RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 RPS3P23396 243 aaKnown RBP eCLIP12.22□□□□□ -0.45
USP40-205ENST00000430158 GABRB3P28472 473 aa12.22□□□□□ -0.45
USP40-205ENST00000430158 NSG1P42857 185 aa12.22□□□□□ -0.45
USP40-205ENST00000430158 C6orf132Q5T0Z8 1188 aa12.22□□□□□ -0.45
USP40-205ENST00000430158 FAM83HQ6ZRV2 1179 aaPredicted RBP12.22□□□□□ -0.45
USP40-205ENST00000430158 CYS1Q717R9 158 aa12.22□□□□□ -0.45
USP40-205ENST00000430158 DET1Q7L5Y6 550 aa12.22□□□□□ -0.45
USP40-205ENST00000430158 TAF8Q7Z7C8 310 aa12.22□□□□□ -0.45
USP40-205ENST00000430158 DENND6AQ8IWF6 608 aa12.22□□□□□ -0.45
USP40-205ENST00000430158 SLC35F3Q8IY50 421 aa12.22□□□□□ -0.45
USP40-205ENST00000430158 BEND7Q8N7W2 519 aaPredicted RBP12.22□□□□□ -0.45
USP40-205ENST00000430158 RHBDD1Q8TEB9 315 aa12.22□□□□□ -0.45
USP40-205ENST00000430158 SCG3Q8WXD2 468 aaKnown RBP12.22□□□□□ -0.45
USP40-205ENST00000430158 ZNF514Q96K75 400 aaPredicted RBP12.22□□□□□ -0.45
USP40-205ENST00000430158 TCF12Q99081 682 aa12.22□□□□□ -0.45
USP40-205ENST00000430158 RTKNQ9BST9 563 aa12.22□□□□□ -0.45
USP40-205ENST00000430158 GSDMCQ9BYG8 508 aa12.22□□□□□ -0.45
USP40-205ENST00000430158 ZCCHC2Q9C0B9 1178 aaKnown RBP12.22□□□□□ -0.45
USP40-205ENST00000430158 SAYSD1Q9NPB0 183 aa12.22□□□□□ -0.45
USP40-205ENST00000430158 TOR4AQ9NXH8 423 aa12.22□□□□□ -0.45
USP40-205ENST00000430158 TBC1D29Q9UFV1 150 aa12.22□□□□□ -0.45
USP40-205ENST00000430158 VPS9D1Q9Y2B5 631 aa12.22□□□□□ -0.45
USP40-205ENST00000430158 COL27A1Q8IZC6 1860 aaPredicted RBP12.21□□□□□ -0.45
USP40-205ENST00000430158 MGAT4DA6NG13 374 aa12.21□□□□□ -0.45
USP40-205ENST00000430158 GIPC1O14908 333 aa12.21□□□□□ -0.45
USP40-205ENST00000430158 KCNJ13O60928 360 aa12.21□□□□□ -0.45
USP40-205ENST00000430158 ANXA6P08133 673 aa12.21□□□□□ -0.45
USP40-205ENST00000430158 RHOXF2BP0C7M4 288 aa12.21□□□□□ -0.45
USP40-205ENST00000430158 ERVK-10P10266 1014 aa12.21□□□□□ -0.45
USP40-205ENST00000430158 MYF5P13349 255 aa12.21□□□□□ -0.45
USP40-205ENST00000430158 BRAFP15056 766 aa12.21□□□□□ -0.45
USP40-205ENST00000430158 PAMP19021 973 aa12.21□□□□□ -0.45
USP40-205ENST00000430158 AKT1P31749 480 aa12.21□□□□□ -0.45
USP40-205ENST00000430158 MAGEA4P43358 317 aa12.21□□□□□ -0.45
USP40-205ENST00000430158 TTPAP49638 278 aa12.21□□□□□ -0.45
USP40-205ENST00000430158 ADARP55265 1226 aaKnown RBP12.21□□□□□ -0.45
USP40-205ENST00000430158 ILF3Q12906 894 aaKnown RBP eCLIP12.21□□□□□ -0.45
USP40-205ENST00000430158 CTBP1Q13363 440 aa12.21□□□□□ -0.45
USP40-205ENST00000430158 SMAD1Q15797 465 aaKnown RBP12.21□□□□□ -0.45
USP40-205ENST00000430158 HSP90AA5PQ58FG0 334 aa12.21□□□□□ -0.45
USP40-205ENST00000430158 CTSL3PQ5NE16 218 aa12.21□□□□□ -0.45
USP40-205ENST00000430158 DNTTIP2Q5QJE6 756 aaKnown RBP12.21□□□□□ -0.45
USP40-205ENST00000430158 UBAP2Q5T6F2 1119 aaKnown RBP12.21□□□□□ -0.45
USP40-205ENST00000430158 TEDDM1Q5T9Z0 273 aa12.21□□□□□ -0.45
USP40-205ENST00000430158 WASH2PQ6VEQ5 465 aa12.21□□□□□ -0.45
USP40-205ENST00000430158 CHST15Q7LFX5 561 aaPredicted RBP12.21□□□□□ -0.45
USP40-205ENST00000430158 GKN2Q86XP6 184 aa12.21□□□□□ -0.45
USP40-205ENST00000430158 TRAPPC5Q8IUR0 188 aa12.21□□□□□ -0.45
USP40-205ENST00000430158 LMNTD2Q8IXW0 634 aa12.21□□□□□ -0.45
USP40-205ENST00000430158 ZBED8Q8IZ13 594 aa12.21□□□□□ -0.45
USP40-205ENST00000430158 NAGSQ8N159 534 aa12.21□□□□□ -0.45
USP40-205ENST00000430158 LILRA3Q8N6C8 439 aaPredicted RBP12.21□□□□□ -0.45
USP40-205ENST00000430158 DEFB124Q8NES8 71 aa12.21□□□□□ -0.45
USP40-205ENST00000430158 LKAAEAR1Q8TD35 194 aa12.21□□□□□ -0.45
USP40-205ENST00000430158 SETD7Q8WTS6 366 aaKnown RBP12.21□□□□□ -0.45
USP40-205ENST00000430158 CERS2Q96G23 380 aa12.21□□□□□ -0.45
USP40-205ENST00000430158 DCUN1D1Q96GG9 259 aa12.21□□□□□ -0.45
USP40-205ENST00000430158 APOLD1Q96LR9 279 aa12.21□□□□□ -0.45
USP40-205ENST00000430158 KCNK17Q96T54 332 aa12.21□□□□□ -0.45
USP40-205ENST00000430158 RHOXF2Q9BQY4 288 aa12.21□□□□□ -0.45
USP40-205ENST00000430158 MCMBPQ9BTE3 642 aa12.21□□□□□ -0.45
USP40-205ENST00000430158 DUSP23Q9BVJ7 150 aa12.21□□□□□ -0.45
USP40-205ENST00000430158 LRRC4CQ9HCJ2 640 aa12.21□□□□□ -0.45
USP40-205ENST00000430158 WASH6PQ9NQA3 447 aa12.21□□□□□ -0.45
USP40-205ENST00000430158 SMYD2Q9NRG4 433 aa12.21□□□□□ -0.45
USP40-205ENST00000430158 KLC4Q9NSK0 619 aa12.21□□□□□ -0.45
USP40-205ENST00000430158 C20orf96Q9NUD7 363 aaPredicted RBP12.21□□□□□ -0.45
USP40-205ENST00000430158 SCHIP1Q9P0W5 487 aaPredicted RBP12.21□□□□□ -0.45
USP40-205ENST00000430158 FBXO5Q9UKT4 447 aa12.21□□□□□ -0.45
USP40-205ENST00000430158 CDV3Q9UKY7 258 aaKnown RBP12.21□□□□□ -0.45
USP40-205ENST00000430158 KCNK6Q9Y257 313 aa12.21□□□□□ -0.45
USP40-205ENST00000430158 MED16Q9Y2X0 877 aa12.21□□□□□ -0.45
USP40-205ENST00000430158 ANKRD12Q6UB98 2062 aa12.2□□□□□ -0.46
USP40-205ENST00000430158 CEP295Q9C0D2 2601 aa12.2□□□□□ -0.46
USP40-205ENST00000430158 C17orf113A0A1B0GUU1 675 aa12.2□□□□□ -0.46
USP40-205ENST00000430158 CFAP99D6REC4 459 aa12.2□□□□□ -0.46
USP40-205ENST00000430158 PRMT5O14744 637 aaPredicted RBP12.2□□□□□ -0.46
USP40-205ENST00000430158 RALBP11234 206 aa12.2□□□□□ -0.46
USP40-205ENST00000430158 CKMT1AP12532 417 aa12.2□□□□□ -0.46
USP40-205ENST00000430158 SDHBP21912 280 aa12.2□□□□□ -0.46
USP40-205ENST00000430158 SSTR1P30872 391 aa12.2□□□□□ -0.46
USP40-205ENST00000430158 ACTR1BP42025 376 aa12.2□□□□□ -0.46
USP40-205ENST00000430158 SLC1A2P43004 574 aa12.2□□□□□ -0.46
USP40-205ENST00000430158 LEPRP48357 1165 aaKnown RBP12.2□□□□□ -0.46
USP40-205ENST00000430158 ACTR1AP61163 376 aa12.2□□□□□ -0.46
USP40-205ENST00000430158 TIAL1Q01085 375 aaKnown RBP eCLIP12.2□□□□□ -0.46
USP40-205ENST00000430158 CUL1Q13616 776 aa12.2□□□□□ -0.46
USP40-205ENST00000430158 GTF2H3Q13889 308 aa12.2□□□□□ -0.46
USP40-205ENST00000430158 DSG2Q14126 1118 aa12.2□□□□□ -0.46
USP40-205ENST00000430158 NFE2L1Q14494 772 aa12.2□□□□□ -0.46
USP40-205ENST00000430158 PLA2G4EQ3MJ16 856 aa12.2□□□□□ -0.46
USP40-205ENST00000430158 AARS2Q5JTZ9 985 aaKnown RBP12.2□□□□□ -0.46
USP40-205ENST00000430158 AGAP9Q5VTM2 703 aa12.2□□□□□ -0.46
USP40-205ENST00000430158 METRNLQ641Q3 311 aa12.2□□□□□ -0.46
USP40-205ENST00000430158 ZNF470Q6ECI4 717 aa12.2□□□□□ -0.46
USP40-205ENST00000430158 MRNIPQ6NTE8 343 aa12.2□□□□□ -0.46
USP40-205ENST00000430158 ZCCHC8Q6NZY4 707 aaKnown RBP12.2□□□□□ -0.46
USP40-205ENST00000430158 ZNF549Q6P9A3 640 aa12.2□□□□□ -0.46
USP40-205ENST00000430158 IYDQ6PHW0 289 aa12.2□□□□□ -0.46
USP40-205ENST00000430158 SLC30A9Q6PML9 568 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms