RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 CALRP27797 417 aaKnown RBP8.27□□□□□ -1.09
CD44-208ENST00000428726 PCSK6P29122 969 aa8.27□□□□□ -1.09
CD44-208ENST00000428726 HLA-FP30511 346 aa8.27□□□□□ -1.09
CD44-208ENST00000428726 VIPR2P41587 438 aa8.27□□□□□ -1.09
CD44-208ENST00000428726 RPS6KA3P51812 740 aa8.27□□□□□ -1.09
CD44-208ENST00000428726 PLOD1Q02809 727 aaPredicted RBP8.27□□□□□ -1.09
CD44-208ENST00000428726 RAD51Q06609 339 aa8.27□□□□□ -1.09
CD44-208ENST00000428726 ILF2Q12905 390 aaKnown RBP8.27□□□□□ -1.09
CD44-208ENST00000428726 ABRQ12979 859 aa8.27□□□□□ -1.09
CD44-208ENST00000428726 MTA1Q13330 715 aa8.27□□□□□ -1.09
CD44-208ENST00000428726 TMED1Q13445 227 aa8.27□□□□□ -1.09
CD44-208ENST00000428726 ACAP2Q15057 778 aa8.27□□□□□ -1.09
CD44-208ENST00000428726 TEAD2Q15562 447 aa8.27□□□□□ -1.09
CD44-208ENST00000428726 UAP1L1Q3KQV9 507 aa8.27□□□□□ -1.09
CD44-208ENST00000428726 DPY19L3Q6ZPD9 716 aa8.27□□□□□ -1.09
CD44-208ENST00000428726 VRK3Q8IV63 474 aa8.27□□□□□ -1.09
CD44-208ENST00000428726 CPSF7Q8N684 471 aaKnown RBP8.27□□□□□ -1.09
CD44-208ENST00000428726 GPR26Q8NDV2 337 aa8.27□□□□□ -1.09
CD44-208ENST00000428726 RP9Q8TA86 221 aaKnown RBP8.27□□□□□ -1.09
CD44-208ENST00000428726 CCDC126Q96EE4 140 aa8.27□□□□□ -1.09
CD44-208ENST00000428726 COQ10BQ9H8M1 238 aa8.27□□□□□ -1.09
CD44-208ENST00000428726 PREBQ9HCU5 417 aa8.27□□□□□ -1.09
CD44-208ENST00000428726 IL26Q9NPH9 171 aa8.27□□□□□ -1.09
CD44-208ENST00000428726 MRPL17Q9NRX2 175 aaKnown RBP8.27□□□□□ -1.09
CD44-208ENST00000428726 MTRRQ9UBK8 725 aa8.27□□□□□ -1.09
CD44-208ENST00000428726 FREM2Q5SZK8 3169 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 TRPC5OSA6NMA1 111 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 TMX2-CTNND1H3BSU7 103 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 AGRPO00253 132 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 ANGPT2O15123 496 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 KDELR3O43731 214 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 NRP2O60462 931 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 FGF18O76093 207 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 LRG1P02750 347 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 SNRPB2P08579 225 aaKnown RBP8.26□□□□□ -1.09
CD44-208ENST00000428726 GNAO1P09471 354 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 GSSP48637 474 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 EPHB3P54753 998 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 YBEYP58557 167 aaPredicted RBP8.26□□□□□ -1.09
CD44-208ENST00000428726 ERVPABLB-1P60509 514 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 HERVK_113P63132 956 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 RPL38P63173 70 aaKnown RBP8.26□□□□□ -1.09
CD44-208ENST00000428726 BCL2L1Q07817 233 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 SELPLGQ14242 412 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 PLCL1Q15111 1095 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 RFTN2Q52LD8 501 aaPredicted RBP8.26□□□□□ -1.09
CD44-208ENST00000428726 TCEAL5Q5H9L2 206 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 FAM109BQ6ICB4 259 aaPredicted RBP8.26□□□□□ -1.09
CD44-208ENST00000428726 HS3ST5Q8IZT8 346 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 EZH1Q92800 747 aaPredicted RBP8.26□□□□□ -1.09
CD44-208ENST00000428726 PPP2R3CQ969Q6 453 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 DCUN1D1Q96GG9 259 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 ITCHQ96J02 903 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 TRIB3Q96RU7 358 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 TCF25Q9BQ70 676 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 ERVK-6Q9BXR3 956 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 EBPLQ9BY08 206 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 ALG2Q9H553 416 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 ZFYVE1Q9HBF4 777 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 COMMD8Q9NX08 183 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 LZTS1Q9Y250 596 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 RNF11Q9Y3C5 154 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 POLR3HQ9Y535 204 aaPredicted RBP8.26□□□□□ -1.09
CD44-208ENST00000428726 CFAP20Q9Y6A4 193 aaKnown RBP8.26□□□□□ -1.09
CD44-208ENST00000428726 H3BSA7 217 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 SAP18O00422 153 aaKnown RBP8.26□□□□□ -1.09
CD44-208ENST00000428726 TBC1D4O60343 1298 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 CLDN11O75508 207 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 G6PDP11413 515 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 UQCRBP14927 111 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 HLA-DPA1P20036 260 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 ATP6V1B2P21281 511 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 PREPP48147 710 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 ZNF140P52738 457 aaPredicted RBP8.26□□□□□ -1.09
CD44-208ENST00000428726 IL2P60568 153 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 NFYCQ13952 458 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 ABRAXAS2Q15018 415 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 TGFBIQ15582 683 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 SLC14A2Q15849 920 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 NADK2Q4G0N4 442 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 ATP13A5Q4VNC0 1218 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 LRRC66Q68CR7 880 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 FAM45BPQ6NSW5 357 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 C16orf89Q6UX73 402 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 Q6ZVL8 140 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 GRASPQ7Z6J2 395 aaPredicted RBP8.26□□□□□ -1.09
CD44-208ENST00000428726 RAB44Q7Z6P3 723 aaPredicted RBP8.26□□□□□ -1.09
CD44-208ENST00000428726 DDX53Q86TM3 631 aaKnown RBP8.26□□□□□ -1.09
CD44-208ENST00000428726 PELI3Q8N2H9 469 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 TTC30BQ8N4P2 665 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 FAM45AQ8TCE6 357 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 CD200R1Q8TD46 325 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 TADA1Q96BN2 335 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 EGLN2Q96KS0 407 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 TSSK3Q96PN8 268 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 ATOH8Q96SQ7 321 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 CENPKQ9BS16 269 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 DCUN1D5Q9BTE7 237 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 ACAT2Q9BWD1 397 aa8.26□□□□□ -1.09
CD44-208ENST00000428726 MAP10Q9P2G4 905 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms