RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 SEPHS1P49903 392 aa12.29□□□□□ -0.44
HDAC4-208ENST00000463007 VBP1P61758 197 aa12.29□□□□□ -0.44
HDAC4-208ENST00000463007 OCA2Q04671 838 aa12.29□□□□□ -0.44
HDAC4-208ENST00000463007 SIRPB2Q5JXA9 342 aa12.29□□□□□ -0.44
HDAC4-208ENST00000463007 BROXQ5VW32 411 aa12.29□□□□□ -0.44
HDAC4-208ENST00000463007 DSG4Q86SJ6 1040 aa12.29□□□□□ -0.44
HDAC4-208ENST00000463007 FAM126BQ8IXS8 530 aa12.29□□□□□ -0.44
HDAC4-208ENST00000463007 COLGALT2Q8IYK4 626 aa12.29□□□□□ -0.44
HDAC4-208ENST00000463007 ARL10Q8N8L6 244 aa12.29□□□□□ -0.44
HDAC4-208ENST00000463007 RTL3Q8N8U3 475 aaKnown RBP12.29□□□□□ -0.44
HDAC4-208ENST00000463007 ABHD11Q8NFV4 315 aa12.29□□□□□ -0.44
HDAC4-208ENST00000463007 CALML6Q8TD86 181 aa12.29□□□□□ -0.44
HDAC4-208ENST00000463007 RMDN1Q96DB5 314 aa12.29□□□□□ -0.44
HDAC4-208ENST00000463007 UHRF1Q96T88 793 aaPredicted RBP12.29□□□□□ -0.44
HDAC4-208ENST00000463007 SEMA3CQ99985 751 aa12.29□□□□□ -0.44
HDAC4-208ENST00000463007 HGH1Q9BTY7 390 aa12.29□□□□□ -0.44
HDAC4-208ENST00000463007 WDR70Q9NW82 654 aa12.29□□□□□ -0.44
HDAC4-208ENST00000463007 SARDHQ9UL12 918 aa12.29□□□□□ -0.44
HDAC4-208ENST00000463007 SCML2Q9UQR0 700 aa12.29□□□□□ -0.44
HDAC4-208ENST00000463007 ASPDHA6ND91 283 aa12.29□□□□□ -0.44
HDAC4-208ENST00000463007 CD3EAPO15446 510 aaKnown RBP12.29□□□□□ -0.44
HDAC4-208ENST00000463007 COQ9O75208 318 aa12.29□□□□□ -0.44
HDAC4-208ENST00000463007 CLPXO76031 633 aa12.29□□□□□ -0.44
HDAC4-208ENST00000463007 CD1DP15813 335 aa12.29□□□□□ -0.44
HDAC4-208ENST00000463007 RCVRNP35243 200 aa12.29□□□□□ -0.44
HDAC4-208ENST00000463007 POLR2JP52435 117 aaKnown RBP12.29□□□□□ -0.44
HDAC4-208ENST00000463007 ARSFP54793 590 aa12.29□□□□□ -0.44
HDAC4-208ENST00000463007 FCGRTP55899 365 aa12.29□□□□□ -0.44
HDAC4-208ENST00000463007 ARPP19P56211 112 aa12.29□□□□□ -0.44
HDAC4-208ENST00000463007 IL5RAQ01344 420 aa12.29□□□□□ -0.44
HDAC4-208ENST00000463007 AQP6Q13520 282 aa12.29□□□□□ -0.44
HDAC4-208ENST00000463007 MOGQ16653 247 aa12.29□□□□□ -0.44
HDAC4-208ENST00000463007 ALFQ53S48 1182 aa12.29□□□□□ -0.44
HDAC4-208ENST00000463007 C1QTNF12Q5T7M4 302 aa12.29□□□□□ -0.44
HDAC4-208ENST00000463007 BLOC1S3Q6QNY0 202 aa12.29□□□□□ -0.44
HDAC4-208ENST00000463007 OR52B6Q8NGF0 335 aa12.29□□□□□ -0.44
HDAC4-208ENST00000463007 OR10A6Q8NH74 314 aa12.29□□□□□ -0.44
HDAC4-208ENST00000463007 ZFP90Q8TF47 636 aa12.29□□□□□ -0.44
HDAC4-208ENST00000463007 MTFMTQ96DP5 389 aaKnown RBP12.29□□□□□ -0.44
HDAC4-208ENST00000463007 FEM1CQ96JP0 617 aa12.29□□□□□ -0.44
HDAC4-208ENST00000463007 RHNO1Q9BSD3 238 aa12.29□□□□□ -0.44
HDAC4-208ENST00000463007 MARCH7Q9H992 704 aa12.29□□□□□ -0.44
HDAC4-208ENST00000463007 ARNT2Q9HBZ2 717 aa12.29□□□□□ -0.44
HDAC4-208ENST00000463007 CD274Q9NZQ7 290 aa12.29□□□□□ -0.44
HDAC4-208ENST00000463007 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.29□□□□□ -0.44
HDAC4-208ENST00000463007 EIF2B4Q9UI10 523 aaKnown RBP12.29□□□□□ -0.44
HDAC4-208ENST00000463007 VPS4AQ9UN37 437 aa12.29□□□□□ -0.44
HDAC4-208ENST00000463007 IGLV3-10A0A075B6K4 115 aa12.28□□□□□ -0.44
HDAC4-208ENST00000463007 E9PAM4 449 aa12.28□□□□□ -0.44
HDAC4-208ENST00000463007 M0R3G1 203 aa12.28□□□□□ -0.44
HDAC4-208ENST00000463007 DIRAS1O95057 198 aa12.28□□□□□ -0.44
HDAC4-208ENST00000463007 CST1P01037 141 aa12.28□□□□□ -0.44
HDAC4-208ENST00000463007 FTH1P02794 183 aa12.28□□□□□ -0.44
HDAC4-208ENST00000463007 GSNP06396 782 aa12.28□□□□□ -0.44
HDAC4-208ENST00000463007 CNPP09543 421 aaKnown RBP12.28□□□□□ -0.44
HDAC4-208ENST00000463007 IL12AP29459 219 aa12.28□□□□□ -0.44
HDAC4-208ENST00000463007 FMO3P31513 532 aa12.28□□□□□ -0.44
HDAC4-208ENST00000463007 MAP2K4P45985 399 aa12.28□□□□□ -0.44
HDAC4-208ENST00000463007 GSTM4Q03013 218 aa12.28□□□□□ -0.44
HDAC4-208ENST00000463007 CHRNB3Q05901 458 aa12.28□□□□□ -0.44
HDAC4-208ENST00000463007 TMEM53Q6P2H8 277 aa12.28□□□□□ -0.44
HDAC4-208ENST00000463007 KDELC1Q6UW63 502 aa12.28□□□□□ -0.44
HDAC4-208ENST00000463007 ZDHHC13Q8IUH4 622 aa12.28□□□□□ -0.44
HDAC4-208ENST00000463007 CFAP52Q8N1V2 620 aa12.28□□□□□ -0.44
HDAC4-208ENST00000463007 DTWD1Q8N5C7 304 aa12.28□□□□□ -0.44
HDAC4-208ENST00000463007 EFHBQ8N7U6 833 aa12.28□□□□□ -0.44
HDAC4-208ENST00000463007 PTCD2Q8WV60 388 aaKnown RBP12.28□□□□□ -0.44
HDAC4-208ENST00000463007 AURKBQ96GD4 344 aaPredicted RBP12.28□□□□□ -0.44
HDAC4-208ENST00000463007 POLR3BQ9NW08 1133 aaPredicted RBP12.28□□□□□ -0.44
HDAC4-208ENST00000463007 ABI2Q9NYB9 513 aaPredicted RBP12.28□□□□□ -0.44
HDAC4-208ENST00000463007 SNX5Q9Y5X3 404 aa12.28□□□□□ -0.44
HDAC4-208ENST00000463007 MKI67P46013 3256 aaKnown RBP12.28□□□□□ -0.44
HDAC4-208ENST00000463007 THRBP10828 461 aa12.28□□□□□ -0.44
HDAC4-208ENST00000463007 MTHFD2P13995 350 aa12.28□□□□□ -0.44
HDAC4-208ENST00000463007 HRH2P25021 359 aa12.28□□□□□ -0.44
HDAC4-208ENST00000463007 LEPRP48357 1165 aaKnown RBP12.28□□□□□ -0.44
HDAC4-208ENST00000463007 MLLT6P55198 1093 aaPredicted RBP12.28□□□□□ -0.44
HDAC4-208ENST00000463007 SREBF2Q12772 1141 aa12.28□□□□□ -0.44
HDAC4-208ENST00000463007 BNIP2Q12982 314 aa12.28□□□□□ -0.44
HDAC4-208ENST00000463007 LCN8Q6JVE9 175 aa12.28□□□□□ -0.44
HDAC4-208ENST00000463007 IL27RAQ6UWB1 636 aa12.28□□□□□ -0.44
HDAC4-208ENST00000463007 GALNT10Q86SR1 603 aa12.28□□□□□ -0.44
HDAC4-208ENST00000463007 PHACTR4Q8IZ21 702 aa12.28□□□□□ -0.44
HDAC4-208ENST00000463007 C8orf59Q8N0T1 100 aaPredicted RBP12.28□□□□□ -0.44
HDAC4-208ENST00000463007 UMODL1-AS1Q8N2C9 162 aa12.28□□□□□ -0.44
HDAC4-208ENST00000463007 Q8N9G6 341 aaPredicted RBP12.28□□□□□ -0.44
HDAC4-208ENST00000463007 OR2T11Q8NH01 316 aa12.28□□□□□ -0.44
HDAC4-208ENST00000463007 ZUFSPQ96AP4 578 aa12.28□□□□□ -0.44
HDAC4-208ENST00000463007 GPR21Q99679 349 aa12.28□□□□□ -0.44
HDAC4-208ENST00000463007 FEM1AQ9BSK4 669 aa12.28□□□□□ -0.44
HDAC4-208ENST00000463007 SPON2Q9BUD6 331 aa12.28□□□□□ -0.44
HDAC4-208ENST00000463007 CATSPERBQ9H7T0 1116 aa12.28□□□□□ -0.44
HDAC4-208ENST00000463007 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.28□□□□□ -0.445e-7■■■■□ 25.5
HDAC4-208ENST00000463007 PSME2Q9UL46 239 aa12.28□□□□□ -0.44
HDAC4-208ENST00000463007 TLR6Q9Y2C9 796 aa12.28□□□□□ -0.44
HDAC4-208ENST00000463007 PCDHA9Q9Y5H5 950 aa12.28□□□□□ -0.44
HDAC4-208ENST00000463007 A0A1W2PQH9 124 aa12.28□□□□□ -0.44
HDAC4-208ENST00000463007 TMEM221A6NGB7 291 aa12.28□□□□□ -0.44
HDAC4-208ENST00000463007 A6NL46 340 aa12.28□□□□□ -0.44
HDAC4-208ENST00000463007 MYO1GB0I1T2 1018 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms