RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 CD84Q9UIB8 345 aa11.77□□□□□ -0.53
SQSTM1-206ENST00000466342 GPR34Q9UPC5 381 aa11.77□□□□□ -0.53
SQSTM1-206ENST00000466342 CAPN5O15484 640 aaPredicted RBP11.76□□□□□ -0.53
SQSTM1-206ENST00000466342 RNF224P0DH78 156 aa11.76□□□□□ -0.53
SQSTM1-206ENST00000466342 MYCLP1P12525 358 aaPredicted RBP11.76□□□□□ -0.53
SQSTM1-206ENST00000466342 VPS41P49754 854 aa11.76□□□□□ -0.53
SQSTM1-206ENST00000466342 DCDC1P59894 354 aa11.76□□□□□ -0.53
SQSTM1-206ENST00000466342 GPS1Q13098 491 aa11.76□□□□□ -0.53
SQSTM1-206ENST00000466342 PPP1R7Q15435 360 aa11.76□□□□□ -0.53
SQSTM1-206ENST00000466342 TAF1AQ15573 450 aaPredicted RBP11.76□□□□□ -0.53
SQSTM1-206ENST00000466342 KCTD19Q17RG1 926 aaPredicted RBP11.76□□□□□ -0.53
SQSTM1-206ENST00000466342 HENMT1Q5T8I9 393 aaKnown RBP11.76□□□□□ -0.53
SQSTM1-206ENST00000466342 RAET1GQ6H3X3 334 aa11.76□□□□□ -0.53
SQSTM1-206ENST00000466342 PPP1R21Q6ZMI0 780 aa11.76□□□□□ -0.53
SQSTM1-206ENST00000466342 TAF8Q7Z7C8 310 aa11.76□□□□□ -0.53
SQSTM1-206ENST00000466342 HEATR4Q86WZ0 1026 aa11.76□□□□□ -0.53
SQSTM1-206ENST00000466342 KLHL7Q8IXQ5 586 aa11.76□□□□□ -0.53
SQSTM1-206ENST00000466342 PELI3Q8N2H9 469 aa11.76□□□□□ -0.53
SQSTM1-206ENST00000466342 TEX19Q8NA77 164 aa11.76□□□□□ -0.53
SQSTM1-206ENST00000466342 KYQ8NBH2 561 aa11.76□□□□□ -0.53
SQSTM1-206ENST00000466342 GPR156Q8NFN8 814 aa11.76□□□□□ -0.53
SQSTM1-206ENST00000466342 APOBEC4Q8WW27 367 aaKnown RBP11.76□□□□□ -0.53
SQSTM1-206ENST00000466342 ZNF592Q92610 1267 aa11.76□□□□□ -0.53
SQSTM1-206ENST00000466342 SCAMP4Q969E2 229 aa11.76□□□□□ -0.53
SQSTM1-206ENST00000466342 AP2M1Q96CW1 435 aa11.76□□□□□ -0.53
SQSTM1-206ENST00000466342 PDXPQ96GD0 296 aa11.76□□□□□ -0.53
SQSTM1-206ENST00000466342 FGF22Q9HCT0 170 aa11.76□□□□□ -0.53
SQSTM1-206ENST00000466342 RAD18Q9NS91 495 aa11.76□□□□□ -0.53
SQSTM1-206ENST00000466342 IL17CQ9P0M4 197 aa11.76□□□□□ -0.53
SQSTM1-206ENST00000466342 SIRPGQ9P1W8 387 aa11.76□□□□□ -0.53
SQSTM1-206ENST00000466342 NFKBIL1Q9UBC1 381 aaPredicted RBP11.76□□□□□ -0.53
SQSTM1-206ENST00000466342 RNF215Q9Y6U7 377 aa11.76□□□□□ -0.53
SQSTM1-206ENST00000466342 OTOGQ6ZRI0 2925 aa11.76□□□□□ -0.53
SQSTM1-206ENST00000466342 PRSS38A1L453 326 aa11.75□□□□□ -0.53
SQSTM1-206ENST00000466342 NKX2-8O15522 239 aa11.75□□□□□ -0.53
SQSTM1-206ENST00000466342 URI1O94763 535 aaPredicted RBP11.75□□□□□ -0.53
SQSTM1-206ENST00000466342 SOD1P00441 154 aa11.75□□□□□ -0.53
SQSTM1-206ENST00000466342 PYGLP06737 847 aa11.75□□□□□ -0.53
SQSTM1-206ENST00000466342 BPIP17213 487 aa11.75□□□□□ -0.53
SQSTM1-206ENST00000466342 TPSB2P20231 275 aa11.75□□□□□ -0.53
SQSTM1-206ENST00000466342 UGT1A3P35503 534 aa11.75□□□□□ -0.53
SQSTM1-206ENST00000466342 PTGIRP43119 386 aa11.75□□□□□ -0.53
SQSTM1-206ENST00000466342 GPR1P46091 355 aa11.75□□□□□ -0.53
SQSTM1-206ENST00000466342 ARSDP51689 593 aa11.75□□□□□ -0.53
SQSTM1-206ENST00000466342 CDK16Q00536 496 aa11.75□□□□□ -0.53
SQSTM1-206ENST00000466342 CKAP4Q07065 602 aaKnown RBP11.75□□□□□ -0.53
SQSTM1-206ENST00000466342 CDH17Q12864 832 aa11.75□□□□□ -0.53
SQSTM1-206ENST00000466342 PTK6Q13882 451 aa11.75□□□□□ -0.53
SQSTM1-206ENST00000466342 SEPT6Q14141 434 aa11.75□□□□□ -0.53
SQSTM1-206ENST00000466342 TPSAB1Q15661 275 aa11.75□□□□□ -0.53
SQSTM1-206ENST00000466342 KCTD16Q68DU8 428 aa11.75□□□□□ -0.53
SQSTM1-206ENST00000466342 CCNJLQ8IV13 435 aa11.75□□□□□ -0.53
SQSTM1-206ENST00000466342 SLITRK4Q8IW52 837 aa11.75□□□□□ -0.53
SQSTM1-206ENST00000466342 GPR26Q8NDV2 337 aa11.75□□□□□ -0.53
SQSTM1-206ENST00000466342 FAM46DQ8NEK8 389 aa11.75□□□□□ -0.53
SQSTM1-206ENST00000466342 SPATA4Q8NEY3 305 aa11.75□□□□□ -0.53
SQSTM1-206ENST00000466342 OR52K1Q8NGK4 314 aa11.75□□□□□ -0.53
SQSTM1-206ENST00000466342 BRSK1Q8TDC3 778 aa11.75□□□□□ -0.53
SQSTM1-206ENST00000466342 SLC45A3Q96JT2 553 aa11.75□□□□□ -0.53
SQSTM1-206ENST00000466342 PLEKHG4BQ96PX9 1271 aa11.75□□□□□ -0.53
SQSTM1-206ENST00000466342 TAAR9Q96RI9 348 aa11.75□□□□□ -0.53
SQSTM1-206ENST00000466342 RIOK2Q9BVS4 552 aaKnown RBP11.75□□□□□ -0.53
SQSTM1-206ENST00000466342 TMEM168Q9H0V1 697 aa11.75□□□□□ -0.53
SQSTM1-206ENST00000466342 FAM83DQ9H4H8 585 aa11.75□□□□□ -0.53
SQSTM1-206ENST00000466342 CYP4F12Q9HCS2 524 aa11.75□□□□□ -0.53
SQSTM1-206ENST00000466342 MRPL40Q9NQ50 206 aaKnown RBP11.75□□□□□ -0.53
SQSTM1-206ENST00000466342 CASS4Q9NQ75 786 aa11.75□□□□□ -0.53
SQSTM1-206ENST00000466342 TRNAU1APQ9NX07 287 aaKnown RBP11.75□□□□□ -0.53
SQSTM1-206ENST00000466342 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11.75□□□□□ -0.53
SQSTM1-206ENST00000466342 AKAP7Q9P0M2 348 aaPredicted RBP11.75□□□□□ -0.53
SQSTM1-206ENST00000466342 MOSPD1Q9UJG1 213 aa11.75□□□□□ -0.53
SQSTM1-206ENST00000466342 CDC23Q9UJX2 597 aa11.75□□□□□ -0.53
SQSTM1-206ENST00000466342 APPL1Q9UKG1 709 aa11.75□□□□□ -0.53
SQSTM1-206ENST00000466342 TP53TG5Q9Y2B4 290 aa11.75□□□□□ -0.53
SQSTM1-206ENST00000466342 PKP3Q9Y446 797 aa11.75□□□□□ -0.53
SQSTM1-206ENST00000466342 ARL5AQ9Y689 179 aa11.75□□□□□ -0.53
SQSTM1-206ENST00000466342 ARHGEF17Q96PE2 2063 aaPredicted RBP11.75□□□□□ -0.53
SQSTM1-206ENST00000466342 CSMD1Q96PZ7 3565 aa11.75□□□□□ -0.53
SQSTM1-206ENST00000466342 SHANK1Q9Y566 2161 aa11.75□□□□□ -0.53
SQSTM1-206ENST00000466342 C2orf81A6NN90 581 aa11.74□□□□□ -0.53
SQSTM1-206ENST00000466342 CRTAMO95727 393 aa11.74□□□□□ -0.53
SQSTM1-206ENST00000466342 CEACAM5P06731 702 aa11.74□□□□□ -0.53
SQSTM1-206ENST00000466342 PNLIPP16233 465 aa11.74□□□□□ -0.53
SQSTM1-206ENST00000466342 GLB1P16278 677 aa11.74□□□□□ -0.53
SQSTM1-206ENST00000466342 TPH1P17752 444 aa11.74□□□□□ -0.53
SQSTM1-206ENST00000466342 LPOP22079 712 aaPredicted RBP11.74□□□□□ -0.53
SQSTM1-206ENST00000466342 GRIA1P42261 906 aa11.74□□□□□ -0.53
SQSTM1-206ENST00000466342 MAGEA6P43360 314 aa11.74□□□□□ -0.53
SQSTM1-206ENST00000466342 CDK3Q00526 305 aa11.74□□□□□ -0.53
SQSTM1-206ENST00000466342 PDE1BQ01064 536 aa11.74□□□□□ -0.53
SQSTM1-206ENST00000466342 DR1Q01658 176 aa11.74□□□□□ -0.53
SQSTM1-206ENST00000466342 DHX34Q14147 1143 aaKnown RBP11.74□□□□□ -0.53
SQSTM1-206ENST00000466342 KCNJ11Q14654 390 aa11.74□□□□□ -0.53
SQSTM1-206ENST00000466342 C16orf72Q14CZ0 275 aa11.74□□□□□ -0.53
SQSTM1-206ENST00000466342 PHF19Q5T6S3 580 aa11.74□□□□□ -0.53
SQSTM1-206ENST00000466342 ZDHHC20Q5W0Z9 365 aa11.74□□□□□ -0.53
SQSTM1-206ENST00000466342 ALS2CLQ60I27 953 aa11.74□□□□□ -0.53
SQSTM1-206ENST00000466342 ADAMTSL4Q6UY14 1074 aa11.74□□□□□ -0.53
SQSTM1-206ENST00000466342 SYDE1Q6ZW31 735 aaPredicted RBP11.74□□□□□ -0.53
SQSTM1-206ENST00000466342 ZNF572Q7Z3I7 529 aaPredicted RBP11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms