RNA–Protein interactions for RNA: ENST00000423636.6

PTPRN-204, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPRN, Length 3,313 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-204ENST00000423636 ANKRD34AQ69YU3 496 aa11.77□□□□□ -0.52
PTPRN-204ENST00000423636 FAM180BQ6P0A1 224 aa11.77□□□□□ -0.52
PTPRN-204ENST00000423636 SLC39A11Q8N1S5 342 aa11.77□□□□□ -0.52
PTPRN-204ENST00000423636 PIH1D2Q8WWB5 315 aa11.77□□□□□ -0.52
PTPRN-204ENST00000423636 CCDC28BQ9BUN5 200 aa11.77□□□□□ -0.52
PTPRN-204ENST00000423636 SPAG4Q9NPE6 437 aa11.77□□□□□ -0.52
PTPRN-204ENST00000423636 CMTM6Q9NX76 183 aa11.77□□□□□ -0.52
PTPRN-204ENST00000423636 SPG21Q9NZD8 308 aa11.77□□□□□ -0.52
PTPRN-204ENST00000423636 PCTPQ9UKL6 214 aa11.77□□□□□ -0.52
PTPRN-204ENST00000423636 PSMD13Q9UNM6 376 aa11.77□□□□□ -0.52
PTPRN-204ENST00000423636 TBC1D30Q9Y2I9 924 aa11.77□□□□□ -0.52
PTPRN-204ENST00000423636 COQ6Q9Y2Z9 468 aa11.77□□□□□ -0.52
PTPRN-204ENST00000423636 IRS1P35568 1242 aa11.77□□□□□ -0.53
PTPRN-204ENST00000423636 IST1P53990 364 aa11.77□□□□□ -0.53
PTPRN-204ENST00000423636 STX5Q13190 355 aa11.77□□□□□ -0.53
PTPRN-204ENST00000423636 TRIM25Q14258 630 aaKnown RBP11.77□□□□□ -0.53
PTPRN-204ENST00000423636 TEAD2Q15562 447 aa11.77□□□□□ -0.53
PTPRN-204ENST00000423636 OFCC1Q8IZS5 231 aa11.77□□□□□ -0.53
PTPRN-204ENST00000423636 CPSF7Q8N684 471 aaKnown RBP11.77□□□□□ -0.53
PTPRN-204ENST00000423636 SPDYE1Q8NFV5 336 aaPredicted RBP11.77□□□□□ -0.53
PTPRN-204ENST00000423636 SYTL2Q9HCH5 934 aa11.77□□□□□ -0.53
PTPRN-204ENST00000423636 UTS2RQ9UKP6 389 aa11.77□□□□□ -0.53
PTPRN-204ENST00000423636 NDUFAF1Q9Y375 327 aa11.77□□□□□ -0.53
PTPRN-204ENST00000423636 FNDC1Q4ZHG4 1894 aaPredicted RBP11.77□□□□□ -0.53
PTPRN-204ENST00000423636 C15orf38-AP3S2A0A0A6YYH1 394 aa11.76□□□□□ -0.53
PTPRN-204ENST00000423636 GRXCR1A8MXD5 290 aa11.76□□□□□ -0.53
PTPRN-204ENST00000423636 WASH3PC4AMC7 463 aa11.76□□□□□ -0.53
PTPRN-204ENST00000423636 WISP3O95389 354 aaPredicted RBP11.76□□□□□ -0.53
PTPRN-204ENST00000423636 PYGLP06737 847 aa11.76□□□□□ -0.53
PTPRN-204ENST00000423636 UQCRBP14927 111 aa11.76□□□□□ -0.53
PTPRN-204ENST00000423636 KPNA1P52294 538 aaPredicted RBP11.76□□□□□ -0.53
PTPRN-204ENST00000423636 MRPS35P82673 323 aaKnown RBP11.76□□□□□ -0.53
PTPRN-204ENST00000423636 LAPTM5Q13571 262 aa11.76□□□□□ -0.53
PTPRN-204ENST00000423636 AP5B1Q2VPB7 878 aa11.76□□□□□ -0.53
PTPRN-204ENST00000423636 ADNP2Q6IQ32 1131 aa11.76□□□□□ -0.53
PTPRN-204ENST00000423636 GPRIN3Q6ZVF9 776 aa11.76□□□□□ -0.53
PTPRN-204ENST00000423636 ARPINQ7Z6K5 226 aa11.76□□□□□ -0.53
PTPRN-204ENST00000423636 PHACTR4Q8IZ21 702 aa11.76□□□□□ -0.53
PTPRN-204ENST00000423636 SFRP1Q8N474 314 aa11.76□□□□□ -0.53
PTPRN-204ENST00000423636 CCDC126Q96EE4 140 aa11.76□□□□□ -0.53
PTPRN-204ENST00000423636 TCF25Q9BQ70 676 aa11.76□□□□□ -0.53
PTPRN-204ENST00000423636 WWOXQ9NZC7 414 aa11.76□□□□□ -0.53
PTPRN-204ENST00000423636 NOTCH4Q99466 2003 aa11.76□□□□□ -0.53
PTPRN-204ENST00000423636 WDFY3Q8IZQ1 3526 aa11.76□□□□□ -0.53
PTPRN-204ENST00000423636 ASPDHA6ND91 283 aa11.76□□□□□ -0.53
PTPRN-204ENST00000423636 TMEM202A6NGA9 273 aa11.76□□□□□ -0.53
PTPRN-204ENST00000423636 LEFTY2O00292 366 aa11.76□□□□□ -0.53
PTPRN-204ENST00000423636 TRIM38O00635 465 aa11.76□□□□□ -0.53
PTPRN-204ENST00000423636 E2F3O00716 465 aa11.76□□□□□ -0.53
PTPRN-204ENST00000423636 PRMT5O14744 637 aaPredicted RBP11.76□□□□□ -0.53
PTPRN-204ENST00000423636 LBPP18428 481 aa11.76□□□□□ -0.53
PTPRN-204ENST00000423636 LHCGRP22888 699 aa11.76□□□□□ -0.53
PTPRN-204ENST00000423636 WDR5P61964 334 aaKnown RBP11.76□□□□□ -0.53
PTPRN-204ENST00000423636 SLC5A9Q2M3M2 681 aa11.76□□□□□ -0.53
PTPRN-204ENST00000423636 Q6ZSR9 355 aa11.76□□□□□ -0.53
PTPRN-204ENST00000423636 SLC15A3Q8IY34 581 aa11.76□□□□□ -0.53
PTPRN-204ENST00000423636 CAAP1Q9H8G2 361 aa11.76□□□□□ -0.53
PTPRN-204ENST00000423636 LIN28AQ9H9Z2 209 aaKnown RBP11.76□□□□□ -0.53
PTPRN-204ENST00000423636 PRKAB1Q9Y478 270 aa11.76□□□□□ -0.53
PTPRN-204ENST00000423636 MAGEA13PA6NCF6 341 aa11.76□□□□□ -0.53
PTPRN-204ENST00000423636 GAPDHSO14556 408 aaPredicted RBP11.76□□□□□ -0.53
PTPRN-204ENST00000423636 HOXA2O43364 376 aa11.76□□□□□ -0.53
PTPRN-204ENST00000423636 GREM1O60565 184 aa11.76□□□□□ -0.53
PTPRN-204ENST00000423636 PGLSO95336 258 aa11.76□□□□□ -0.53
PTPRN-204ENST00000423636 PARNO95453 639 aaKnown RBP11.76□□□□□ -0.53
PTPRN-204ENST00000423636 CYBBP04839 570 aa11.76□□□□□ -0.53
PTPRN-204ENST00000423636 HLA-EP13747 358 aa11.76□□□□□ -0.53
PTPRN-204ENST00000423636 YAP1P46937 504 aaKnown RBP11.76□□□□□ -0.53
PTPRN-204ENST00000423636 TTPAP49638 278 aa11.76□□□□□ -0.53
PTPRN-204ENST00000423636 MNX1P50219 401 aaPredicted RBP11.76□□□□□ -0.53
PTPRN-204ENST00000423636 CLCN7P51798 805 aa11.76□□□□□ -0.53
PTPRN-204ENST00000423636 LAPTM4AQ15012 233 aa11.76□□□□□ -0.53
PTPRN-204ENST00000423636 TYSND1Q2T9J0 566 aa11.76□□□□□ -0.53
PTPRN-204ENST00000423636 HMBOX1Q6NT76 420 aa11.76□□□□□ -0.53
PTPRN-204ENST00000423636 GOLGA7Q7Z5G4 137 aa11.76□□□□□ -0.53
PTPRN-204ENST00000423636 DHFR2Q86XF0 187 aa11.76□□□□□ -0.53
PTPRN-204ENST00000423636 CLEC4FQ8N1N0 589 aa11.76□□□□□ -0.53
PTPRN-204ENST00000423636 PLD4Q96BZ4 506 aa11.76□□□□□ -0.53
PTPRN-204ENST00000423636 WRAP53Q9BUR4 548 aaKnown RBP11.76□□□□□ -0.53
PTPRN-204ENST00000423636 VCXQ9H320 206 aa11.76□□□□□ -0.53
PTPRN-204ENST00000423636 RIMS3Q9UJD0 308 aa11.76□□□□□ -0.53
PTPRN-204ENST00000423636 CORO1CQ9ULV4 474 aaPredicted RBP11.76□□□□□ -0.53
PTPRN-204ENST00000423636 RPL26L1Q9UNX3 145 aaKnown RBP11.76□□□□□ -0.53
PTPRN-204ENST00000423636 TTC34A8MYJ7 566 aa11.75□□□□□ -0.53
PTPRN-204ENST00000423636 SOCS2O14508 198 aa11.75□□□□□ -0.53
PTPRN-204ENST00000423636 FFAR2O15552 330 aa11.75□□□□□ -0.53
PTPRN-204ENST00000423636 ZNF821O75541 412 aaPredicted RBP11.75□□□□□ -0.53
PTPRN-204ENST00000423636 DNAJB1P25685 340 aa11.75□□□□□ -0.53
PTPRN-204ENST00000423636 ACVR1Q04771 509 aa11.75□□□□□ -0.53
PTPRN-204ENST00000423636 NFATC2Q13469 925 aa11.75□□□□□ -0.53
PTPRN-204ENST00000423636 ADGRE1Q14246 886 aa11.75□□□□□ -0.53
PTPRN-204ENST00000423636 CYP51A1Q16850 503 aa11.75□□□□□ -0.53
PTPRN-204ENST00000423636 PLEKHG6Q3KR16 790 aa11.75□□□□□ -0.53
PTPRN-204ENST00000423636 ANKRD26P1Q6NSI1 321 aa11.75□□□□□ -0.53
PTPRN-204ENST00000423636 Q6ZVL8 140 aa11.75□□□□□ -0.53
PTPRN-204ENST00000423636 PPP2R3CQ969Q6 453 aa11.75□□□□□ -0.53
PTPRN-204ENST00000423636 L3HYPDHQ96EM0 354 aa11.75□□□□□ -0.53
PTPRN-204ENST00000423636 ALG14Q96F25 216 aa11.75□□□□□ -0.53
PTPRN-204ENST00000423636 EBPLQ9BY08 206 aa11.75□□□□□ -0.53
PTPRN-204ENST00000423636 GLYATL1P3A0A0U1RQE8 302 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms