RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 LLGL2Q6P1M3 1020 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 DAW1Q8N136 415 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 CHFRQ96EP1 664 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 DCSTAMPQ9H295 470 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 HEBP1Q9NRV9 189 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 MARK1Q9P0L2 795 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 DEPDC5O75140 1603 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 MSH4O15457 936 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 SCN2BO60939 215 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 MYBP10242 640 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 CD79BP40259 229 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 ACTBP60709 375 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 ACTG1P63261 375 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 MFSD10Q14728 455 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 C10orf120Q5SQS8 335 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 CHRDL2Q6WN34 429 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 ZNF367Q7RTV3 350 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 SLC34A3Q8N130 599 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 TTLL6Q8N841 843 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 PHOX2BQ99453 314 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 CBWD1Q9BRT8 395 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 WDPCPO95876 746 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 CENPAP49450 140 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 TAS2R41P59536 307 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 GRB10Q13322 594 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 OXR1Q8N573 874 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 RNF157Q96PX1 679 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 PIDD1Q9HB75 910 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 A0A087X0B3 334 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 ANXA2P2A6NMY6 339 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 UBE2Q2LH0YL09 131 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 DNM1LO00429 736 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 XKRYO14609 159 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 MOCS2O96007 188 aaPredicted RBP7.12□□□□□ -1.27
VPS53-204ENST00000437048 ANXA2P07355 339 aaKnown RBP7.12□□□□□ -1.27
VPS53-204ENST00000437048 ETV1P50549 477 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 DSG2Q14126 1118 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 PARP15Q460N3 678 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 ERCC6L2Q5T890 1561 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 KCTD8Q6ZWB6 473 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 SLC26A9Q7LBE3 791 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 EPS8L1Q8TE68 723 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 C12orf43Q96C57 262 aaKnown RBP7.12□□□□□ -1.27
VPS53-204ENST00000437048 HSPA12BQ96MM6 686 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 NECAB3Q96P71 396 aaPredicted RBP7.12□□□□□ -1.27
VPS53-204ENST00000437048 SLC29A3Q9BZD2 475 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 TMEM27Q9HBJ8 222 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 POMPQ9Y244 141 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 TMEM127O75204 238 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 CPSF4O95639 269 aaKnown RBP7.12□□□□□ -1.27
VPS53-204ENST00000437048 TPRG1LQ5T0D9 272 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 NAPRTQ6XQN6 538 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 PDZD9Q8IXQ8 264 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 POU5F2Q8N7G0 328 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 RCN3Q96D15 328 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 MRIQ9BWK5 157 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 CYP27B1O15528 508 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 NRG3P56975 720 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 FKBP1AP62942 108 aaKnown RBP7.12□□□□□ -1.27
VPS53-204ENST00000437048 TLE3Q04726 772 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 MAMLD1Q13495 774 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 CBWD6Q4V339 395 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 HACD2Q6Y1H2 254 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 GID4Q8IVV7 300 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 NIPA2Q8N8Q9 360 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 HTRA1Q92743 480 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 ZSWIM3Q96MP5 696 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 ABCD2Q9UBJ2 740 aa7.12□□□□□ -1.27
VPS53-204ENST00000437048 SCAF4O95104 1147 aaKnown RBP7.11□□□□□ -1.27
VPS53-204ENST00000437048 IL7P13232 177 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 S100A7P31151 101 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 CCNFP41002 786 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 POU4F2Q12837 409 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 DAG1Q14118 895 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 TCEAL1Q15170 157 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 SLC5A5Q92911 643 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 CORO1BQ9BR76 489 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 MRPL42Q9Y6G3 142 aaKnown RBP7.11□□□□□ -1.27
VPS53-204ENST00000437048 THP07101 528 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 SNRPD1P62314 119 aaKnown RBP7.11□□□□□ -1.27
VPS53-204ENST00000437048 PCSK7Q16549 785 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 TCEAL6Q6IPX3 200 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 REPS2Q8NFH8 660 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 RPLP0P6Q8NHW5 317 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 PLA2G4CQ9UP65 541 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 EXOSC1Q9Y3B2 195 aaKnown RBP7.11□□□□□ -1.27
VPS53-204ENST00000437048 TECPR2O15040 1411 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 LINC00854A0A1B0GVQ3 168 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 BCAS2O75934 225 aaPredicted RBP7.11□□□□□ -1.27
VPS53-204ENST00000437048 UPP2O95045 317 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 CCNB2O95067 398 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 SERPIND1P05546 499 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 XRCC1P18887 633 aaPredicted RBP7.11□□□□□ -1.27
VPS53-204ENST00000437048 KELP23276 732 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 COL9A3Q14050 684 aaPredicted RBP7.11□□□□□ -1.27
VPS53-204ENST00000437048 SNAPC1Q16533 368 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 PFKFB4Q16877 469 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 PDSS2Q86YH6 399 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 OR4C6Q8NH72 309 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 GAD1Q99259 594 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms