RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 BASP1P80723 227 aaKnown RBP14.92□□□□□ -0.02
LIMS3-201ENST00000437679 CACNG1Q06432 222 aa14.92□□□□□ -0.02
LIMS3-201ENST00000437679 CCDC173Q0VFZ6 552 aa14.92□□□□□ -0.02
LIMS3-201ENST00000437679 BCL7AQ4VC05 210 aa14.92□□□□□ -0.02
LIMS3-201ENST00000437679 CCDC38Q502W7 563 aa14.92□□□□□ -0.02
LIMS3-201ENST00000437679 ZNF574Q6ZN55 896 aaPredicted RBP14.92□□□□□ -0.02
LIMS3-201ENST00000437679 TAS2R42Q7RTR8 314 aa14.92□□□□□ -0.02
LIMS3-201ENST00000437679 JAMLQ86YT9 394 aa14.92□□□□□ -0.02
LIMS3-201ENST00000437679 RBM12BQ8IXT5 1001 aaKnown RBP14.92□□□□□ -0.02
LIMS3-201ENST00000437679 SLC35F6Q8N357 371 aa14.92□□□□□ -0.02
LIMS3-201ENST00000437679 BEND7Q8N7W2 519 aaPredicted RBP14.92□□□□□ -0.02
LIMS3-201ENST00000437679 PRELID2Q8N945 189 aa14.92□□□□□ -0.02
LIMS3-201ENST00000437679 CCDC74BQ96LY2 380 aa14.92□□□□□ -0.02
LIMS3-201ENST00000437679 UCK1Q9HA47 277 aa14.92□□□□□ -0.02
LIMS3-201ENST00000437679 CASS4Q9NQ75 786 aa14.92□□□□□ -0.02
LIMS3-201ENST00000437679 POT1Q9NUX5 634 aa14.92□□□□□ -0.02
LIMS3-201ENST00000437679 ZDHHC3Q9NYG2 299 aa14.92□□□□□ -0.02
LIMS3-201ENST00000437679 ZNF624Q9P2J8 865 aaPredicted RBP14.92□□□□□ -0.02
LIMS3-201ENST00000437679 LAMA5O15230 3695 aa14.91□□□□□ -0.02
LIMS3-201ENST00000437679 FAM208BQ5VWN6 2430 aa14.91□□□□□ -0.02
LIMS3-201ENST00000437679 CCDC78A2IDD5 438 aa14.91□□□□□ -0.02
LIMS3-201ENST00000437679 MGAT4DA6NG13 374 aa14.91□□□□□ -0.02
LIMS3-201ENST00000437679 LILRA5A6NI73 299 aa14.91□□□□□ -0.02
LIMS3-201ENST00000437679 OR52A4PA6NMU1 304 aa14.91□□□□□ -0.02
LIMS3-201ENST00000437679 CDRT15L2A8MXV6 281 aa14.91□□□□□ -0.02
LIMS3-201ENST00000437679 THRAP10827 490 aa14.91□□□□□ -0.02
LIMS3-201ENST00000437679 ATP1B2P14415 290 aaPredicted RBP14.91□□□□□ -0.02
LIMS3-201ENST00000437679 BRAFP15056 766 aa14.91□□□□□ -0.02
LIMS3-201ENST00000437679 ADRA1DP25100 572 aa14.91□□□□□ -0.02
LIMS3-201ENST00000437679 GRIA1P42261 906 aa14.91□□□□□ -0.02
LIMS3-201ENST00000437679 ABCG1P45844 678 aa14.91□□□□□ -0.02
LIMS3-201ENST00000437679 NFE2L1Q14494 772 aa14.91□□□□□ -0.02
LIMS3-201ENST00000437679 CLCA4Q14CN2 919 aa14.91□□□□□ -0.02
LIMS3-201ENST00000437679 C16orf72Q14CZ0 275 aa14.91□□□□□ -0.02
LIMS3-201ENST00000437679 COL28A1Q2UY09 1125 aa14.91□□□□□ -0.02
LIMS3-201ENST00000437679 WDR74Q6RFH5 385 aaPredicted RBP14.91□□□□□ -0.02
LIMS3-201ENST00000437679 TMEM26Q6ZUK4 368 aa14.91□□□□□ -0.02
LIMS3-201ENST00000437679 CLEC14AQ86T13 490 aa14.91□□□□□ -0.02
LIMS3-201ENST00000437679 SERPINA9Q86WD7 417 aa14.91□□□□□ -0.02
LIMS3-201ENST00000437679 RASGEF1CQ8N431 466 aa14.91□□□□□ -0.02
LIMS3-201ENST00000437679 OR2L2Q8NH16 312 aa14.91□□□□□ -0.02
LIMS3-201ENST00000437679 NCSTNQ92542 709 aa14.91□□□□□ -0.02
LIMS3-201ENST00000437679 CCDC97Q96F63 343 aaPredicted RBP14.91□□□□□ -0.02
LIMS3-201ENST00000437679 NAF1Q96HR8 494 aaKnown RBP14.91□□□□□ -0.02
LIMS3-201ENST00000437679 RANBP9Q96S59 729 aa14.91□□□□□ -0.02
LIMS3-201ENST00000437679 TBC1D10AQ9BXI6 508 aa14.91□□□□□ -0.02
LIMS3-201ENST00000437679 EIF2B3Q9NR50 452 aaKnown RBP14.91□□□□□ -0.02
LIMS3-201ENST00000437679 ACSL5Q9ULC5 683 aa14.91□□□□□ -0.02
LIMS3-201ENST00000437679 WDR37Q9Y2I8 494 aa14.91□□□□□ -0.02
LIMS3-201ENST00000437679 ADAMTS20P59510 1910 aa14.91□□□□□ -0.02
LIMS3-201ENST00000437679 AHCTF1Q8WYP5 2266 aa14.9□□□□□ -0.02
LIMS3-201ENST00000437679 TRBV5-4A0A0C4DH59 114 aa14.9□□□□□ -0.02
LIMS3-201ENST00000437679 AP3B1O00203 1094 aa14.9□□□□□ -0.02
LIMS3-201ENST00000437679 ITIH1P19827 911 aa14.9□□□□□ -0.02
LIMS3-201ENST00000437679 MPSTP25325 297 aa14.9□□□□□ -0.02
LIMS3-201ENST00000437679 PSMA3P25788 255 aa14.9□□□□□ -0.02
LIMS3-201ENST00000437679 ACRV1P26436 265 aa14.9□□□□□ -0.02
LIMS3-201ENST00000437679 CSTF2P33240 577 aaKnown RBP eCLIP14.9□□□□□ -0.02
LIMS3-201ENST00000437679 PRLHRP49683 370 aa14.9□□□□□ -0.02
LIMS3-201ENST00000437679 CDKN1CP49918 316 aaPredicted RBP14.9□□□□□ -0.02
LIMS3-201ENST00000437679 MAPK10P53779 464 aa14.9□□□□□ -0.02
LIMS3-201ENST00000437679 CFHR1Q03591 330 aa14.9□□□□□ -0.02
LIMS3-201ENST00000437679 METRNLQ641Q3 311 aa14.9□□□□□ -0.02
LIMS3-201ENST00000437679 FAM83HQ6ZRV2 1179 aaPredicted RBP14.9□□□□□ -0.02
LIMS3-201ENST00000437679 NLRP9Q7RTR0 991 aa14.9□□□□□ -0.02
LIMS3-201ENST00000437679 AGBL5Q8NDL9 886 aa14.9□□□□□ -0.02
LIMS3-201ENST00000437679 RCBTB1Q8NDN9 531 aa14.9□□□□□ -0.02
LIMS3-201ENST00000437679 PPHLN1Q8NEY8 458 aaKnown RBP14.9□□□□□ -0.02
LIMS3-201ENST00000437679 KCNE4Q8WWG9 221 aa14.9□□□□□ -0.02
LIMS3-201ENST00000437679 TBRG4Q969Z0 631 aaKnown RBP eCLIP14.9□□□□□ -0.02
LIMS3-201ENST00000437679 MAGOHBQ96A72 148 aaKnown RBP14.9□□□□□ -0.02
LIMS3-201ENST00000437679 MS4A14Q96JA4 679 aa14.9□□□□□ -0.02
LIMS3-201ENST00000437679 PDLIM2Q96JY6 352 aa14.9□□□□□ -0.02
LIMS3-201ENST00000437679 LINC00615Q96LM1 132 aaPredicted RBP14.9□□□□□ -0.02
LIMS3-201ENST00000437679 VPS37BQ9H9H4 285 aa14.9□□□□□ -0.02
LIMS3-201ENST00000437679 TMEM9Q9P0T7 183 aa14.9□□□□□ -0.02
LIMS3-201ENST00000437679 FAM8A1Q9UBU6 413 aa14.9□□□□□ -0.02
LIMS3-201ENST00000437679 RIMKLBQ9ULI2 386 aa14.9□□□□□ -0.02
LIMS3-201ENST00000437679 TTC7AQ9ULT0 858 aaPredicted RBP14.9□□□□□ -0.02
LIMS3-201ENST00000437679 PSMD13Q9UNM6 376 aa14.9□□□□□ -0.02
LIMS3-201ENST00000437679 LHX6Q9UPM6 363 aa14.9□□□□□ -0.02
LIMS3-201ENST00000437679 PCDHGA7Q9Y5G6 932 aa14.9□□□□□ -0.02
LIMS3-201ENST00000437679 CHD6Q8TD26 2715 aa14.9□□□□□ -0.02
LIMS3-201ENST00000437679 PIKFYVEQ9Y2I7 2098 aa14.89□□□□□ -0.03
LIMS3-201ENST00000437679 IGLV3-16A0A075B6K0 115 aa14.89□□□□□ -0.03
LIMS3-201ENST00000437679 CCDC162PA2VCL2 907 aa14.89□□□□□ -0.03
LIMS3-201ENST00000437679 PGRMC1O00264 195 aaKnown RBP14.89□□□□□ -0.03
LIMS3-201ENST00000437679 UBXN7O94888 489 aa14.89□□□□□ -0.03
LIMS3-201ENST00000437679 PRSS56P0CW18 603 aa14.89□□□□□ -0.03
LIMS3-201ENST00000437679 AMD1P17707 334 aa14.89□□□□□ -0.03
LIMS3-201ENST00000437679 ITPKBP27987 946 aa14.89□□□□□ -0.03
LIMS3-201ENST00000437679 SLC5A2P31639 672 aa14.89□□□□□ -0.03
LIMS3-201ENST00000437679 ARSDP51689 593 aa14.89□□□□□ -0.03
LIMS3-201ENST00000437679 SESN2P58004 480 aaPredicted RBP14.89□□□□□ -0.03
LIMS3-201ENST00000437679 RPE65Q16518 533 aa14.89□□□□□ -0.03
LIMS3-201ENST00000437679 SNAP47Q5SQN1 464 aa14.89□□□□□ -0.03
LIMS3-201ENST00000437679 TSTD2Q5T7W7 516 aa14.89□□□□□ -0.03
LIMS3-201ENST00000437679 AFTPHQ6ULP2 937 aa14.89□□□□□ -0.03
LIMS3-201ENST00000437679 PLXDC1Q8IUK5 500 aa14.89□□□□□ -0.03
LIMS3-201ENST00000437679 CFAP206Q8IYR0 622 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms