RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 MPSTP25325 297 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 ERP29P30040 261 aaKnown RBP6.13□□□□□ -1.43
VPS13D-202ENST00000460333 RFC2P35250 354 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 GLUD2P49448 558 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 PLIN5Q00G26 463 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 RHDQ02161 417 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 FOXM1Q08050 763 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 LRRC74AQ0VAA2 488 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 CNTN1Q12860 1018 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 SPRED3Q2MJR0 410 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 CTC1Q2NKJ3 1217 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 LSM12Q3MHD2 195 aaKnown RBP6.13□□□□□ -1.43
VPS13D-202ENST00000460333 FBXO43Q4G163 708 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 PTRHD1Q6GMV3 140 aaKnown RBP6.13□□□□□ -1.43
VPS13D-202ENST00000460333 FUT10Q6P4F1 479 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 RHBDF2Q6PJF5 856 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 ZNF517Q6ZMY9 492 aaPredicted RBP6.13□□□□□ -1.43
VPS13D-202ENST00000460333 FAM92BQ6ZTR7 304 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 STX12Q86Y82 276 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 PPP3R2Q96LZ3 170 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 RPRD1AQ96P16 312 aaPredicted RBP6.13□□□□□ -1.43
VPS13D-202ENST00000460333 PKP2Q99959 881 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 CCDC106Q9BWC9 280 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 PIF1Q9H611 641 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 MRPL17Q9NRX2 175 aaKnown RBP6.13□□□□□ -1.43
VPS13D-202ENST00000460333 UBP1Q9NZI7 540 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 MARCH2Q9P0N8 246 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 FNIP2Q9P278 1114 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 SAMD4AQ9UPU9 718 aaKnown RBP6.13□□□□□ -1.43
VPS13D-202ENST00000460333 CFL2Q9Y281 166 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 CITO14578 2027 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 A0A1B0GVG6 124 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 A0A1W2PPW3 197 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 H0YAE9 185 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 TYROBPO43914 113 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 MPZL2O60487 215 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 JCHAINP01591 159 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 ADH1AP07327 375 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 CSH1P0DML2 217 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 CSH2P0DML3 217 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 NFKB1P19838 968 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 POU1F1P28069 291 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 MTHFRP42898 656 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 MAPK12P53778 367 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 MYBPC1Q00872 1141 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 TAZQ16635 292 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 ZNF470Q6ECI4 717 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 TXNDC11Q6PKC3 985 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 PTAR1Q7Z6K3 402 aaPredicted RBP6.13□□□□□ -1.43
VPS13D-202ENST00000460333 CDYL2Q8N8U2 506 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 NAT8LQ8N9F0 302 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 PGLYRP2Q96PD5 576 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 ERMAPQ96PL5 475 aaPredicted RBP6.13□□□□□ -1.43
VPS13D-202ENST00000460333 ZIC5Q96T25 663 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 CGREF1Q99674 301 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 TBL1YQ9BQ87 522 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 HEPHQ9BQS7 1158 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 CFHR5Q9BXR6 569 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 MMP27Q9H306 513 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 EPB41L4BQ9H329 900 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 RABL2AQ9UBK7 228 aaPredicted RBP6.13□□□□□ -1.43
VPS13D-202ENST00000460333 PCDHGA4Q9Y5G9 962 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 KCNU1A8MYU2 1149 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 SCELO95171 688 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 CRYZL1O95825 349 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 CKMP06732 381 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 IGFBP5P24593 272 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 DNAJB1P25685 340 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 THOP1P52888 689 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 GBE1Q04446 702 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 DAG1Q14118 895 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 FASTKD3Q14CZ7 662 aaKnown RBP6.13□□□□□ -1.43
VPS13D-202ENST00000460333 TLR1Q15399 786 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 ZSWIM7Q19AV6 140 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 XKR5Q6UX68 686 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 MIB1Q86YT6 1006 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 GOLM1Q8NBJ4 401 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 TMIEQ8NEW7 156 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 C9orf43Q8TAL5 461 aaPredicted RBP6.13□□□□□ -1.43
VPS13D-202ENST00000460333 P2RY11Q96G91 374 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 FEM1CQ96JP0 617 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 PIGUQ9H490 435 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 RHOJQ9H4E5 214 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 GSAPA4D1B5 854 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 FOXO6A8MYZ6 492 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 HCRTO43612 131 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 USP12O75317 370 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 ENDOD1O94919 500 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 PGRP06401 933 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 HMBSP08397 361 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 GSTT2P0CG29 244 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 GSTT2BP0CG30 244 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 CHRM3P20309 590 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 S100A3P33764 101 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 GRIA2P42262 883 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 CXCR3P49682 368 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 ZNF33AQ06730 810 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 PAFAH1B3Q15102 231 aaKnown RBP6.13□□□□□ -1.43
VPS13D-202ENST00000460333 PCSK7Q16549 785 aa6.13□□□□□ -1.43
VPS13D-202ENST00000460333 GARNL3Q5VVW2 1013 aa6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms