RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 HERVK_113Q902F9 699 aa17.01■□□□□ 0.31
PTPRF-209ENST00000438120 NUDT4Q9NZJ9 180 aa17.01■□□□□ 0.31
PTPRF-209ENST00000438120 POU2F1P14859 743 aa17.01■□□□□ 0.31
PTPRF-209ENST00000438120 CASP9P55211 416 aa17.01■□□□□ 0.31
PTPRF-209ENST00000438120 LIPEQ05469 1076 aa17.01■□□□□ 0.31
PTPRF-209ENST00000438120 VITQ6UXI7 678 aa17.01■□□□□ 0.31
PTPRF-209ENST00000438120 IQCKQ8N0W5 287 aa17.01■□□□□ 0.31
PTPRF-209ENST00000438120 FAM81AQ8TBF8 368 aa17.01■□□□□ 0.31
PTPRF-209ENST00000438120 S100A14Q9HCY8 104 aa17.01■□□□□ 0.31
PTPRF-209ENST00000438120 PHF11Q9UIL8 331 aa17.01■□□□□ 0.31
PTPRF-209ENST00000438120 WWP2O00308 870 aa17.01■□□□□ 0.31
PTPRF-209ENST00000438120 SYN3O14994 580 aa17.01■□□□□ 0.31
PTPRF-209ENST00000438120 TGDSO95455 350 aa17.01■□□□□ 0.31
PTPRF-209ENST00000438120 POP4O95707 220 aaKnown RBP17.01■□□□□ 0.31
PTPRF-209ENST00000438120 C8AP07357 584 aa17.01■□□□□ 0.31
PTPRF-209ENST00000438120 COL6A2P12110 1019 aa17.01■□□□□ 0.31
PTPRF-209ENST00000438120 NKD2Q969F2 451 aaPredicted RBP17.01■□□□□ 0.31
PTPRF-209ENST00000438120 HEPHQ9BQS7 1158 aa17.01■□□□□ 0.31
PTPRF-209ENST00000438120 KDM4FA0A1W2PPD8 638 aa17.01■□□□□ 0.31
PTPRF-209ENST00000438120 NADKO95544 446 aaPredicted RBP17.01■□□□□ 0.31
PTPRF-209ENST00000438120 IGFBP5P24593 272 aa17.01■□□□□ 0.31
PTPRF-209ENST00000438120 CHRNA4P43681 627 aa17.01■□□□□ 0.31
PTPRF-209ENST00000438120 ASPAP45381 313 aa17.01■□□□□ 0.31
PTPRF-209ENST00000438120 DGKGP49619 791 aa17.01■□□□□ 0.31
PTPRF-209ENST00000438120 LIN54Q6MZP7 749 aa17.01■□□□□ 0.31
PTPRF-209ENST00000438120 BEND5Q7L4P6 421 aa17.01■□□□□ 0.31
PTPRF-209ENST00000438120 ADCY4Q8NFM4 1077 aa17.01■□□□□ 0.31
PTPRF-209ENST00000438120 PTCD2Q8WV60 388 aaKnown RBP17.01■□□□□ 0.31
PTPRF-209ENST00000438120 AUTS2Q8WXX7 1259 aa17.01■□□□□ 0.31
PTPRF-209ENST00000438120 POLR3BQ9NW08 1133 aaPredicted RBP17.01■□□□□ 0.31
PTPRF-209ENST00000438120 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP17.01■□□□□ 0.31
PTPRF-209ENST00000438120 OAS3Q9Y6K5 1087 aaKnown RBP17.01■□□□□ 0.31
PTPRF-209ENST00000438120 FABP3P05413 133 aa17.01■□□□□ 0.31
PTPRF-209ENST00000438120 ZNF433Q8N7K0 673 aaPredicted RBP17.01■□□□□ 0.31
PTPRF-209ENST00000438120 MAGEH1Q9H213 219 aa17.01■□□□□ 0.31
PTPRF-209ENST00000438120 FBXW11Q9UKB1 542 aa17.01■□□□□ 0.31
PTPRF-209ENST00000438120 CPSF4LA6NMK7 179 aaKnown RBP17■□□□□ 0.31
PTPRF-209ENST00000438120 TFECO14948 347 aaPredicted RBP17■□□□□ 0.31
PTPRF-209ENST00000438120 PGRMC2O15173 223 aa17■□□□□ 0.31
PTPRF-209ENST00000438120 LAMP2P13473 410 aa17■□□□□ 0.31
PTPRF-209ENST00000438120 ACAP2Q15057 778 aa17■□□□□ 0.31
PTPRF-209ENST00000438120 DDX59Q5T1V6 619 aaKnown RBP eCLIP17■□□□□ 0.314e-6■□□□□ 10.3
PTPRF-209ENST00000438120 PIK3R6Q5UE93 754 aa17■□□□□ 0.31
PTPRF-209ENST00000438120 OAFQ86UD1 273 aa17■□□□□ 0.31
PTPRF-209ENST00000438120 CPNE8Q86YQ8 564 aa17■□□□□ 0.31
PTPRF-209ENST00000438120 FAM13CQ8NE31 585 aa17■□□□□ 0.31
PTPRF-209ENST00000438120 ALKBH4Q9NXW9 302 aa17■□□□□ 0.31
PTPRF-209ENST00000438120 ELOVL7A1L3X0 281 aa17■□□□□ 0.31
PTPRF-209ENST00000438120 TNFRSF11BO00300 401 aa17■□□□□ 0.31
PTPRF-209ENST00000438120 SAP18O00422 153 aaKnown RBP17■□□□□ 0.31
PTPRF-209ENST00000438120 PIP5K1BO14986 540 aa17■□□□□ 0.31
PTPRF-209ENST00000438120 CMPK1P30085 196 aa17■□□□□ 0.31
PTPRF-209ENST00000438120 POU5F1Q01860 360 aaKnown RBP17■□□□□ 0.31
PTPRF-209ENST00000438120 AAGABQ6PD74 315 aa17■□□□□ 0.31
PTPRF-209ENST00000438120 CERS6Q6ZMG9 384 aa17■□□□□ 0.31
PTPRF-209ENST00000438120 FAM156AQ8NDB6 213 aa17■□□□□ 0.31
PTPRF-209ENST00000438120 OR2T34Q8NGX1 318 aa17■□□□□ 0.31
PTPRF-209ENST00000438120 OR2T3Q8NH03 318 aa17■□□□□ 0.31
PTPRF-209ENST00000438120 FAR1Q8WVX9 515 aa17■□□□□ 0.31
PTPRF-209ENST00000438120 XPNPEP1Q9NQW7 623 aa17■□□□□ 0.31
PTPRF-209ENST00000438120 DNAJC28Q9NX36 388 aa17■□□□□ 0.31
PTPRF-209ENST00000438120 LGR5O75473 907 aa17■□□□□ 0.31
PTPRF-209ENST00000438120 PPP2R2BQ00005 443 aa17■□□□□ 0.31
PTPRF-209ENST00000438120 PITRM1Q5JRX3 1037 aa17■□□□□ 0.31
PTPRF-209ENST00000438120 HID1Q8IV36 788 aa17■□□□□ 0.31
PTPRF-209ENST00000438120 PCDH19Q8TAB3 1148 aa17■□□□□ 0.31
PTPRF-209ENST00000438120 TMEM27Q9HBJ8 222 aa17■□□□□ 0.31
PTPRF-209ENST00000438120 MRTO4Q9UKD2 239 aaKnown RBP17■□□□□ 0.31
PTPRF-209ENST00000438120 FAM86C2PA6NEL3 165 aa17■□□□□ 0.31
PTPRF-209ENST00000438120 PER2O15055 1255 aa17■□□□□ 0.31
PTPRF-209ENST00000438120 C9P02748 559 aa17■□□□□ 0.31
PTPRF-209ENST00000438120 ZBTB48P10074 688 aaPredicted RBP17■□□□□ 0.31
PTPRF-209ENST00000438120 CAPGP40121 348 aa17■□□□□ 0.31
PTPRF-209ENST00000438120 FAM110BQ8TC76 370 aa17■□□□□ 0.31
PTPRF-209ENST00000438120 SLC17A6Q9P2U8 582 aa17■□□□□ 0.31
PTPRF-209ENST00000438120 NR2E1Q9Y466 385 aa17■□□□□ 0.31
PTPRF-209ENST00000438120 DGKBQ9Y6T7 804 aa17■□□□□ 0.31
PTPRF-209ENST00000438120 hCG_2039718K7EN88 272 aa17■□□□□ 0.31
PTPRF-209ENST00000438120 IL12AP29459 219 aa17■□□□□ 0.31
PTPRF-209ENST00000438120 PLA2G16P53816 162 aa17■□□□□ 0.31
PTPRF-209ENST00000438120 SLC5A9Q2M3M2 681 aa17■□□□□ 0.31
PTPRF-209ENST00000438120 TIGD5Q53EQ6 642 aa17■□□□□ 0.31
PTPRF-209ENST00000438120 FAM131AQ6UXB0 335 aa17■□□□□ 0.31
PTPRF-209ENST00000438120 LRRC57Q8N9N7 239 aa17■□□□□ 0.31
PTPRF-209ENST00000438120 METTL21AQ8WXB1 218 aa17■□□□□ 0.31
PTPRF-209ENST00000438120 ADGRB2O60241 1585 aa17■□□□□ 0.31
PTPRF-209ENST00000438120 LCP2Q13094 533 aa16.99■□□□□ 0.31
PTPRF-209ENST00000438120 CRELD2Q6UXH1 353 aaPredicted RBP16.99■□□□□ 0.31
PTPRF-209ENST00000438120 UNC5BQ8IZJ1 945 aa16.99■□□□□ 0.31
PTPRF-209ENST00000438120 SLAIN1Q8ND83 568 aa16.99■□□□□ 0.31
PTPRF-209ENST00000438120 LENG8Q96PV6 779 aaPredicted RBP16.99■□□□□ 0.31
PTPRF-209ENST00000438120 CHID1Q9BWS9 393 aa16.99■□□□□ 0.31
PTPRF-209ENST00000438120 NKIRAS2Q9NYR9 191 aa16.99■□□□□ 0.31
PTPRF-209ENST00000438120 NOCTQ9UK39 431 aaKnown RBP16.99■□□□□ 0.31
PTPRF-209ENST00000438120 STX16-NPEPL1H3BU86 382 aa16.99■□□□□ 0.31
PTPRF-209ENST00000438120 STX16O14662 325 aa16.99■□□□□ 0.31
PTPRF-209ENST00000438120 NR4A1P22736 598 aa16.99■□□□□ 0.31
PTPRF-209ENST00000438120 MASP1P48740 699 aa16.99■□□□□ 0.31
PTPRF-209ENST00000438120 RGS8P57771 180 aaPredicted RBP16.99■□□□□ 0.31
PTPRF-209ENST00000438120 ATP13A5Q4VNC0 1218 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms