RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 RUNX1T1Q06455 604 aa3.41□□□□□ -1.86
VPS41-207ENST00000439468 KIF5AQ12840 1032 aa3.41□□□□□ -1.86
VPS41-207ENST00000439468 BAATQ14032 418 aaPredicted RBP3.41□□□□□ -1.86
VPS41-207ENST00000439468 LETM2Q2VYF4 491 aa3.41□□□□□ -1.86
VPS41-207ENST00000439468 ERMARDQ5T6L9 678 aa3.41□□□□□ -1.86
VPS41-207ENST00000439468 KRT79Q5XKE5 535 aa3.41□□□□□ -1.86
VPS41-207ENST00000439468 TMEM211Q6ICI0 200 aa3.41□□□□□ -1.86
VPS41-207ENST00000439468 INTS8Q75QN2 995 aaKnown RBP3.41□□□□□ -1.86
VPS41-207ENST00000439468 ZNF534Q76KX8 674 aa3.41□□□□□ -1.86
VPS41-207ENST00000439468 HAUS6Q7Z4H7 955 aa3.41□□□□□ -1.86
VPS41-207ENST00000439468 TMEM219Q86XT9 240 aa3.41□□□□□ -1.86
VPS41-207ENST00000439468 C1orf87Q8N0U7 546 aa3.41□□□□□ -1.86
VPS41-207ENST00000439468 GUF1Q8N442 669 aaKnown RBP3.41□□□□□ -1.86
VPS41-207ENST00000439468 ZNF441Q8N8Z8 693 aa3.41□□□□□ -1.86
VPS41-207ENST00000439468 BBS10Q8TAM1 723 aa3.41□□□□□ -1.86
VPS41-207ENST00000439468 WDR20Q8TBZ3 569 aa3.41□□□□□ -1.86
VPS41-207ENST00000439468 SLC38A5Q8WUX1 472 aa3.41□□□□□ -1.86
VPS41-207ENST00000439468 DNASE2BQ8WZ79 361 aa3.41□□□□□ -1.86
VPS41-207ENST00000439468 LPGAT1Q92604 370 aa3.41□□□□□ -1.86
VPS41-207ENST00000439468 PIGTQ969N2 578 aa3.41□□□□□ -1.86
VPS41-207ENST00000439468 TMEM19Q96HH6 336 aa3.41□□□□□ -1.86
VPS41-207ENST00000439468 IGSF21Q96ID5 467 aa3.41□□□□□ -1.86
VPS41-207ENST00000439468 DGAT2Q96PD7 388 aa3.41□□□□□ -1.86
VPS41-207ENST00000439468 OLFM1Q99784 485 aa3.41□□□□□ -1.86
VPS41-207ENST00000439468 FAM129AQ9BZQ8 928 aa3.41□□□□□ -1.86
VPS41-207ENST00000439468 RTN4RQ9BZR6 473 aa3.41□□□□□ -1.86
VPS41-207ENST00000439468 LRMDAQ9H2I8 198 aa3.41□□□□□ -1.86
VPS41-207ENST00000439468 ST6GALNAC4Q9H4F1 302 aa3.41□□□□□ -1.86
VPS41-207ENST00000439468 PCDH9Q9HC56 1237 aa3.41□□□□□ -1.86
VPS41-207ENST00000439468 CHMP1AQ9HD42 196 aaPredicted RBP3.41□□□□□ -1.86
VPS41-207ENST00000439468 ZCCHC17Q9NP64 241 aaKnown RBP3.41□□□□□ -1.86
VPS41-207ENST00000439468 TRMT1Q9NXH9 659 aaKnown RBP3.41□□□□□ -1.86
VPS41-207ENST00000439468 SMARCAL1Q9NZC9 954 aa3.41□□□□□ -1.86
VPS41-207ENST00000439468 UBA2Q9UBT2 640 aaPredicted RBP3.41□□□□□ -1.86
VPS41-207ENST00000439468 MORF4L1Q9UBU8 362 aa3.41□□□□□ -1.86
VPS41-207ENST00000439468 ZNF148Q9UQR1 794 aa3.41□□□□□ -1.86
VPS41-207ENST00000439468 MAGEB17A8MXT2 336 aa3.4□□□□□ -1.87
VPS41-207ENST00000439468 HNRNPCL2B2RXH8 293 aa3.4□□□□□ -1.87
VPS41-207ENST00000439468 TMEM178BH3BS89 294 aa3.4□□□□□ -1.87
VPS41-207ENST00000439468 TBX10O75333 385 aa3.4□□□□□ -1.87
VPS41-207ENST00000439468 GAGE7O76087 117 aa3.4□□□□□ -1.87
VPS41-207ENST00000439468 PPP1R3DO95685 299 aa3.4□□□□□ -1.87
VPS41-207ENST00000439468 ABCB1P08183 1280 aaPredicted RBP3.4□□□□□ -1.87
VPS41-207ENST00000439468 GAGE12FP0CL80 117 aa3.4□□□□□ -1.87
VPS41-207ENST00000439468 GAGE12GP0CL81 117 aa3.4□□□□□ -1.87
VPS41-207ENST00000439468 GAGE12IP0CL82 117 aa3.4□□□□□ -1.87
VPS41-207ENST00000439468 KCNA5P22460 613 aa3.4□□□□□ -1.87
VPS41-207ENST00000439468 CAPZA2P47755 286 aa3.4□□□□□ -1.87
VPS41-207ENST00000439468 LMAN1P49257 510 aa3.4□□□□□ -1.87
VPS41-207ENST00000439468 PEX5P50542 639 aa3.4□□□□□ -1.87
VPS41-207ENST00000439468 TUBA1BP68363 451 aa3.4□□□□□ -1.87
VPS41-207ENST00000439468 RELQ04864 619 aaPredicted RBP3.4□□□□□ -1.87
VPS41-207ENST00000439468 CALD1Q05682 793 aaKnown RBP3.4□□□□□ -1.87
VPS41-207ENST00000439468 TROAPQ12815 778 aa3.4□□□□□ -1.87
VPS41-207ENST00000439468 GAGE1Q13065 139 aa3.4□□□□□ -1.87
VPS41-207ENST00000439468 GAGE4Q13068 117 aa3.4□□□□□ -1.87
VPS41-207ENST00000439468 IL11RAQ14626 422 aa3.4□□□□□ -1.87
VPS41-207ENST00000439468 MVPQ14764 893 aaKnown RBP3.4□□□□□ -1.87
VPS41-207ENST00000439468 CALCRLQ16602 461 aa3.4□□□□□ -1.87
VPS41-207ENST00000439468 KIF19Q2TAC6 998 aa3.4□□□□□ -1.87
VPS41-207ENST00000439468 C9orf50Q5SZB4 431 aa3.4□□□□□ -1.87
VPS41-207ENST00000439468 STXBP5Q5T5C0 1151 aa3.4□□□□□ -1.87
VPS41-207ENST00000439468 GFRALQ6UXV0 394 aa3.4□□□□□ -1.87
VPS41-207ENST00000439468 CCNI2Q6ZMN8 369 aaPredicted RBP3.4□□□□□ -1.87
VPS41-207ENST00000439468 TPRG1Q6ZUI0 275 aa3.4□□□□□ -1.87
VPS41-207ENST00000439468 CUZD1Q86UP6 607 aa3.4□□□□□ -1.87
VPS41-207ENST00000439468 CEP57Q86XR8 500 aa3.4□□□□□ -1.87
VPS41-207ENST00000439468 EPHX4Q8IUS5 362 aa3.4□□□□□ -1.87
VPS41-207ENST00000439468 MCEMP1Q8IX19 187 aa3.4□□□□□ -1.87
VPS41-207ENST00000439468 ZNF595Q8IYB9 648 aa3.4□□□□□ -1.87
VPS41-207ENST00000439468 PM20D2Q8IYS1 436 aa3.4□□□□□ -1.87
VPS41-207ENST00000439468 SLC5A8Q8N695 610 aa3.4□□□□□ -1.87
VPS41-207ENST00000439468 TDRD5Q8NAT2 981 aaKnown RBP3.4□□□□□ -1.87
VPS41-207ENST00000439468 MCUQ8NE86 351 aa3.4□□□□□ -1.87
VPS41-207ENST00000439468 OR6J1Q8NGC5 347 aa3.4□□□□□ -1.87
VPS41-207ENST00000439468 OR52I2Q8NH67 350 aa3.4□□□□□ -1.87
VPS41-207ENST00000439468 LILRB1Q8NHL6 650 aaPredicted RBP3.4□□□□□ -1.87
VPS41-207ENST00000439468 TEKT4Q8WW24 435 aa3.4□□□□□ -1.87
VPS41-207ENST00000439468 MOAP1Q96BY2 351 aa3.4□□□□□ -1.87
VPS41-207ENST00000439468 ERLEC1Q96DZ1 483 aa3.4□□□□□ -1.87
VPS41-207ENST00000439468 PGAP3Q96FM1 320 aaPredicted RBP3.4□□□□□ -1.87
VPS41-207ENST00000439468 ADGRG7Q96K78 797 aa3.4□□□□□ -1.87
VPS41-207ENST00000439468 PRMT6Q96LA8 375 aaPredicted RBP3.4□□□□□ -1.87
VPS41-207ENST00000439468 ZNF582Q96NG8 517 aaPredicted RBP3.4□□□□□ -1.87
VPS41-207ENST00000439468 QRFPRQ96P65 431 aa3.4□□□□□ -1.87
VPS41-207ENST00000439468 DUX5Q96PT3 197 aa3.4□□□□□ -1.87
VPS41-207ENST00000439468 SPATC1LQ9H0A9 340 aa3.4□□□□□ -1.87
VPS41-207ENST00000439468 TMEM30AQ9NV96 361 aa3.4□□□□□ -1.87
VPS41-207ENST00000439468 PSD3Q9NYI0 1048 aa3.4□□□□□ -1.87
VPS41-207ENST00000439468 HAO2Q9NYQ3 351 aa3.4□□□□□ -1.87
VPS41-207ENST00000439468 GDE1Q9NZC3 331 aa3.4□□□□□ -1.87
VPS41-207ENST00000439468 SIX4Q9UIU6 781 aa3.4□□□□□ -1.87
VPS41-207ENST00000439468 RALYQ9UKM9 306 aaKnown RBP3.4□□□□□ -1.87
VPS41-207ENST00000439468 PPIEQ9UNP9 301 aaKnown RBP3.4□□□□□ -1.87
VPS41-207ENST00000439468 RIMBP3CA6NJZ7 1639 aa3.4□□□□□ -1.87
VPS41-207ENST00000439468 RIMBP3BA6NNM3 1639 aa3.4□□□□□ -1.87
VPS41-207ENST00000439468 RIMBP3Q9UFD9 1639 aa3.4□□□□□ -1.87
VPS41-207ENST00000439468 A0A0B4J293 547 aa3.39□□□□□ -1.87
VPS41-207ENST00000439468 OR2M5A3KFT3 312 aa3.39□□□□□ -1.87
VPS41-207ENST00000439468 GOLGA6L9A6NEM1 432 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms