RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 IYDQ6PHW0 289 aa10.52□□□□□ -0.72
UBR4-208ENST00000459947 TMPRSS7Q7RTY8 843 aa10.52□□□□□ -0.72
UBR4-208ENST00000459947 SFRP1Q8N474 314 aa10.52□□□□□ -0.72
UBR4-208ENST00000459947 OR10G6Q8NH81 332 aa10.52□□□□□ -0.72
UBR4-208ENST00000459947 GSDMBQ8TAX9 411 aa10.52□□□□□ -0.72
UBR4-208ENST00000459947 OSGEPL1Q9H4B0 414 aa10.52□□□□□ -0.72
UBR4-208ENST00000459947 COLEC10Q9Y6Z7 277 aa10.52□□□□□ -0.72
UBR4-208ENST00000459947 PTPRZ1P23471 2315 aaPredicted RBP10.52□□□□□ -0.73
UBR4-208ENST00000459947 UBA6A0AVT1 1052 aaPredicted RBP10.52□□□□□ -0.73
UBR4-208ENST00000459947 PRR19A6NJB7 356 aa10.52□□□□□ -0.73
UBR4-208ENST00000459947 OPA1O60313 960 aa10.52□□□□□ -0.73
UBR4-208ENST00000459947 VIPP01282 170 aa10.52□□□□□ -0.73
UBR4-208ENST00000459947 C2orf54Q08AI8 447 aa10.52□□□□□ -0.73
UBR4-208ENST00000459947 SYTL3Q4VX76 610 aa10.52□□□□□ -0.73
UBR4-208ENST00000459947 CCDC38Q502W7 563 aa10.52□□□□□ -0.73
UBR4-208ENST00000459947 RBM44Q6ZP01 1051 aaKnown RBP10.52□□□□□ -0.73
UBR4-208ENST00000459947 SIGLEC10Q96LC7 697 aa10.52□□□□□ -0.73
UBR4-208ENST00000459947 MVB12BQ9H7P6 319 aa10.52□□□□□ -0.73
UBR4-208ENST00000459947 CHRAC1Q9NRG0 131 aa10.52□□□□□ -0.73
UBR4-208ENST00000459947 ANGPTL2Q9UKU9 493 aa10.52□□□□□ -0.73
UBR4-208ENST00000459947 ASCC3Q8N3C0 2202 aaKnown RBP10.52□□□□□ -0.73
UBR4-208ENST00000459947 CPED1A4D0V7 1026 aa10.52□□□□□ -0.73
UBR4-208ENST00000459947 APOA4P06727 396 aa10.52□□□□□ -0.73
UBR4-208ENST00000459947 SPIDRQ14159 915 aa10.52□□□□□ -0.73
UBR4-208ENST00000459947 TTLL9Q3SXZ7 439 aa10.52□□□□□ -0.73
UBR4-208ENST00000459947 BBS9Q3SYG4 887 aa10.52□□□□□ -0.73
UBR4-208ENST00000459947 RIF1Q5UIP0 2472 aaKnown RBP10.52□□□□□ -0.73
UBR4-208ENST00000459947 DUPD1Q68J44 220 aa10.52□□□□□ -0.73
UBR4-208ENST00000459947 ARL14Q8N4G2 192 aa10.52□□□□□ -0.73
UBR4-208ENST00000459947 CAMK1GQ96NX5 476 aa10.52□□□□□ -0.73
UBR4-208ENST00000459947 TRIM51Q9BSJ1 452 aa10.52□□□□□ -0.73
UBR4-208ENST00000459947 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.52□□□□□ -0.73
UBR4-208ENST00000459947 GVINP1Q7Z2Y8 2422 aa10.51□□□□□ -0.73
UBR4-208ENST00000459947 PLXNB3Q9ULL4 1909 aa10.51□□□□□ -0.73
UBR4-208ENST00000459947 E7ESA3 106 aa10.51□□□□□ -0.73
UBR4-208ENST00000459947 EIF3FO00303 357 aaPredicted RBP10.51□□□□□ -0.73
UBR4-208ENST00000459947 RAD51CO43502 376 aa10.51□□□□□ -0.73
UBR4-208ENST00000459947 ARSDP51689 593 aa10.51□□□□□ -0.73
UBR4-208ENST00000459947 SMAD1Q15797 465 aaKnown RBP10.51□□□□□ -0.73
UBR4-208ENST00000459947 FNBP1LQ5T0N5 605 aa10.51□□□□□ -0.73
UBR4-208ENST00000459947 PTRHD1Q6GMV3 140 aaKnown RBP10.51□□□□□ -0.73
UBR4-208ENST00000459947 UGT3A1Q6NUS8 523 aa10.51□□□□□ -0.73
UBR4-208ENST00000459947 GFM1Q96RP9 751 aaKnown RBP10.51□□□□□ -0.73
UBR4-208ENST00000459947 SUDS3Q9H7L9 328 aaPredicted RBP10.51□□□□□ -0.73
UBR4-208ENST00000459947 KCNK6Q9Y257 313 aa10.51□□□□□ -0.73
UBR4-208ENST00000459947 TCRBV7S3A2A0A539 114 aa10.51□□□□□ -0.73
UBR4-208ENST00000459947 DUX1O43812 170 aa10.51□□□□□ -0.73
UBR4-208ENST00000459947 NMBRP28336 390 aa10.51□□□□□ -0.73
UBR4-208ENST00000459947 NAB1Q13506 487 aa10.51□□□□□ -0.73
UBR4-208ENST00000459947 CHCHD2P9Q5T1J5 151 aaPredicted RBP10.51□□□□□ -0.73
UBR4-208ENST00000459947 METRNLQ641Q3 311 aa10.51□□□□□ -0.73
UBR4-208ENST00000459947 STEAP4Q687X5 459 aa10.51□□□□□ -0.73
UBR4-208ENST00000459947 CARFQ8N187 725 aa10.51□□□□□ -0.73
UBR4-208ENST00000459947 CDKL2Q92772 493 aa10.51□□□□□ -0.73
UBR4-208ENST00000459947 CCDC74AQ96AQ1 378 aa10.51□□□□□ -0.73
UBR4-208ENST00000459947 SLC38A3Q99624 504 aa10.51□□□□□ -0.73
UBR4-208ENST00000459947 LRRN3Q9H3W5 708 aa10.51□□□□□ -0.73
UBR4-208ENST00000459947 EPB41L5Q9HCM4 733 aa10.51□□□□□ -0.73
UBR4-208ENST00000459947 SIRPGQ9P1W8 387 aa10.51□□□□□ -0.73
UBR4-208ENST00000459947 PNMA8BQ9ULN7 279 aaPredicted RBP10.51□□□□□ -0.73
UBR4-208ENST00000459947 MYLKQ15746 1914 aa10.51□□□□□ -0.73
UBR4-208ENST00000459947 EP300Q09472 2414 aaPredicted RBP10.51□□□□□ -0.73
UBR4-208ENST00000459947 A6NCN8 305 aa10.51□□□□□ -0.73
UBR4-208ENST00000459947 MATN2O00339 956 aa10.51□□□□□ -0.73
UBR4-208ENST00000459947 VAPBO95292 243 aa10.51□□□□□ -0.73
UBR4-208ENST00000459947 PTPRCAPQ14761 206 aa10.51□□□□□ -0.73
UBR4-208ENST00000459947 CDCP2Q5VXM1 449 aa10.51□□□□□ -0.73
UBR4-208ENST00000459947 CCDC3Q9BQI4 270 aa10.51□□□□□ -0.73
UBR4-208ENST00000459947 SPATS2LQ9NUQ6 558 aaKnown RBP10.51□□□□□ -0.73
UBR4-208ENST00000459947 LRIT1Q9P2V4 623 aa10.51□□□□□ -0.73
UBR4-208ENST00000459947 LY6G6EA0A0G2JKS1 128 aa10.5□□□□□ -0.73
UBR4-208ENST00000459947 MT-CO3P00414 261 aa10.5□□□□□ -0.73
UBR4-208ENST00000459947 AK4P27144 223 aaPredicted RBP10.5□□□□□ -0.73
UBR4-208ENST00000459947 PLEKHS1Q5SXH7 462 aa10.5□□□□□ -0.73
UBR4-208ENST00000459947 C11orf96Q7Z7L8 435 aa10.5□□□□□ -0.73
UBR4-208ENST00000459947 LSMEM2Q8N112 164 aa10.5□□□□□ -0.73
UBR4-208ENST00000459947 ASZ1Q8WWH4 475 aa10.5□□□□□ -0.73
UBR4-208ENST00000459947 B3GNT4Q9C0J1 378 aa10.5□□□□□ -0.73
UBR4-208ENST00000459947 COG4Q9H9E3 785 aa10.5□□□□□ -0.73
UBR4-208ENST00000459947 ZC3H7BQ9UGR2 993 aaKnown RBP10.5□□□□□ -0.73
UBR4-208ENST00000459947 POLG2Q9UHN1 485 aa10.5□□□□□ -0.73
UBR4-208ENST00000459947 SNX24Q9Y343 169 aa10.5□□□□□ -0.73
UBR4-208ENST00000459947 U3KQA8 63 aa10.5□□□□□ -0.73
UBR4-208ENST00000459947 ZFHX2Q9C0A1 2572 aaPredicted RBP10.5□□□□□ -0.73
UBR4-208ENST00000459947 FANCGO15287 622 aa10.5□□□□□ -0.73
UBR4-208ENST00000459947 RPL21P46778 160 aaKnown RBP10.5□□□□□ -0.73
UBR4-208ENST00000459947 CTSCP53634 463 aa10.5□□□□□ -0.73
UBR4-208ENST00000459947 HHEXQ03014 270 aa10.5□□□□□ -0.73
UBR4-208ENST00000459947 DHX9Q08211 1270 aaKnown RBP10.5□□□□□ -0.73
UBR4-208ENST00000459947 CUL1Q13616 776 aa10.5□□□□□ -0.73
UBR4-208ENST00000459947 KDM7AQ6ZMT4 941 aa10.5□□□□□ -0.73
UBR4-208ENST00000459947 CYS1Q717R9 158 aa10.5□□□□□ -0.73
UBR4-208ENST00000459947 RAB42Q8N4Z0 105 aa10.5□□□□□ -0.73
UBR4-208ENST00000459947 NXPE2Q96DL1 559 aa10.5□□□□□ -0.73
UBR4-208ENST00000459947 AHCYL2Q96HN2 611 aaKnown RBP10.5□□□□□ -0.73
UBR4-208ENST00000459947 C20orf96Q9NUD7 363 aaPredicted RBP10.5□□□□□ -0.73
UBR4-208ENST00000459947 PIH1D1Q9NWS0 290 aaKnown RBP10.5□□□□□ -0.73
UBR4-208ENST00000459947 KCNK4Q9NYG8 393 aa10.5□□□□□ -0.73
UBR4-208ENST00000459947 CPNE7Q9UBL6 633 aa10.5□□□□□ -0.73
UBR4-208ENST00000459947 SLC2A6Q9UGQ3 507 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms