472880 DNMT3AQ9Y6K1 912 aaPredicted RBP19.35■□□□□ 0.69
COL9A3-210ENST00000472880 BSNQ9UPA5 3926 aa19.34■□□□□ 0.69
COL9A3-210ENST00000472880 MACROD2A1Z1Q3 448 aa19.34■□□□□ 0.69
COL9A3-210ENST00000472880 APOC4-APOC2K7ER74 178 aa19.34■□□□□ 0.69
COL9A3-210ENST00000472880 GAPDHSO14556 408 aaPredicted RBP19.34■□□□□ 0.69
COL9A3-210ENST00000472880 SPAG6O75602 509 aa19.34■□□□□ 0.69
COL9A3-210ENST00000472880 ANXA9O76027 345 aa19.34■□□□□ 0.69
COL9A3-210ENST00000472880 PRAMEF1O95521 474 aa19.34■□□□□ 0.69
COL9A3-210ENST00000472880 APOC2P02655 101 aa19.34■□□□□ 0.69
COL9A3-210ENST00000472880 MT-ND3P03897 115 aa19.34■□□□□ 0.69
COL9A3-210ENST00000472880 CCNYL3P0C7X3 344 aa19.34■□□□□ 0.69
COL9A3-210ENST00000472880 F8A1P23610 371 aa19.34■□□□□ 0.69
COL9A3-210ENST00000472880 PPP1CAP62136 330 aa19.34■□□□□ 0.69
COL9A3-210ENST00000472880 XRCC4Q13426 336 aa19.34■□□□□ 0.69
COL9A3-210ENST00000472880 TUBB3Q13509 450 aa19.34■□□□□ 0.69
COL9A3-210ENST00000472880 SPA17Q15506 151 aa19.34■□□□□ 0.69
COL9A3-210ENST00000472880 SKIDA1Q1XH10 827 aa19.34■□□□□ 0.69
COL9A3-210ENST00000472880 FNBP1LQ5T0N5 605 aa19.34■□□□□ 0.69
COL9A3-210ENST00000472880 DAAM2Q86T65 1068 aa19.34■□□□□ 0.69
COL9A3-210ENST00000472880 HEMGNQ9BXL5 484 aa19.34■□□□□ 0.69
COL9A3-210ENST00000472880 EPN3Q9H201 632 aa19.34■□□□□ 0.69
COL9A3-210ENST00000472880 ZNF71Q9NQZ8 489 aaPredicted RBP19.34■□□□□ 0.69
COL9A3-210ENST00000472880 ANAPC2Q9UJX6 822 aa19.34■□□□□ 0.69
COL9A3-210ENST00000472880 KCND3Q9UK17 655 aa19.34■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms