RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 DNAJA1P31689 397 aaKnown RBP13.18□□□□□ -0.3
COL6A3-209ENST00000472056 CMPK2Q5EBM0 449 aa13.18□□□□□ -0.3
COL6A3-209ENST00000472056 INTS6LQ5JSJ4 861 aaKnown RBP13.18□□□□□ -0.3
COL6A3-209ENST00000472056 CFAP206Q8IYR0 622 aa13.18□□□□□ -0.3
COL6A3-209ENST00000472056 TTLQ8NG68 377 aa13.18□□□□□ -0.3
COL6A3-209ENST00000472056 USP29Q9HBJ7 922 aa13.18□□□□□ -0.3
COL6A3-209ENST00000472056 NUDT15Q9NV35 164 aa13.18□□□□□ -0.3
COL6A3-209ENST00000472056 DUOX1Q9NRD9 1551 aa13.18□□□□□ -0.3
COL6A3-209ENST00000472056 PCDHGA12O60330 932 aa13.18□□□□□ -0.3
COL6A3-209ENST00000472056 AGAP2Q99490 1192 aa13.18□□□□□ -0.3
COL6A3-209ENST00000472056 POP1Q99575 1024 aaKnown RBP13.18□□□□□ -0.3
COL6A3-209ENST00000472056 UBR1Q8IWV7 1749 aa13.18□□□□□ -0.3
COL6A3-209ENST00000472056 GRIA2P42262 883 aa13.18□□□□□ -0.3
COL6A3-209ENST00000472056 RAB5BP61020 215 aa13.18□□□□□ -0.3
COL6A3-209ENST00000472056 FBXL19Q6PCT2 694 aa13.18□□□□□ -0.3
COL6A3-209ENST00000472056 TRNT1Q96Q11 434 aaKnown RBP13.18□□□□□ -0.3
COL6A3-209ENST00000472056 GFM1Q96RP9 751 aaKnown RBP13.18□□□□□ -0.3
COL6A3-209ENST00000472056 GBA3Q9H227 469 aa13.18□□□□□ -0.3
COL6A3-209ENST00000472056 PRDM5Q9NQX1 630 aaPredicted RBP13.18□□□□□ -0.3
COL6A3-209ENST00000472056 C3P01024 1663 aa13.18□□□□□ -0.3
COL6A3-209ENST00000472056 FAM189A1O60320 539 aa13.17□□□□□ -0.3
COL6A3-209ENST00000472056 ATG13O75143 517 aa13.17□□□□□ -0.3
COL6A3-209ENST00000472056 PCDH8O95206 1070 aa13.17□□□□□ -0.3
COL6A3-209ENST00000472056 PBLDP30039 288 aaPredicted RBP13.17□□□□□ -0.3
COL6A3-209ENST00000472056 AQP4P55087 323 aa13.17□□□□□ -0.3
COL6A3-209ENST00000472056 SYT16Q17RD7 645 aa13.17□□□□□ -0.3
COL6A3-209ENST00000472056 BORAQ6PGQ7 559 aa13.17□□□□□ -0.3
COL6A3-209ENST00000472056 KIF18BQ86Y91 864 aa13.17□□□□□ -0.3
COL6A3-209ENST00000472056 FAM136AQ96C01 138 aa13.17□□□□□ -0.3
COL6A3-209ENST00000472056 USP20Q9Y2K6 914 aa13.17□□□□□ -0.3
COL6A3-209ENST00000472056 KLF11O14901 512 aa13.17□□□□□ -0.3
COL6A3-209ENST00000472056 LAMP2P13473 410 aa13.17□□□□□ -0.3
COL6A3-209ENST00000472056 PEX2P28328 305 aa13.17□□□□□ -0.3
COL6A3-209ENST00000472056 MERTKQ12866 999 aa13.17□□□□□ -0.3
COL6A3-209ENST00000472056 TIGD2Q4W5G0 525 aa13.17□□□□□ -0.3
COL6A3-209ENST00000472056 QTRT2Q9H974 415 aaKnown RBP13.17□□□□□ -0.3
COL6A3-209ENST00000472056 MYNNQ9NPC7 610 aa13.17□□□□□ -0.3
COL6A3-209ENST00000472056 PEX11AO75192 247 aa13.17□□□□□ -0.3
COL6A3-209ENST00000472056 CD247P20963 164 aa13.17□□□□□ -0.3
COL6A3-209ENST00000472056 HTR1BP28222 390 aa13.17□□□□□ -0.3
COL6A3-209ENST00000472056 DEFA5Q01523 94 aa13.17□□□□□ -0.3
COL6A3-209ENST00000472056 WSCD2Q2TBF2 565 aa13.17□□□□□ -0.3
COL6A3-209ENST00000472056 HJURPQ8NCD3 748 aaPredicted RBP13.17□□□□□ -0.3
COL6A3-209ENST00000472056 SLC2A14Q8TDB8 520 aa13.17□□□□□ -0.3
COL6A3-209ENST00000472056 PFDN5Q99471 154 aa13.17□□□□□ -0.3
COL6A3-209ENST00000472056 CUEDC1Q9NWM3 386 aaPredicted RBP13.17□□□□□ -0.3
COL6A3-209ENST00000472056 SH3D21A4FU49 640 aa13.17□□□□□ -0.3
COL6A3-209ENST00000472056 I3L521 148 aa13.17□□□□□ -0.3
COL6A3-209ENST00000472056 STK16O75716 305 aa13.17□□□□□ -0.3
COL6A3-209ENST00000472056 AP2A1O95782 977 aa13.17□□□□□ -0.3
COL6A3-209ENST00000472056 CXCL8P10145 99 aa13.17□□□□□ -0.3
COL6A3-209ENST00000472056 SYVN1Q86TM6 617 aa13.17□□□□□ -0.3
COL6A3-209ENST00000472056 KLHL36Q8N4N3 616 aa13.17□□□□□ -0.3
COL6A3-209ENST00000472056 C12orf43Q96C57 262 aaKnown RBP13.17□□□□□ -0.3
COL6A3-209ENST00000472056 NPAS2Q99743 824 aa13.17□□□□□ -0.3
COL6A3-209ENST00000472056 TRIM36Q9NQ86 728 aa13.17□□□□□ -0.3
COL6A3-209ENST00000472056 RPS2P15880 293 aaKnown RBP13.17□□□□□ -0.3
COL6A3-209ENST00000472056 CAP2P40123 477 aa13.17□□□□□ -0.3
COL6A3-209ENST00000472056 THPOP40225 353 aa13.17□□□□□ -0.3
COL6A3-209ENST00000472056 FAM46CQ5VWP2 391 aa13.17□□□□□ -0.3
COL6A3-209ENST00000472056 EGFL7Q9UHF1 273 aa13.17□□□□□ -0.3
COL6A3-209ENST00000472056 GTF2IRD1Q9UHL9 959 aa13.17□□□□□ -0.3
COL6A3-209ENST00000472056 PLEKHA6Q9Y2H5 1048 aa13.17□□□□□ -0.3
COL6A3-209ENST00000472056 ARHGEF17Q96PE2 2063 aaPredicted RBP13.17□□□□□ -0.3
COL6A3-209ENST00000472056 KIDINS220Q9ULH0 1771 aa13.17□□□□□ -0.3
COL6A3-209ENST00000472056 FAM234BA2RU67 622 aa13.17□□□□□ -0.3
COL6A3-209ENST00000472056 H0YAE9 185 aa13.17□□□□□ -0.3
COL6A3-209ENST00000472056 TLX3O43711 291 aaPredicted RBP13.17□□□□□ -0.3
COL6A3-209ENST00000472056 FKBP1AP62942 108 aaKnown RBP13.17□□□□□ -0.3
COL6A3-209ENST00000472056 MIIPQ5JXC2 388 aa13.17□□□□□ -0.3
COL6A3-209ENST00000472056 CHERPQ8IWX8 916 aaKnown RBP13.17□□□□□ -0.3
COL6A3-209ENST00000472056 STOML3Q8TAV4 291 aa13.17□□□□□ -0.3
COL6A3-209ENST00000472056 ARL8BQ9NVJ2 186 aa13.17□□□□□ -0.3
COL6A3-209ENST00000472056 KLHL33A6NCF5 533 aa13.17□□□□□ -0.3
COL6A3-209ENST00000472056 ZNF701M0R085 212 aaPredicted RBP13.17□□□□□ -0.3
COL6A3-209ENST00000472056 LIMK2P53671 638 aa13.17□□□□□ -0.3
COL6A3-209ENST00000472056 PRAMEF17Q5VTA0 474 aa13.17□□□□□ -0.3
COL6A3-209ENST00000472056 LINGO1Q96FE5 620 aa13.17□□□□□ -0.3
COL6A3-209ENST00000472056 BRD9Q9H8M2 597 aa13.17□□□□□ -0.3
COL6A3-209ENST00000472056 PCDHGB5Q9Y5G0 923 aa13.17□□□□□ -0.3
COL6A3-209ENST00000472056 SEC16AO15027 2179 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 ARL6IP5O75915 188 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 HSD17B2P37059 387 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 NRIP1P48552 1158 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 PGM5Q15124 567 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 LRRC55Q6ZSA7 311 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 PLEKHO2Q8TD55 490 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 GEMIN6Q8WXD5 167 aaKnown RBP13.16□□□□□ -0.3
COL6A3-209ENST00000472056 TCEAL4Q96EI5 215 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 SLIT3O75094 1523 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 PRR36Q9H6K5 1346 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 SCN9AQ15858 1988 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 M0R233 179 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 NME6O75414 186 aaPredicted RBP13.16□□□□□ -0.3
COL6A3-209ENST00000472056 LINGO3P0C6S8 592 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 GJA1P17302 382 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 C17orf64Q86WR6 236 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 OXR1Q8N573 874 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 SMG8Q8ND04 991 aaKnown RBP13.16□□□□□ -0.3
COL6A3-209ENST00000472056 IFT27Q9BW83 186 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms